mier3 (mier3,mier3a,LOC108441071,LOC108277354,LOC107568605,LOC107665797)


Basic Information

Item Value
gene id mier3
gene name mier3,mier3a,LOC108441071,LOC108277354,LOC107568605,LOC107665797
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 2094562 ~ 2103944 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250257.3
CGTAAAGCCCGTTTAGTATCAGAGAGGTACCAATATGGCGGAGgcTTCCTTGGGAAGTACAAGCCCAGttggcTCTTTGTCATCAGAAGATCACGACTTTGATCCAACAGCAGACATGTTGGTTCACGATTATGATGATGAGCATACTCTGGAAGAAGAGGAGATGAGGGAAGGAGAGTCGAACGGGAGTTCGGAGATCGCAGATCTGGAAAAGGAGGGGAACATGCCATTGGACGAGCTGTTGGCCTTGTATAGGTATGAGCCGTCAGTCAGCACGGTTGGAGGCTCGAGTGTGGACAGCTCTTCAGTGGAACTGACGGATGACTTGCCCGATATGACTCTAGACAAAGAGGAGATAGCTAAAGATTTGCTGTCTGGAGATGATGAGGAAACTCAGTCCTCCGCTGACGACCTCACACCATCAGTGACCTCGCACGAAACCACAGATTTCTTCCCCAGAACTCTGCGCTCTAACACTATTTATGATGGAGATAAAGAGTCTGAGGGTGAGGAGGACGCTTTAAACGCTGAGGACTCTCGGAAGGAGATCATGGTTGGATCTCAGTATCAGGCTGAAATTCCCTCCCTCACCTGCTATGATGAACATGAGAAGGTGTATGAGGATGAAGATCAGTTACTGTGGCAGCCGGACGTTTTACCAGAGTGGAAAGTGAAGGTTTTCTTGCAAGAGGCGACTCAGTCAGGAGCTGATGGACACGGAGAAGGTCTTGTTAAAGACAATGAACAGGTTCTGTATGAGCTCGTTAAATGCAACTACAATGTCCATGAAGCTCTCGAACGATTTCGCAACAATGAAAAATCCTCAAAAGGCGAGATGCTCCCGTGGTCTGAAGAAGAATGCCGGAATTTTGAACATGCTCTTCTTTTATACGAGAAGAACTTTCACCTCATACAGAAGCACAAAGTGCACACAAGAACTGTGGCAGAATGCGTCGCGTTTTACTACATGTGGAAAAAGTCAGAACGGTTCGACTTCTTTGTCCAACAAAATCGGTTTGGGAAAAAGAAGTACAGCAGCTACCCTGGAGTAACGGACCTGATGGACCGGCTGGTGGATGAAGCAGAAGGTCTGGTGGACGGCTCCGTCTCTGTTTGCTCCAGCAGCAGCGGCAGGATAGAGCCCTCAGCCGACCAGCAGCTCAACATCCTCAACTCCATCACCGCCAGTGACCTCTCCGCACTAACCAGCAGCGTGGCGTCAGTGTGCAACTCGGGAGACGTGAGCTGCCTGGATTCCTACAACTTCTCCTCGCTGGACGGCCTTCACCGCGGACCCCTGGGCCACGACGAGCCCCTCGGCTTCTCCGGGAACGGAGAAGGAGACTGCCTGAACCTGCTGGACTCCGGCTTCTACCACTCGGACCTGGGGCAGCTGAACGTGTGCAGCGAGGACTGCGAGAGGCCGCCGGTCAAGAGGCTGAAGATGGGCCTGTCGGAGCCCTTCCTGAACGAGGTGGCGGTGGGCAGCCGCAGCATGGGCGTCGACTTCGAGGGCCGCACGCACCACATCACCAGCGCCAAAATGGCCGTTTCCGTCACTGACTTCGGCGGCCTTTCTGCGGGAGAGGCCGGCAGCTACATGGGCAGCCACACACTACATCAGCACACGGCGCTGCAGTCCGAGTGACCTCCCTCCGCCCCCCACGTGACCTTTTGCAATTACACCCGTGTACATAGCCGCTCACTGGAAATTCAACTTTCAAACTTTTGTTTTTGGGCcgttgttttgtttattaattgtgtacatgtgtgtgtaaatatgtacagATTCCTTTTTTTACTCTGACATCAGTGATGTCTTATTGTACAGACCTTAATCTTGAGTTCTCAAGAGTTAATAATACAGCCATTTAGTCCGGAATATTTTGGAACGTGTCGTGTATCCTGTCCGAATACTGTGGAAGCTGAACTCGTGGAGGACTTTCACTTCACATCGATAGTTCCCACAAGAGTCGCAGAAGCTAGTCTGTCGTCCCCCATCCATTTCCCTGCTTTTTACCAATGATGGGATGTCCTGCCCGTGGTGCACCGACGGCACCTGCAGCGGTGACCTGTACCCACTCTCTGGCTCAAATATGAAGCTTTTATGTGAAAAACTTAATGGTGAATTGAGGTGTTTTGTTTCCTAAAGGTGCAAGACTGGTTAACACCATGGCATCCATCACTCTTCCACATACGTTGTTCTGTATGTGGTTCTAATTTTTAATGCAGTAAATGCATTAGACACCTAAAGAGtcaagaaaatatttaaaattaagtttatataaaaataacatttaagaaaatATACAAGTATGCCCATACTTGGCGCCCTGGGGTTAATTAAATTTTCGCGttctgtggtaaaaaaaaaaaatgtttagaatactatacattttattctataaacatttttcaTCTAAATAATCTCTAGATCTCTTAATTATAAGGTCTTTTAAGAGTCAAAATATTCAGAATAAACATAAATGCTAAACGTAAGCTTAAGAAAAAAGATGGTGAAGCAAATTATCCTAAACATATTCATTTACCAAATAAAGATAGAGgtgattttctaaaaaaaaacaaaaaaaaaacccttacaTTTAGACCTAAATATGGGCATACGCAACATTTTACAGACTACAAACTGACGAAAATCAGTGGTCTACATAAATAAATGGTCATTTAAGCTTTACTGAAGCTGcaacaaagataaagataaataaatgatcagCATCATTAATTTCCCTCCTCAACCCCTCTAGATATTTCCCCTTCAGATGGAAGGAAAACCCTGCGACGAAGTGTGTGATagacatttaattttttgtatcttatttatttgtgctCTTTCTATGCTCCCTTTTGCAAGTCTCTTTGTAGTCACTGAAAAACTGGTGGTATATCGTTTTGTTGGGGGGTATTTATTGCTATAAAAAGACCGTTGGACTGCACATTGGTCACTACGGAGCAAACAAACCTTAGCTGTACTCTTAAGATCCTCCTTTTTTGGAAAGGAGAAGAATAATTGTGATGTTTTACTGGCTTTGTTGCAGTGTGTTCTGAGACCAGTTGTTCTGTtcctttgttttgttctttaggAGAGAAACACATTTTACTTAAGTGCAGTGCAAGAGCTTTGCCACAAGGGGGCACTATTGCAACAGTCCTCTATCGCCCCCTTGAGTACGGAGTGTTTGAACCACCGACATTATACCAACTACATTATAACGTATGCTGATTTTTTACAGCAGGTCCGTATATTTGCAGAGCATTGGCGTTTTTGCGTTTGCGTCTTCAGTAAAATACGTTTCGACCCTTGAAGTTACTATATTGAGTTGAGCTATAATCGTTTGCATGTGgctatcattttattttaattttttttcccctcataaGGAAAGAAACGATTATCTCCTCTAAACGATTAACGCATTATAATGCCAGTTCTACGTGTTTAGAGCTATATTCCCATTGACTGACTGACCAACTGACCTCTTTCTGTGGCCCCCAAACCACCTTCCTGTTCTTTTCACTGCCAGGTTTTGTTTTAAGATGTTGTTCGGAGGGTCTCTGCTAGTTTGTAGTGCTGTAAGACAGTTTAAGGGAGATCCTCAAAGGAGAACATACGCACTCGTACTCGCGTATGTGTTTACGGTGATGTCGAATTAAATTCTATTCTATCTA

Function

symbol description
mier3a Predicted to enable histone deacetylase binding activity and transcription corepressor activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be active in nucleoplasm. Orthologous to human MIER3 (MIER family member 3).
mier3 Predicted to enable histone deacetylase binding activity and transcription corepressor activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Located in nucleoplasm. Part of protein-containing complex.

NR:

description
mesoderm induction early response protein 3

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250257.3 True 3687 mRNA 0.45 13 2094562 2103944

Neighbor

gene id symbol gene type direction distance location
ash2l ash2l,LOC107704134 coding upstream 21259 2056365 ~ 2073303 (+)
ddx56 ddx56 coding upstream 75823 2009660 ~ 2018739 (+)
LOC103032544 NA coding upstream 101230 1990765 ~ 1993332 (+)
polm polm coding upstream 113428 1974245 ~ 1981134 (+)
LOC111194965 mrps24 coding upstream 132948 1959085 ~ 1961614 (+)
pdxp pdxp coding downstream 7044 2110988 ~ 2115322 (+)
LOC103035434 LOC103035434,LOC108441064,LOC108277206,LOC557306,LOC107687378,LOC107568610,LOC107665788 coding downstream 112074 2216018 ~ 2232907 (+)
epb41l4a epb41l4a,LOC107653778,LOC107709672,LOC107692020 coding downstream 730297 2834241 ~ 2897371 (+)
LOC103033517 srsf9,LOC107560829 coding downstream 827111 2931055 ~ 2936876 (+)
LOC103030660 LOC108435150,LOC108277167 coding downstream 869813 2973757 ~ 2997663 (+)
G172782 NA non-coding upstream 50623 2042725 ~ 2043939 (+)
G172767 NA non-coding upstream 71742 1987991 ~ 2022820 (+)
G172763 NA non-coding upstream 90137 1999389 ~ 2004425 (+)
G172756 NA non-coding upstream 129958 1962721 ~ 1964604 (+)
G172741 NA non-coding upstream 182837 1904782 ~ 1911725 (+)
G172789 LOC108441067 non-coding downstream 21610 2125554 ~ 2130319 (+)
G172800 NA non-coding downstream 34695 2138639 ~ 2227606 (+)
G172898 NA non-coding downstream 403537 2507481 ~ 2507692 (+)
G172899 NA non-coding downstream 477466 2581410 ~ 2581838 (+)
G172903 NA non-coding downstream 509282 2613226 ~ 2613513 (+)
G172770 h2afvb,h2afva,LOC107386217,LOC105007341,LOC107668744,LOC107599604,LOC103039302 other upstream 97200 1994708 ~ 1997362 (+)
G172725 ogdh,LOC107554543,LOC107714098,LOC107656768 other upstream 238808 1853282 ~ 1855754 (+)
LOC103041266 NA other upstream 244346 1839351 ~ 1850216 (+)
G172552 NA other upstream 465757 1626799 ~ 1628805 (+)
G172517 NA other upstream 552411 1507320 ~ 1542151 (+)
LOC103031931 LOC103031931,LOC108435131,LOC104953549 other downstream 614665 2718609 ~ 2726076 (+)
unc5c unc5c,LOC108435138,LOC108277026,LOC105911728,LOC106564027,LOC105025160,LOC106568183 other downstream 1361189 3465133 ~ 3739736 (+)
G173094 NA other downstream 1636358 3740302 ~ 3743205 (+)
G173111 LOC108435134,LOC108277016 other downstream 1804998 3908942 ~ 3931991 (+)
gdnf gdnf,LOC107653769,LOC107752627,LOC107692037,LOC107569368,LOC107727951 other downstream 2014090 4118034 ~ 4130482 (+)

Expression


Co-expression Network