LOC103031084


Basic Information

Item Value
gene id LOC103031084
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 3170196 ~ 3173556 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250237.3
ATCCACAAGGACAAGGCTGTTTGCTCCTCACCCAACACCACCCACCGCATCCACCCCCCTACTTCCCTCACCCCAATCACATCGATCCGCCTGCCCCATAGGGCCAGAAAATCCTGAAACCTGTTCACAAGTCCGTCACAGGTGCCTGGAGCCCACTGCCTCTTTATTGCTCCATCAGACCTACTACTTGTTCCATCGTTCCTCATGGAGGTGGCCAAACTCGGACCCTACTCTTACGCTCGGACCATAATCCTCTGTATCTCGCTGCTGCTTCGTTGGGGTCAGACCAGCCCGATTCCATCGCTTGAAGAGCCCAGATCGGTTTCAGGAGCGTCCAGGCAGGTGGATCTATCTCTGCTGGGTCAGGATGATAACGTGGATGCTCAGGTGTTGCTGGGCCAGTTCCTCTACATGTTAAATCTGACAGAGCAAGGGGCAGCGCCGAGGCCCCGGGCTGCTCGGGTCGAGCCGCCAGAGTACATGCTGGAACTGTACAACCAGTACGCCAAAGACCGCAGCACCATGCCTGAGGCCAATATTGCACGCAGTTTCAAGAACGAAGACTCCTCCCCCCATGGAGTGACGAGCAGAGGTGTGAGGACATACCCACTTATGTTCAACGTCTCCGTCCCACATCAGGAACGCATCATCGCAGCTGAGCTCCGCCTCTACATGCTGGTCAATCGAGATCCAGGGCGCTACGAAGGTGTCGACTGGAAGGTCACCGTTTTTGAGATGCAGGGTGAAGGTGCCTCTCCAATTGGGGGCGTCGGTGGGGAAGGTGGGAAAAGTGAGAACGGACTGATTGGAatgcaggagctggcggtgagGAACGGCCATCGCAAACACAGCGGCTGGGAGGTGTTCGTTCTGACAGACGCTGCCCAGCGCTGGAGGAAATCTGAAGGCACAAGCCACTGGCTGGAGCTCCATGTTGAAAGCCTGAACAATGACGCAAATGAAGGCCATTTATGGGATAAAGATGATGGAGATGGAGTTGGTTTGATTGGTCTGGACATTGATACCAGCCCAGAAGGAAAGCATGAACCAGTGCTCATAGTCTTCTCAGATAAAGAAGATGAGAATCTGCATAAAAACAAAGAggaacagaagaagaagaagaagatcgAGGAGAATGACCTGCCAAATCCTAGTGAATTGTGGGCCAATGACAAAGACAGTGAGGAGAAACAACAGAATGAAGCCCTTTATATGCAAATGCATTCCAACGTAATCTATGACAGTGCCCCCAGAACCCGCCGCAACGCCAAGGGCAACCACTGCAAGAGGACTTCGCTTTATGTGGAATTTAAGGACATCGGCTGGGACTCGTGGATTCTGGCCCCACCTGGCTTCGAGGCATACACCTGCCACGGGGCGTGCTCTTACCCCATATCCTCACAACTAACGCCCACCAAACACGCCATAATCCAAACGCTCTTCAATCTGAAAAGCCCTCAGAAAGCCTCACAAGCTTGCTGCGTGCCCACCAAACTGGACCCCATCTCCCTTCTGTACGAGAATGAAAACGGTAACGTTATTTTCCAGCACAAGTACGAGGGCATGGTCGTGGCGGAGTGCGGTTGCAGATAGTATTGAAGACACAAGCGAAGACACATGAAACGTAACAAAAGAGATTGTTATCAAAGGATCAGATGTGAACAGATCACTGCACCGCAATAAACATTGATGTGACGGCTTTGCGTGACGGCTAACGCGTTAGCTAGCAAGTCtatgtaaaagtacagtataaaGAGACGACGTTGTCAGTAGCACAGGAGCATGTTGCTAAGCGAAGTATCCAAACAATGCATCCCCTCATGGAAAGactgctaagctaagctaaaaggAGCGGTGAAAGGACATTTACTTAGATTTCTCTCAGAGTAAATCTTTAACAATTGTATAATAAGCAAGCTAGAAGCATGCCTGTTTGTTTTACCAGCTGTGCACAGTGTCTTGCCACATGTATGCTATAAATATGGTATATAGTATTAATTTAAGTTCAAATACTGTACACATACAATATACTAGTAGttcaattattattaacaattgTGGAAGGTTGCCAGCATGACCACATTTTGAAACCACAAATTAGTCCATTCAGCGTGGGTGAGGTTGAACGTTTCACATCCAGAGTCGTAGCTACTGTTGCAAAAATGTCCATTCACTGCAGTTATAAAGAAACTTTagatgatgtgtttttttttagggtggGAATAAAGAGATTTAGCAGAATCATCTTTACAGCcattcacaatttttttattgcgGTTGCCAGACAGGACAAAGAGGACACACCtgagaacacaaacacaccagacagttctggtgaagCAGATCCGAGccatttgtcaaaaaaaaa

Function

GO:

id name namespace
GO:0072359 circulatory system development biological_process
GO:0007507 heart development biological_process
GO:0003007 heart morphogenesis biological_process
GO:0032501 multicellular organismal process biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250237.3 True 2368 mRNA 0.49 2 3170196 3173556

Neighbor

gene id symbol gene type direction distance location
LOC111195007 LOC108435126 coding upstream 14081 3142848 ~ 3156115 (+)
LOC103030033 NA coding upstream 38560 3125086 ~ 3131636 (+)
LOC103031401 LOC108435143,LOC108276558 coding upstream 45944 3098197 ~ 3124252 (+)
LOC103030349 LOC108435127 coding upstream 85191 3063895 ~ 3085005 (+)
LOC103031719 NA coding upstream 107824 3052035 ~ 3062372 (+)
LOC103029394 smad4a,LOC108435141,LOC107559658,LOC107668639,LOC107741365,LOC104924734,LOC107373891 coding downstream 4822 3178378 ~ 3189700 (+)
LOC103042678 NA coding downstream 1068612 4242168 ~ 4244029 (+)
LOC111195096 NA coding downstream 1159317 4332873 ~ 4337695 (+)
ranbp3l NA coding downstream 1181378 4354934 ~ 4379352 (+)
LOC103029159 NA coding downstream 1209575 4383131 ~ 4389029 (+)
G173045 NA non-coding upstream 6618 3163372 ~ 3163578 (+)
LOC103032978 LOC103033194 non-coding upstream 240941 2914789 ~ 2929255 (+)
G172914 NA non-coding upstream 394178 2774888 ~ 2776018 (+)
G172913 NA non-coding upstream 395360 2774543 ~ 2774836 (+)
G172906 NA non-coding upstream 477065 2667370 ~ 2693131 (+)
G173048 NA non-coding downstream 25223 3198779 ~ 3199215 (+)
G173049 NA non-coding downstream 27007 3200563 ~ 3200788 (+)
G173050 NA non-coding downstream 27318 3200874 ~ 3201620 (+)
G173079 NA non-coding downstream 205323 3378879 ~ 3379158 (+)
G173090 NA non-coding downstream 687549 3861105 ~ 3862194 (+)
LOC103031931 LOC103031931,LOC108435131,LOC104953549 other upstream 444120 2718609 ~ 2726076 (+)
G172770 h2afvb,h2afva,LOC107386217,LOC105007341,LOC107668744,LOC107599604,LOC103039302 other upstream 1172834 1994708 ~ 1997362 (+)
G172725 ogdh,LOC107554543,LOC107714098,LOC107656768 other upstream 1314442 1853282 ~ 1855754 (+)
LOC103041266 NA other upstream 1319980 1839351 ~ 1850216 (+)
G172552 NA other upstream 1541391 1626799 ~ 1628805 (+)
unc5c unc5c,LOC108435138,LOC108277026,LOC105911728,LOC106564027,LOC105025160,LOC106568183 other downstream 291577 3465133 ~ 3739736 (+)
G173094 NA other downstream 566746 3740302 ~ 3743205 (+)
G173111 LOC108435134,LOC108277016 other downstream 735386 3908942 ~ 3931991 (+)
gdnf gdnf,LOC107653769,LOC107752627,LOC107692037,LOC107569368,LOC107727951 other downstream 944478 4118034 ~ 4130482 (+)
G173397 NA other downstream 1570013 4743569 ~ 4744249 (+)

Expression


Co-expression Network