ilk (ilk,LOC107718724,LOC107720653)


Basic Information

Item Value
gene id ilk
gene name ilk,LOC107718724,LOC107720653
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 31466629 ~ 31490361 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247268.3
GGAGCTCTTCCCTccacagagagaggaggaccTACAACCTCCGACTAGGGTGTGGACATTAGTGTCCGTCAGACTGCCCTTACCATCCCTGGAGCTTCGTCCCGGactaaattacagttttaccagACGGCCTGCACCGTAACTGAATGGTCCACTGCCCTTCACTTGTGGCATCTAGGTACCACTGCATCACACCCCTCTCCCAGGGCGCTCCTGGTAGGGGAAGAAGGATTCTACCAGTACGAAGAGTGAGGGGGAGCTGCAATGGATGATATCTTCACCCAGTGCAGAGAGGGCAATGCCGTAGCAGTCCGCCTCTGGCTGGACAACACTGAGAATGACCTAAACCAGGGAGATGATCACGGGTTCAGTCCGCTGCACTGGGCATGTCGAGAGGGCCGCTCCGGGGTGGTGGACATGCTCATCATGAGGGGTGCTCGCATCAACGTGATGAACCGTGGAGACGATACACCGCTCCACCTGGCGGCCAGCCACGGACACCGCGAAATCCTGGGCAAGCTGATTCAGTGCAAAGCAGACACCAACGCAGCTAATGAGCATGGCAACACCCCTCTCCACTATGCCTGCTTCTGGGGCCACGACCTGGTGGCCGAGGATCTGGTCAGTAACGGTGCTCAGGTGAGCATCTGCAACAAATACGGAGAAACCCCTATGGACAAAGCCAAACCACACCTGCGTGACCATCTGAAAGAAATGGCCGAAAAGCAGGGACAGAGTCTGACCAAAGTCCCCTTTAAGGACACCTTTTGGAAGGGCACAACGCGAACACGACCACGCAACGGCACACTTAACAAGCACGCTGGGATAGACTACAAGCAGCTCACATTAATGGCCAGGATCAATGAGAACCACTCTGGAGAGTTATGGAAGGGCCGTTGGCAAGGCACAGAGATTGTGGTGAAAGTTTTCCACATTCGGGACTGGACCACCAGAAAGAGCCGAGACTTTAATGAGGAATATCCTAAGCTAAGAATCTTCTCTCACCCTAACGTGCTGCCCATGTTGGGGGCATGTCAGGCACCCCCCGCTCCCCACCCCATCATCATCACACACTGGATGCCATATGGCTCCCTTTACAACGTGCTCCACGAGGGCACTAacTTTGTGGTGGATCAGATGCAAGCGGTTAAGTTTGCTCTTGATATTGCATGTGGGATGGCCTTCCTGCACACACTGGAGCCCATGATCCCACGGCATTATCTGAACAGCAAGAGTGTCATGATTGATGAGGACATGACGGCCAGGATAAGCATGGCAGATGTAAAGTTCTCGTTCCAGTGTCCTGGGAGGATGTATTCTCCAGCATGGATGGCCCCTGAAGCGCTGCAGAAGAAGCCTGAGGAGATAAACAGGCGCTCTGCGGACATGTGGAGCTTTGCTGTGTTGCTCTGGGAGCTGGTCACCAGAGAGGTGCCGTTCGCTGACCTCTCCAACATGGAGATTGGCATGAAGGTGGCACTAGAGGGTCTCCGTCCCACCATCCCACCTGGCATCTCTCCCCACATCTGCAAACTCATGAGGATCTGCATGAACGAGGATCCGGCCAAGAGGCCCAAATTCGACATGATCGTGCCCATCCTGGAGAAGATGCAAGATAAATGAGCGACCGTGTCTGAGAAACCACACCCCTCCCCCTGCTCATCCAACCCCCCCTGGCATCACCCTCCTCAAAATACTGAGCTCACCAGTATTGCCTTAAACTCGCCATGCACCAAAGTGCTCTGTGCCACTGTAATGTTTTAGCAAAGAAAATGCAACAGTTACACTTTCTGTGCAGCATTGGACCGTATAAACATTCTCCTCCTGACCTTTCTGTAATGTGCTTTGATATGCAATCAGTGgatgattgtgattgtgtgtgtatgtgaatgtgtgtgtatttgtctgTCTTCTCTCTGTAAAGGGGATTATGGAGCTAGCCCTAGTTATTTTAATGCCTCTCCATAGCCATTATTAATCCGTGCGTGCTGGTGATGATGAAAATGTGACACAGTGAATGTACTGTTGTAGCATCCAAAATTGGACAACACTTACCACTAGTTACTAGTCCCTCCATTTCAGCTcttctcatcatcatcatcatcacactcCTTCTACAGGGGTCTACAGGGCCATGTTTCATCAGTGTTGCCTGCGCATGCATAGATTTTAACCTATCCTTAAGCCACAAAGGGACTTTTTCAATGAATATAAAGGTATAGTCACTGATCAAAGCTATCACAACAGCCTTACTtcttactttcagcagctgtcCAGAATCTGAATGCTTGTGTATGTATAGGAAAAATCGCTTCTTGTGCCAGAATGAAGTATTTTTAACTTAAGTTTTAACTTAACTTTCACATATTCTATAAATGAAAGATTGGCAGAATGCAATAGCCTTATCACGCTGCGAGTTCCCACTGTAAAGTGCCCACTGTATCATTGTAGCATTCGTTACTGTACGCCTTCACTTATTTTAATGGTGGGATTTCCTGGCATTTCAAGTATTCGCCCCAGGCAGGGAGGAAATAACCTTTTTCCTGttgcagcaaaaaaaagaaaaaaacaaaataacaaaactcAGCACTCTGCATCTCCGCTAAACATGCATGATATGCCCTGCTGTTACACCACCATGCTCCTGCCACCTTATTCACACAGTCCATGTTACGTGCTAAATTAAATTTCTTCTATTTTGTACTGTACAcatatattgtatgtttttagCATGGAAGAAAAGACTGGAGAACCCATGCAATTATATATTTCTGCCAACACTACATCTATGAACTATCTGCTACTTTTTCTGCTTTTACTTTCGTCCACTACCAGCTTGTTGGTATTCTTGTAAGAgccagagagaagaaaagataaTAAACGTCCCCCCCCAGTTGTTTTGAATACATATATTAGAAGaataagtttttctttttttctctctagctCAAAATTGAACAGCTGTTGGAGAGACTGGAGAGTTAAAATAGACttgtatcttgtaacacaaGCTCACTTGTTCTCTTCCCCCCTCTCTGATATCTTAATTTTAACTTTGTGTGGCCTTTTGTTTATCTTATTTTGGAGATTTGggctgtttatattttattcatgttaacAGACGTTTACTAAAGGAAGAACAAATAAAGTGTTTTGGCCTTGCTTA

Function

symbol description
ilk Enables protein kinase activity. Acts upstream of or within several processes, including circulatory system development; muscle attachment; and tendon development. Located in Z disc and sarcolemma. Is expressed in brain; cardiovascular system; muscle; myoblast; and somite. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human ILK (integrin linked kinase).

NR:

description
PREDICTED: integrin-linked protein kinase-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0009966 regulation of signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K06272 ILK; integrin-linked kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247268.3 True 3166 mRNA 0.47 13 31466629 31490361

Neighbor

gene id symbol gene type direction distance location
nhlrc3 nhlrc3,LOC107671632 coding downstream 1837 31458438 ~ 31464792 (-)
LOC103043924 emsy,LOC107690840 coding downstream 10075 31424971 ~ 31456554 (-)
LOC103031187 LOC108423810 coding downstream 125182 31325828 ~ 31341447 (-)
psmg1 psmg1 coding downstream 178840 31280971 ~ 31287789 (-)
erg erg coding downstream 245372 31120776 ~ 31221257 (-)
timm10b timm10b coding upstream 3223 31493584 ~ 31496718 (-)
LOC111195087 NA coding upstream 8723 31499084 ~ 31509221 (-)
LOC103041957 NA coding upstream 28715 31519076 ~ 31541475 (-)
LOC103030874 mtnr1bb,LOC103030874,LOC108423763,LOC107720651,LOC107693905,LOC108276622,LOC105890457 coding upstream 271540 31761901 ~ 31847969 (-)
LOC103041448 kpna7,LOC103041448,LOC108423764,LOC108277302,LOC107693907,LOC107720648,LOC107556882 coding upstream 600328 32090689 ~ 32096800 (-)
G180315 NA non-coding downstream 43439 31422385 ~ 31423190 (-)
G180309 NA non-coding downstream 69607 31339559 ~ 31397022 (-)
G180295 LOC108423808 non-coding downstream 160282 31297767 ~ 31306347 (-)
G180287 NA non-coding downstream 313692 31152546 ~ 31152937 (-)
G180285 NA non-coding downstream 346153 31119112 ~ 31120476 (-)
G180338 NA non-coding upstream 74236 31564597 ~ 31564868 (-)
G180342 NA non-coding upstream 91343 31581704 ~ 31581937 (-)
G180344 NA non-coding upstream 145986 31636347 ~ 31636548 (-)
G180373 NA non-coding upstream 252370 31742731 ~ 31742990 (-)
G180366 NA non-coding upstream 267737 31758098 ~ 31759438 (-)
G180188 dyrk1a,LOC108411986,LOC107572954 other downstream 508862 30946946 ~ 30957767 (-)
G179816 NA other downstream 2615524 28850690 ~ 28851105 (-)
G179578 LOC108423781,LOC107751398,LOC107693988,LOC107577128,LOC107691633,LOC107588586 other downstream 3899937 27561845 ~ 27566692 (-)
G179583 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 3941241 27524328 ~ 27525388 (-)
LOC103038646 zgc:194989,hist2h2l,LOC107719244,LOC107667924,LOC107574861,LOC108277172,LOC105900366,LOC103356012 other downstream 3942494 27523131 ~ 27524135 (-)
LOC103030555 LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 other upstream 403841 31894202 ~ 32071924 (-)
tmem135 tmem135,LOC107701128,LOC107718730 other upstream 749818 32240179 ~ 32262598 (-)
tiam1 tiam1,LOC108423828,LOC107718732 other upstream 945964 32436325 ~ 32584343 (-)
LOC103033173 NA other upstream 2314879 33805240 ~ 33855632 (-)
LOC103042595 LOC106931471,LOC106940241,LOC106603438,LOC107659943,LOC101067200 other upstream 3942871 35433232 ~ 35470789 (-)

Expression


Co-expression Network