polm (polm)


Basic Information

Item Value
gene id polm
gene name polm
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 1974245 ~ 1981134 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250263.3
GTATTACAGGACAATTCGTTATGCTGAGCGTTTCTGAAGAAAAAcctgttttttctgtgtaaCTTCATTACTGAGAGTAACAGCCGCTCAGTgtgactgactgactgcagCTCACTGACAGATTAGTGATTTGATGCCTCCACGTGTCTCAATGTAGAACTGCACTAGAGTTTCTTGGTCGAAATTTTTGAGACGGAGCCGCCAAATTGTAGGCTCTGTAGTGAACAAGTGAGCATGGAGCTTTTTGAGACGCACCCCAGTGTCGGCACAGTCTGCGCAGGCGTGCTGTAGAAGTGCAGGGTGAGATGTCAGCCTGAGTTTTTCACTCTGTAGctgctgttattatttttacaggcTCTGTCAGGACAAATGGAGGGGTTTTGTTcgttacagtaaatattattatacagtttattcagCTAATAAATATCCAGCAAAGTCTATAGTGTGAGCAGAGCAGCGCTATGGTTCCCCTAAAGCGCAGGAAATTAACAGCAGCTCAAACTGAAAACCAGGACAATAAAGTCTGTAAATTTCCAGATATTACTGTTTATATCGTGGAAAGAAAGATGGGAGCATCTCGAAAAGCTTTTCTTACTCGACTCGGGAGGAGTAAAGGTTTTCTGATTGAGGAAACTTACAGCTCTTCCGTCACTCATGTTGTATCAGAAAGTAACACTGGAGATGAGGTTCAGGCCTGGGTTAATAATCACACTGAGGGAAAAGCCCTGACTGACTCCATCCACCTGCTGGACATCAGCTGGCTGACTGAGAGCATGGCTGAGGGAGGACCTGTAGCCGTGCAGGACAGACACAGGTTAAAGACCAGTCTGAAGTCCTCTGAAGACACTCCATCATTCACAGTGAAGAGTTACGCCTGCCAGAGAAGAACTCCTCTAAAACACCACAATACATTTTTGACAGAAGCTCTGGAGATTTTGGCGGAAAATGCTGAGTTTGGTGAGAATGAGGGCAGGAGTGTGGCGTTCCGGCGCTCGGCGTCTGTCCTGAAGGCCCTTCCGTATGCAGTGCGACAGATGGACGACCTGAAGAACTTGCCCTGTCTGGGTGAGCACTCACAAAGAGTCATaaagGAGATTTTAGAAGATGGCTCATCAAGGGAAGTGGAGTCAACGAGACAGTCGGCGCAGTTCCAGGCCATGAAGGCGTTGACGGGAGTGTTTGGAGTGGGAGTGAGGAGTGCTGACCGCGGGTTTAGGGAAGGCCTGCTATGCCCATCAGATCTGATACGTACTGGACAAAAACTGAACAAAGCACAGCAAGCAGGAGTGCAGTATTATGATGATCTGAACAGACCGGTCACTAAGCAGGAGGCTCTGGCCATCAGTCAGATAGTGGAGAGAGCAGTGAATTCTGTGCTTCCTGGATCCATCATTACTCTCACTGGAGGATTCAGAAGGGGTAAGGAGGTGGGGCACGATGTGGATTTCCTCATCACTCATGAAGAGGAGGGGGTGGAGGAAGGGTTGATGCCCAAACTGGTGAACTGGCTGGATGAACAGGGTTTTCTGTTGTATCAGAAAACGACCCGGAACTCTTACCTGGAGAGTAAAGACGGACCTGCCCGTCCTCCTAATAATATGGACCGATTTGAGAGGTGCTTCTCTATATTTAAACTGGGACAGTGTTCAGAGGACAGCAGTGCAGTTCTAGAAACTGGTTCTGATGACTCTGGCACCACGGACAACGTCAACGGGACAACTAGACAACAGCCTGGATCTTCCTGGAGAGCGGTGCGAGTGGACCTGGTGGTCAGCCCATTCAGCCAGTTTGCTTTTGCCACACTTGGCTGGACAGGATCCAAGCTGTTTGAGAGGGAGCTGAGGCGGTGGGCGGGGCAGGAGAAGGGCATGTCTCTGAGCAGCCACGCCCTCTACGACAGCAAACAGCAGCGTTATCTTCGGGCGAACTCAGAGGAGGAGATCTTTGCCCACCTGGGTCTGGAGTTTATCCCCCCCTGCGAGAGGAACTCCTGACCTTCTTCAGTCCAGCCTCGATCCTCTACAACCTCAACTACCTTAGCACCTCCACCATCCTCCATTTAGCACGGGTCAGATCATTTTATCTCAGGACAAATGACCTTAAACTAACTATAGACTTCATGACTTCATGAAGTATTTGAACATTGTGACGCTGCATTTAtttagaaatgcttaaaaataggattttttatattataatctgTTAAGATGACTGTCcgctaggggtgggcaata

Function

symbol description
polm Predicted to enable DNA-directed DNA polymerase activity. Predicted to be involved in double-strand break repair via nonhomologous end joining. Predicted to act upstream of or within DNA repair. Predicted to be active in nucleus. Is expressed in pleuroperitoneal region and thymus. Orthologous to human POLM (DNA polymerase mu).

NR:

description
DNA-directed DNA/RNA polymerase mu-like

GO:

id name namespace
GO:0016779 nucleotidyltransferase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K03513 POLM; DNA polymerase mu

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250263.3 True 2237 mRNA 0.48 11 1974245 1981134

Neighbor

gene id symbol gene type direction distance location
LOC111194965 mrps24 coding upstream 12631 1959085 ~ 1961614 (+)
LOC103042387 LOC108410540 coding upstream 207320 1760477 ~ 1766925 (+)
dusp26 dusp26,LOC107720817 coding upstream 220488 1747521 ~ 1753757 (+)
LOC103043725 bcl7a,LOC108410533,LOC107704131,LOC107706784,LOC107722340,LOC107554537 coding upstream 255298 1713634 ~ 1718947 (+)
LOC103044833 LOC108410534,LOC108276727 coding upstream 261320 1709405 ~ 1712925 (+)
LOC103032544 NA coding downstream 9631 1990765 ~ 1993332 (+)
ddx56 ddx56 coding downstream 28526 2009660 ~ 2018739 (+)
ash2l ash2l,LOC107704134 coding downstream 75231 2056365 ~ 2073303 (+)
mier3 mier3,mier3a,LOC108441071,LOC108277354,LOC107568605,LOC107665797 coding downstream 113428 2094562 ~ 2103944 (+)
pdxp pdxp coding downstream 129854 2110988 ~ 2115322 (+)
G172756 NA non-coding upstream 9641 1962721 ~ 1964604 (+)
G172741 NA non-coding upstream 62520 1904782 ~ 1911725 (+)
G172737 NA non-coding upstream 84649 1888542 ~ 1889596 (+)
G172736 NA non-coding upstream 85781 1885208 ~ 1888464 (+)
G172733 NA non-coding upstream 92210 1865101 ~ 1882035 (+)
G172767 NA non-coding downstream 6857 1987991 ~ 2022820 (+)
G172763 NA non-coding downstream 18255 1999389 ~ 2004425 (+)
G172782 NA non-coding downstream 61591 2042725 ~ 2043939 (+)
G172788 NA non-coding downstream 79964 2061098 ~ 2106334 (+)
G172789 LOC108441067 non-coding downstream 144420 2125554 ~ 2130319 (+)
G172725 ogdh,LOC107554543,LOC107714098,LOC107656768 other upstream 118491 1853282 ~ 1855754 (+)
LOC103041266 NA other upstream 124029 1839351 ~ 1850216 (+)
G172552 NA other upstream 345440 1626799 ~ 1628805 (+)
zswim6 zswim6,LOC108425190,LOC107704169,LOC103369940,LOC107706746,LOC105014808 other upstream 429289 1383495 ~ 1544956 (+)
G172770 h2afvb,h2afva,LOC107386217,LOC105007341,LOC107668744,LOC107599604,LOC103039302 other downstream 13574 1994708 ~ 1997362 (+)
LOC103031931 LOC103031931,LOC108435131,LOC104953549 other downstream 737475 2718609 ~ 2726076 (+)
unc5c unc5c,LOC108435138,LOC108277026,LOC105911728,LOC106564027,LOC105025160,LOC106568183 other downstream 1483999 3465133 ~ 3739736 (+)
G173094 NA other downstream 1759168 3740302 ~ 3743205 (+)
G173111 LOC108435134,LOC108277016 other downstream 1927808 3908942 ~ 3931991 (+)

Expression


Co-expression Network