LOC103043924 (emsy,LOC107690840)


Basic Information

Item Value
gene id LOC103043924
gene name emsy,LOC107690840
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 31424971 ~ 31456554 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247271.3
GCGCGGGCAGCCCggctgctgttttggagagaGGATAGTCATGGCGGATTGGAGGGACCCGAAGGGAATGGAGCTAGAGGAGCTAAAGGAGAGGTCAGTGTTCTCTTAAAGATAACTACAAGATAAAGTATTTCCCATCGTTTCCAGAAGAGGTCACTTTCTCAGAGTGGATGATTCAGCAGGAGAAGCCACAGCTGGCTGGCACCATGCCGGTGGTGTGGCCTACGCTCCTGGACCTCAGCAGGGACGAGTGTAAAAGGATCCTGCGAAAGCTCGAGCTGGAGGCGTACGCAGGTGTGATCAGCGCTCTCCGCGCTCAGGGGGATCTAACCAAGGACAAGAAAGATCTGCTGGGGGAGCTCACCAAAGTCCTAAGCATCTCCACCGAGCGACATCGAGCAGAGGTGCGCAGGGCAGTGAACGATGAGCGTCTCACAACCATCGCATATCAcATGTCTGGACCAAACAGCTCTTCAGAGTGGTCTATTGAGGGGCGCAGGCTGGTCCCTCTGATGCCCAGGCTGGTGCCACAGACGGCTTTCACTGTGACAGCCAACGCAGTGGCCCATGCAACGGCGCATCAGAATTCTTCACTGCTTCTCCCTGCAGAGACCGGCAACAAGGAAGtggtgGTGTGTTACTCGTACACCAGCACTACTGCCACGCCCCCCAGCGCCTCCGCccccagcagcagcacagcagctgTAATCAAATCCCCCCGGCCTGCTAGTCCTGCCTCCAACGTGGTGGTCCTACCCAGTGGGAGTACTGTTTATGTGAAAAgtGTGAGCTGCTCTGACGAAGATGAGAAGCCTCGTAAGCGCAGGCGCACCAACTCCTCAGGCTCCTCCCCTGTGCTTTTGAAGGAGGTGCCTAAAGTGGCCCCGCCcatctccaagaccatcacagTGCCGGTCAGCGGCAGCCCTAAGATGAGCAACCTGATGCAGAGCATCGCAAACTCTCTGCCCCCTCACATGTCTCCAGTGAAGATCACCTTCACCAAGCCCACCACGCagaccaccaacaccaccacacaGAAGgtAATTATTGTCACAACGTCTCCGAGCTCCAACTTTGTGCCCAACATCCTCTCCAAGTCGCACAACTATGCCGCCATGTCCAAGCTGGTCTCCAGCTCTATGCTGACTGCAACCAATCAGAAGCAGACTATGGTGATCTCAGCGGGCACCAGTGTTGCCCCAGCACCCGCCCCTGTTGCTGTGACAACTGTAGTGTCGTCCACACCTACGGTGGTGATGTCCACTACGTCTCAGAGTGGGACCTCTGCAGCTGTAAAGGTAGCCACAGCGAGACTGCCCTCTCCTAAAGCTCTGGTGAGCTCACCCTCTCACATCCTCCAGTTCCCtaaacaacagcagcaacaacagcagtCCCATCAGTCCCAGTCACCCAAAGGTCTGCAGGGCACACCCCTCTCCGCCTCGCCTCAAAGCTCCAGCACATCAGCAGGATCCAAACCCACCATACAGATCAAACAGGAATCAGgTGTGAAGATTATCACACAGCAGATGCAGCCCAGTAAGATCTTGCCCAAGCCCTCCAGTGCAGCCATGCCCAGTAGCAGCTCTGCTCCAATCATGGTGGTCAGCAGCAATGGGGCAATCATGACCACAAAACTGGTCTCTACCCCTACAGGGACTCAGGCCACCTACACCCGGCCATCAGTAAGCCCCACTATCGGAGCCCGAATGGCCACCTCACCAGCCGGGGCCACCTACGTAAAGACCACCAGCGGCAGCATCATTACAGTGGTGCCCAAGTCTTTGGCTACGCTTGGGGGGAAAATCATCAGCACCAATATCGTTTCAGGCACCACCACAAAGATCACCACCATTCCCATGACCTCCAAACCCAACGTCATCGTGGTGCAGAAGACCACTGGGAAAGGCACAACCATTCAGGGCTTGCCTGGGAAGAATGTGGTCACCACGCTCTTAAATGCTGGGGGTGAGAAGGCTCTGCAGGCTTTGCCAGGAGCAAAGCCCGCGATCATCACAGCGTCTCGGCCAATCACAAAGATGATCGTGACGCAGCCCAAGAGTCTAGGCTCAGCAGTGCAGCCCTCCAGCACCACCAAGATCATCCCCACCAAGATCGTCTATGGACAGCAGGGCAAGACCCAGGTGCTGATAAAGCCGAAGCCCATGGCGTTCCAGACGGCCATGGTGAGTGAGCAGACGAGGCAGCTGGTCACGGAGACGCTGCAGCAGGTGTCCAGAGGAGCAGAGGCAGGCGCAGTACCCGGATCCAGTCAGGAGTGGACGCCGAAAGATGACTCTCCGTCTTACATGGACAGCAGCCCTGCATCCTCAGACAGTACGCACGAAGCCCAGCCGGTGGTGCACGTCATCACCTCCAGGGCCCAGGACTGGGCCGAGCAGGAGGTCTCTGTGGAAGCGAGTCCCACCATCATCTACCAGGATGTGAGTGGAGAAGCTCAGTCAGCCACGTCCACCATCAAAGCCCTGCTGGAGCTGCAGCAGACCACAGCAAAGGAGAAGGCTGAAGCCAAGCCCAGACAGCACACCATTGATCTGAGTCAGATGGCAGTGCCCATCCAGATGGCCCCGGAGAGGAGGCAGTCTCCCGAGCCGTCGGGCCAGGCTGCAGGCGAGCCTGAAACTCCAGCAGAGTGCAGCACTATAGGTAAAGCAGTGAAGTCTGCAGCAGCAGGCAGTGAAGTGACCGTATCCAGCAGCCAGTCACCAGCTCTCTCCTCCACAGTAAAAATCTCCAGTTCTGCACCTTCAGCCAGCACCACCACACTCAGCGCTCAGGCTGTCGCTTCTCCTGCGCAGGGCAGGCCTCTGGAGGAGCAGACTGTAGTGGAGGAGGGCGAGTTGGATGGTGACACACTGGATCCACAGACTGGACTTTTCTACAGATCAGCTCAGCCCCCACCTCCCCCCCTCCAGCAGCACCGCACGCCACCTCACACCCTCACCAAACCCACTGCTACCCCACCCATGCCCACCAAAGCTGCCCCAGGACCAGCTGAAGCGGTTCCGGCCCCCAAGAGACCAGAACAGACCACCCCCAGACCCTGTCCTCCTCCAGCAGCCTCCGTTAAACCCTCCATCTCCCAATCACCCTCTTCCTCTGCCTcctctgcatcagcagcagcccAGCCTGCCCTGCACACACTCCCCACCAaacccccacacactccacagctgcCCAAACTACAGCAAGCTCCCAGCTCACACAACCGccctaacatacacacacaactgtCCCAGCCCCCACCGCTGCAGGCCCACCACCCAGTGGGTTCGGACAAAGcggccagcagcagcagcaccaccagTAGCAGCAGCGCTCAGaCATCACGACCTCTGGTTCCTGTCAGCACCACTGTGAAGAAATCAGATTCAGTGCAGCAGCCAATCATTACACAGGGCGCTGCAGTCACAAAGATCACCTTCGGAGGTCACCAGTGTCCACCTGTGTCCAGCAGCGGTGAGGCAGCAGCTAAGCTGCAGGCCGAGTCCAGCTCAGGACTGGGCACGTCTGAGAAAGCTGGGGTTTCAGACATTCTGAAGATTTCCATGATGGAGGCAGAGATTGACCCCAGCACAGAGTCTGTGGTAGTGGACTCATCCAGCGACTGCAGCCCCTTCACCAAAGCCGCATCCACCTCCCCCCTCATCAGCAGCTCCAAACACACGCACTCGCACACCCACAGTGCCTTCGGTCGCATTCAGAAGAGCAAAGACCTGGATGTGATACAGGTCATCCCCCAGTACTCCATAATGCCAGACTCCAGTCAGTCGAATGTGGTGGTGGAACCCAGCGGCTTCCTGGAGATCACAGACTACACCAGCCAGCGTCTGGACGAGGAGGCCGCCATGGACCAGGAGGTGGACAGCAGCAACGACGAGGGGACGGCTGCCAGCCCCATGGAGGCCTGCGCCGACCAATCACAGTGAGCGGGGGAGGGTGTGTTTAACACAGCCCTGAGAATCCGCTCAGGAGGAACAGGATGGTAGAAGCCTTTGGAGTTCATGCTTAATAGTGTTCATAAGGAGAACTGAAGTAATCAGTCTTGAGGAACCAATAGGAAATCATGGAATGTTGGGGACAAGCTTCCGAAAATGGAAGAATGTGACGAAAGGAAAAACTTCAGTATCTCCCATCAGGCTTGAACAGCAAGTGACTGTTCTTTACTTTCTCTCCTCCACACATTTCgcttgattgtttttttttttcatagcagtaaaaaatgatggaaatgtattggttttgTTTACGTAACGTCCTGCAGGACCTCGAGGGCAGGAGTGTGCTTATTAGGATTTTGAGGATAAATGACATCTGTAGAGAAAGAGCAAAGAACTCTTGATTCAGATGTTTTTGATGATTACGATTGAATGGTAAAAAGGGGAATCcaccatttatttttattttttacttttgttctcTTCAGTCATTCTGCCGAGTGGTTTGACGTGAAAAGCACTCATCTATCTAGAGAAATCAACCCAATCATAATTGTTCTCAGTGGTGGTGACTGGGATCAGGCGTCTGAAGATCCTCTGGAAGCTCCTTTGCAGAAACTGTTACATAAAAAATGGTTACAGATATTTTGAGTGATATAAgagttatattttttatctttttttttgagtttttgtggTAAGCATATATGGCGGACTGTTAGCTGGCCAACTGTAGTAGCTGCAGTTGTGATGGGGGGCAGGTCCTTGGTTGGACTGTCTAGACTGTGAAGACTCCTGCTTTTGTCTGTAAGGCAATTGGTCACGGATATGGATCAGTCTAACACCATAAGATGATGTTATTATAAGAGAAAAACTTAGAAAACCTTTTTATTTCTCCATGGAAAAAGAATtgtaattataaaacataaCGTAAATGCTGA

Function

symbol description
emsy Predicted to act upstream of or within DNA repair; chromatin organization; and regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be active in nucleoplasm. Orthologous to human EMSY (EMSY transcriptional repressor, BRCA2 interacting).

NR:

description
PREDICTED: BRCA2-interacting transcriptional repressor EMSY isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247271.3 True 4903 mRNA 0.54 23 31424971 31456554

Neighbor

gene id symbol gene type direction distance location
LOC103031187 LOC108423810 coding downstream 83524 31325828 ~ 31341447 (-)
psmg1 psmg1 coding downstream 137182 31280971 ~ 31287789 (-)
erg erg coding downstream 203714 31120776 ~ 31221257 (-)
kcnj6 kcnj6,LOC107690833,LOC107747353 coding downstream 367684 30972480 ~ 31057287 (-)
dscr3 dscr3 coding downstream 492157 30926168 ~ 30932814 (-)
nhlrc3 nhlrc3,LOC107671632 coding upstream 1884 31458438 ~ 31464792 (-)
ilk ilk,LOC107718724,LOC107720653 coding upstream 10075 31466629 ~ 31490361 (-)
timm10b timm10b coding upstream 37030 31493584 ~ 31496718 (-)
LOC111195087 NA coding upstream 42530 31499084 ~ 31509221 (-)
LOC103041957 NA coding upstream 62522 31519076 ~ 31541475 (-)
G180315 NA non-coding downstream 1781 31422385 ~ 31423190 (-)
G180309 NA non-coding downstream 27949 31339559 ~ 31397022 (-)
G180295 LOC108423808 non-coding downstream 118624 31297767 ~ 31306347 (-)
G180287 NA non-coding downstream 272034 31152546 ~ 31152937 (-)
G180285 NA non-coding downstream 304495 31119112 ~ 31120476 (-)
G180338 NA non-coding upstream 108043 31564597 ~ 31564868 (-)
G180342 NA non-coding upstream 125150 31581704 ~ 31581937 (-)
G180344 NA non-coding upstream 179793 31636347 ~ 31636548 (-)
G180373 NA non-coding upstream 286177 31742731 ~ 31742990 (-)
G180366 NA non-coding upstream 301544 31758098 ~ 31759438 (-)
G180188 dyrk1a,LOC108411986,LOC107572954 other downstream 467204 30946946 ~ 30957767 (-)
G179816 NA other downstream 2573866 28850690 ~ 28851105 (-)
G179578 LOC108423781,LOC107751398,LOC107693988,LOC107577128,LOC107691633,LOC107588586 other downstream 3858279 27561845 ~ 27566692 (-)
G179583 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 3899583 27524328 ~ 27525388 (-)
LOC103038646 zgc:194989,hist2h2l,LOC107719244,LOC107667924,LOC107574861,LOC108277172,LOC105900366,LOC103356012 other downstream 3900836 27523131 ~ 27524135 (-)
LOC103030555 LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 other upstream 437648 31894202 ~ 32071924 (-)
tmem135 tmem135,LOC107701128,LOC107718730 other upstream 783625 32240179 ~ 32262598 (-)
tiam1 tiam1,LOC108423828,LOC107718732 other upstream 979771 32436325 ~ 32584343 (-)
LOC103033173 NA other upstream 2348686 33805240 ~ 33855632 (-)
LOC103042595 LOC106931471,LOC106940241,LOC106603438,LOC107659943,LOC101067200 other upstream 3976678 35433232 ~ 35470789 (-)

Expression


Co-expression Network