Gene
RNA
| Item | Value |
|---|---|
| gene id | G69265 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000012 |
| NCBI id | null |
| chromosome length | 13770000 |
| location | 718894 ~ 719184 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU78991 | True | 291 | lncRNA | 0.42 | 1 | 718894 | 719184 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000012_00689933_00695237 | NA | coding | downstream | 23630 | 689094 ~ 695264 (-) |
| CI01000012_00686760_00686993 | NA | coding | downstream | 31901 | 686521 ~ 686993 (-) |
| CI01000012_00647774_00648451 | NA | coding | downstream | 69949 | 647586 ~ 648945 (-) |
| CI01000012_00520655_00552630 | NA | coding | downstream | 165074 | 520139 ~ 553820 (-) |
| CI01000012_00427641_00472235 | NA | coding | downstream | 246317 | 427573 ~ 472577 (-) |
| CI01000012_00863269_00864644 | NA | coding | upstream | 142856 | 862040 ~ 865072 (-) |
| CI01000012_00866804_00867133 | NA | coding | upstream | 146801 | 865985 ~ 867133 (-) |
| CI01000012_00904582_00908136 | NA | coding | upstream | 185267 | 904451 ~ 909518 (-) |
| CI01000012_00955355_00975846 | THADA | coding | upstream | 236171 | 955355 ~ 975880 (-) |
| CI01000012_01032204_01034843 | NA | coding | upstream | 312785 | 1031969 ~ 1034843 (-) |
| G69264 | NA | non-coding | downstream | 127 | 718491 ~ 718767 (-) |
| G69263 | NA | non-coding | downstream | 699 | 717930 ~ 718195 (-) |
| G69262 | NA | non-coding | downstream | 1583 | 716993 ~ 717311 (-) |
| G69237 | NA | non-coding | downstream | 32732 | 685576 ~ 686162 (-) |
| G69234 | NA | non-coding | downstream | 40419 | 677919 ~ 678475 (-) |
| G69291 | NA | non-coding | upstream | 31514 | 750698 ~ 750997 (-) |
| G69293 | NA | non-coding | upstream | 32530 | 751714 ~ 752460 (-) |
| G69297 | NA | non-coding | upstream | 37622 | 756806 ~ 757029 (-) |
| G69305 | NA | non-coding | upstream | 50475 | 769659 ~ 769909 (-) |
| G69332 | NA | non-coding | upstream | 56226 | 775364 ~ 775879 (-) |
| G69161 | NA | other | downstream | 130879 | 587604 ~ 588015 (-) |
| G69150 | NA | other | downstream | 151938 | 565463 ~ 566956 (-) |
| CI01000012_00178282_00181473 | NA | other | downstream | 538932 | 178182 ~ 183012 (-) |
| G69277 | NA | other | upstream | 10736 | 729920 ~ 730465 (-) |
| CI01000012_01139864_01192154 | TTC7A | other | upstream | 416492 | 1135676 ~ 1192154 (-) |
| G69562 | NA | other | upstream | 612891 | 1332075 ~ 1376298 (-) |
| G70774 | NA | other | upstream | 2147324 | 2866508 ~ 2866892 (-) |
