LOC103041957


Basic Information

Item Value
gene id LOC103041957
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 31519076 ~ 31541475 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247265.3
tttcttcctGCAAAATGAACGGCTGCTCCTACAGACATGGCCTCTGTCGTGACTGAGATAGCTGCCGCTCTTCTGATTTTTACATGTGTTGTTCAGGGAGCCCGGAGTCTTCAAATAGAACATGTGGAAACTCTGAGTGCAGTAGTGGGCCAGAATGTCAGCCTGCCCTGCATCGTGGCAGAGAAACATGAAGTGAACATCAACCAGATTGAATGGGATGTAAGGTTTAAAGATAATCGTGAAAGACTTGTGGTCTTTAATCCTCAGTATCGCCCTTATTATTTTGTGCCCGTCCACCTGGAGCTGGTGAACAGAACAAACTCAACAATTCTACGGGGCTCCATCCTGCATTTGTACAATGTTACAAAGAAGGACAGTGGAAGCTATTTTTGTGATATCACCACCTTCCCTTATGGATCCTACCGAAACAGTACAGTAGTGCAAGTCAcagATCCCTGGATCTCAGCAGAGGTCGTGTCCCCAGGTGAGTCTCTGATAGAGGGGGACGAGGTGAACATCACATGTGTCAGCAATCCTCCAGCTGACAGATACATGTTATCATCTCTACAGAATGGTTTGCTACTGGAAAGCAAGAGTGGACATTTCACAATACAGAGCGTCACTCGTCACAGCGGTGACCTGATTTGTCAGCCCTCAAACCAACAAAGCCTCCAAGCTAATCTCAGAATGACCGTGGACTATATTGACAGCATTAAGTGTAACTCCAGCACACAGTTAGAAGTGGAGACGGGCACCAATCTGACAATAACTTGTGAGACAACGTCTTCAAGACCCTTGAGTTACACCTGGAGGAAGGGGAATAAGACAGTGTCCCAAAACACCACTATCAGCTTGTGGTCAGTCACTCCTGAGCAGGCCGGGACGTACTCTGTGATCATCTACGCAAGAAACCATAGTCGTCTCCAGAGGCAGAGGGATTTTGTAGTGACAGTGCTCAACAGGACGGTTGCGGACCAACTAAGCAGCACTATTGAAACGGAAACAACGTGGCAGATCACGAATGCCACAACTCTCACAACAGCTGGACCTGGAACGATAACAACAGTGACACAACCAAGCCATACCACCAGCACCACAGAGAACAGCCTGTATTACAACACCACTGCGCCATCTGCTGGAGACATCAGCACATTACAAGCAAACATCACCTCAGCTCAGGCAAAAATCACCAGAGCTCCTGCAAACTTCACCAGAGCACATGCAAACTTCACCAGAGCTCCTGCAAACTTCACCAGAGCACATGCAAACTTCACCAGAGCACATGCAAACTTCACCAGAGCTCCTGCAAACTTCACCAGAGCACATGCAAACTTCACCAGACCACCTGCAAACTTCACCAGAGCACATTCAAACAATACTGTGAAGAGCAACGCCACCTGGAGCATCTCTCTGAACACTTCAGCTGAGGGGAGCACACTGTCTGAGGGCTGCTGTCAGTGGCACAATACTACATCCAGCCTGAGGTCTACCAGAGTTCACCAGTTCACCAGTGCTCAACCAATTACCAGTACAAACAGCTTCACAGCTACTTCCACTATGATCACAGAGAAAACTGTGGAAGTAAAGAAAAGTGGCagtatggtggtggtgttcGTTCTCATCCCCATCCTTCTGTTGTTGGTGCTGATTGGCTTTCTTTACAGGAGGTACCGCATCCAAAAAAGaatGGATATGCCTCCACCATTcaagcctcctcctcctccagtgAAGTACACATCAGTGAGAAGTCAGGACATACCTGTGACTGACATCTTAGTATGATGACATCGTCCATCAAAACAGAGCAACTGCATACGGAGAGGATTTTCTGAAAGTGAAAGTCCATtgtcagaaaaaaagtttatttttatacagcCCTTATTTGTGCTTTTCTATTTTAGTACCAGAGGTGTCCaattattaagtaattaagtacaaatacttatatatttaaaaatgttttgttgactTTTTAcctctacttcttacat

Function

GO:

id name namespace
GO:0030098 lymphocyte differentiation biological_process
GO:0042110 T cell activation biological_process
GO:0030163 protein catabolic process biological_process
GO:0030217 T cell differentiation biological_process
GO:0046649 lymphocyte activation biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0045321 leukocyte activation biological_process

KEGG:

id description
ko04650 Natural killer cell mediated cytotoxicity
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247265.3 True 1991 mRNA 0.46 9 31519076 31541475

Neighbor

gene id symbol gene type direction distance location
LOC111195087 NA coding downstream 9855 31499084 ~ 31509221 (-)
timm10b timm10b coding downstream 22358 31493584 ~ 31496718 (-)
ilk ilk,LOC107718724,LOC107720653 coding downstream 28715 31466629 ~ 31490361 (-)
nhlrc3 nhlrc3,LOC107671632 coding downstream 54284 31458438 ~ 31464792 (-)
LOC103043924 emsy,LOC107690840 coding downstream 62522 31424971 ~ 31456554 (-)
LOC103030874 mtnr1bb,LOC103030874,LOC108423763,LOC107720651,LOC107693905,LOC108276622,LOC105890457 coding upstream 220426 31761901 ~ 31847969 (-)
LOC103041448 kpna7,LOC103041448,LOC108423764,LOC108277302,LOC107693907,LOC107720648,LOC107556882 coding upstream 549214 32090689 ~ 32096800 (-)
LOC103041136 LOC108423765 coding upstream 558726 32100201 ~ 32106911 (-)
cct8 cct8,LOC107693911,LOC107701129 coding upstream 723522 32264997 ~ 32276777 (-)
LOC103038234 grik1,grik1a,LOC107701130,LOC107693913,LOC107718733,LOC107555187 coding upstream 801864 32343339 ~ 32428813 (-)
G180315 NA non-coding downstream 95886 31422385 ~ 31423190 (-)
G180309 NA non-coding downstream 122054 31339559 ~ 31397022 (-)
G180295 LOC108423808 non-coding downstream 212729 31297767 ~ 31306347 (-)
G180287 NA non-coding downstream 366139 31152546 ~ 31152937 (-)
G180285 NA non-coding downstream 398600 31119112 ~ 31120476 (-)
G180338 NA non-coding upstream 23122 31564597 ~ 31564868 (-)
G180342 NA non-coding upstream 40229 31581704 ~ 31581937 (-)
G180344 NA non-coding upstream 94872 31636347 ~ 31636548 (-)
G180373 NA non-coding upstream 201256 31742731 ~ 31742990 (-)
G180366 NA non-coding upstream 216623 31758098 ~ 31759438 (-)
G180188 dyrk1a,LOC108411986,LOC107572954 other downstream 561309 30946946 ~ 30957767 (-)
G179816 NA other downstream 2667971 28850690 ~ 28851105 (-)
G179578 LOC108423781,LOC107751398,LOC107693988,LOC107577128,LOC107691633,LOC107588586 other downstream 3952384 27561845 ~ 27566692 (-)
G179583 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 3993688 27524328 ~ 27525388 (-)
LOC103038646 zgc:194989,hist2h2l,LOC107719244,LOC107667924,LOC107574861,LOC108277172,LOC105900366,LOC103356012 other downstream 3994941 27523131 ~ 27524135 (-)
LOC103030555 LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 other upstream 352727 31894202 ~ 32071924 (-)
tmem135 tmem135,LOC107701128,LOC107718730 other upstream 698704 32240179 ~ 32262598 (-)
tiam1 tiam1,LOC108423828,LOC107718732 other upstream 894850 32436325 ~ 32584343 (-)
LOC103033173 NA other upstream 2263765 33805240 ~ 33855632 (-)
LOC103042595 LOC106931471,LOC106940241,LOC106603438,LOC107659943,LOC101067200 other upstream 3891757 35433232 ~ 35470789 (-)

Expression


Co-expression Network