nhlrc3 (nhlrc3,LOC107671632)


Basic Information

Item Value
gene id nhlrc3
gene name nhlrc3,LOC107671632
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 31458438 ~ 31464792 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247270.3
CCAGTCATGTGACGGGAGAGCAGTCTCTCGGGTTCAGCTGTGGAGAAGAGAAGCTCTGCCCTGAAAACACATcctttatattttctgtatgaGAAGAAAGAGTAACTTGTGTTTAATTACTGTAACAATGGCTATACTTTTTCTAGTAACGTTCGTCATGTACACCACCTTCATGTCACACTCTGCAGCGTCTGGCAGTAGGAGGGACTTCCAGGTGGTGGGGAGACCCCTGTTTAAGCTGGATATCTCCTGGCCCCGGTTTCCGGAGTACTTCACCGGGGAGGTGTTCGGGGTGGCGGTCAGTCAGGTGGCTGGTGTGGTGTATGTGGCTCAGAGAGGTGAGAACATCCCTAAAGTGCTGGTGTTCAGCACGGATGGAGAATTCCTGCAAGCCTGGAACACCAGCACTCTGGAAATGCCGCACGGCATCTTCGTGGCCAACGCCTCCTCCCCGGAGCCCTCAGTGTGGGTCACTGATGTGGGAAACGGACCATATGGTCACACAGTAAAGCAGTACTCTCCCTCGGGGAAGCTCCTGCAGGTCCTGGGAACAGCAGGAAAGGCAGGCTCATCCCTCACACCTCTACAGTTTGATCAGCCTGCTGAAATTTTTGTCCACGATGCCACTGGAGAGATTTACATTGTGGATGGGGATGGTGGATTGAACAACCGCCTAATAAAACTGTCTAAAGATCTGCAGGTGCTGTGGATGCATGGGGAGAAAGGGCAGGGACTGGCACAGTTCTACATTCCCCACAGTGTGGCTGTAGATAACTCTCAGAGGGTATGGGTTGCAGACAGAGGAAATAAGCGCATCCAGGTGTTTAACTCGGTGACCGGTGACTGGTTGGGGTCATGGGGAAGCTGCTTCACAGAGGATTCACCCTACTCTGTCAGGTTCACCCCTGACCAGAAGTACCTGGTAGTTGCTCAGTTAAACACTAACCAGGTCTCTCTGCTGGAAGCTCCACCTGTGGGCATCATCGGCCAGTGCCAAGTTGTCAGTTCCATTCAGTTGGCTGATGATGTGAAGCCACACTTGGTAGACCTGGACCAAAAGAGTGGAGAGCTTTACGTGGCAGAAATCGGAGCCCAGCAGGCCCAGAGGTTCACACCCTTCACAATGGgcaacttttaaaaaatctagAAGCTCAGCTGATCAGAGTTCATCATTCTGTGCTAGAAATAAACGTATTTTCCTCAGCACTGTTGAGATTAGCCTTTCTAAGCAGCATAAATTTGGTTCTGGCGTACTTGAGTAATAGCATTTTGTTATGCCATTCCGGATCCCATTTCAATGTGAAAAGGCCAAAAGAATGCACTTTATATATTAAGAACTATAATCAGAGTACTATGTTCTCAGTGGTGTATCTGCAATATAAGCTATCCATGCTGGTGGGTGTTTCGGATGTTCTGAACTCTTCAACATCTATTGGGTGAGAAGCTTGaggctgtttttttgcacttaaaTTGTATAGTCagaaatgtatattaatatatactcTTGACTGTTCTTGAGTGATTGAAATTGAAAGTGATTTTGAATGTTCTTGTGATTGTATTTgctactaaatatatataattgaacaattatatttagctttttgtatttctgttttaGTTTTGTGTTGTAAGAAGTgaatgttcatggtccatttactgtttttatatatttaaagtggAAATGTGTTGATGCCTTTCCTGTGTTTTGTCTTGCTGCATACAGCTTTAATGTACCAATTTTGGCCTGCGTGAAAGCTGAGTAAGCCTCATTTATATCCTCTTTATGCTTCCTATATATCCACTAGAGCAGAGTTTTCTAATCCTGGTCCTCTGGGTCCATTTTCTTGCACATTTTAGAGCTGCTTAATCTCACCCAGTTTAAGTCGCTAATGGTCGATttattagttcattagttggatcaggatTGTTAGAAGCAGGGAAATTACTAAAATCTGCAGGGCGGTGGACCTCCAGAACCAGGACTGAGAAACGGACTGCACTAGAGGAGATTTTTATACAGTGTGGCAGTGGTCGTGTTTTGCTATCAATTTTAGTTGTACTCTTTATTCTTTCAGTGTCCGCAAGCTTTCAGAGAACGTACACAAATACGGATGAAATGAATATATAGTGTACAGACTGAAGGCTTCTTCCGTGTCTGTTCCTAATGTTGAGCATAAATGAGCCTTTACATTTGTATGAACATCATAAAAATTAACAGCTGTAAATTGTGGACTGCAGTCATTGCATACAATATGTTGTGTTTGCTGTATCCATCACTTGTTTTAAGGTTATTGGTATTTGGTCAGTTTCATATTAgaaatgtttttgtattgtCCCACAGTCGTATTACAACCTTTTACAAATTACTTTGATGGTGGAATAAGATCCCTCCTTTCTGTATATTTTGAAAGAACTGTGTTTTTATCTTCTCTgggttgttttattattgtattcagCTGTTTTGCTGATATTGTATTGTAGAACAATTGCAATCTAATTGTAATGATTTAAATGGTTGATTCTCTATGCTTAAAATTCCATCAATCAGTCAGCCTGGGTTGAAATTCATAATGAGttgtaacataaaaataaataaaatattgtttctaGTGTTC

Function

symbol description
nhlrc3 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein polyubiquitination. Predicted to be located in azurophil granule lumen and extracellular region.

NR:

description
PREDICTED: NHL repeat-containing protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247270.3 True 2618 mRNA 0.42 7 31458438 31464792

Neighbor

gene id symbol gene type direction distance location
LOC103043924 emsy,LOC107690840 coding downstream 1884 31424971 ~ 31456554 (-)
LOC103031187 LOC108423810 coding downstream 116991 31325828 ~ 31341447 (-)
psmg1 psmg1 coding downstream 170649 31280971 ~ 31287789 (-)
erg erg coding downstream 237181 31120776 ~ 31221257 (-)
kcnj6 kcnj6,LOC107690833,LOC107747353 coding downstream 401151 30972480 ~ 31057287 (-)
ilk ilk,LOC107718724,LOC107720653 coding upstream 1837 31466629 ~ 31490361 (-)
timm10b timm10b coding upstream 28792 31493584 ~ 31496718 (-)
LOC111195087 NA coding upstream 34292 31499084 ~ 31509221 (-)
LOC103041957 NA coding upstream 54284 31519076 ~ 31541475 (-)
LOC103030874 mtnr1bb,LOC103030874,LOC108423763,LOC107720651,LOC107693905,LOC108276622,LOC105890457 coding upstream 297109 31761901 ~ 31847969 (-)
G180315 NA non-coding downstream 35248 31422385 ~ 31423190 (-)
G180309 NA non-coding downstream 61416 31339559 ~ 31397022 (-)
G180295 LOC108423808 non-coding downstream 152091 31297767 ~ 31306347 (-)
G180287 NA non-coding downstream 305501 31152546 ~ 31152937 (-)
G180285 NA non-coding downstream 337962 31119112 ~ 31120476 (-)
G180338 NA non-coding upstream 99805 31564597 ~ 31564868 (-)
G180342 NA non-coding upstream 116912 31581704 ~ 31581937 (-)
G180344 NA non-coding upstream 171555 31636347 ~ 31636548 (-)
G180373 NA non-coding upstream 277939 31742731 ~ 31742990 (-)
G180366 NA non-coding upstream 293306 31758098 ~ 31759438 (-)
G180188 dyrk1a,LOC108411986,LOC107572954 other downstream 500671 30946946 ~ 30957767 (-)
G179816 NA other downstream 2607333 28850690 ~ 28851105 (-)
G179578 LOC108423781,LOC107751398,LOC107693988,LOC107577128,LOC107691633,LOC107588586 other downstream 3891746 27561845 ~ 27566692 (-)
G179583 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 3933050 27524328 ~ 27525388 (-)
LOC103038646 zgc:194989,hist2h2l,LOC107719244,LOC107667924,LOC107574861,LOC108277172,LOC105900366,LOC103356012 other downstream 3934303 27523131 ~ 27524135 (-)
LOC103030555 LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 other upstream 429410 31894202 ~ 32071924 (-)
tmem135 tmem135,LOC107701128,LOC107718730 other upstream 775387 32240179 ~ 32262598 (-)
tiam1 tiam1,LOC108423828,LOC107718732 other upstream 971533 32436325 ~ 32584343 (-)
LOC103033173 NA other upstream 2340448 33805240 ~ 33855632 (-)
LOC103042595 LOC106931471,LOC106940241,LOC106603438,LOC107659943,LOC101067200 other upstream 3968440 35433232 ~ 35470789 (-)

Expression


Co-expression Network