denr (denr,LOC107722339,LOC107706783)


Basic Information

Item Value
gene id denr
gene name denr,LOC107722339,LOC107706783
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 1704504 ~ 1709183 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250280.2
GTTCTCCTCGCTATACGATCTGTGGCGGTGAGCCGTTGTGAGGACCCCACGCTCCAGCCTGTGGAGGTGTGCTCTGGAGCTGAAGTGCTGCTGTTTCTGGAATAATCACTGAAAACGTCTCTTAAACGCCCAATTAATAATGCTCGAGCTTTCACTGAGCAGAAAgcagcactgagagagagagttcagcaGatTAACAGAATATGGCTACTACTGAGAATGCAGAGTCAGGCTCACCGGAGAACAAAGTGGATCGGGCCGACCCAGATGCAAAGTACCCTCTGAAAGTGCTTTACTGCGGAGtatGCTCCTTGCCGACAGAGtACTGTGAGTACATGCCTGAGCCAGCGAAATGCAGACAGTGGCTCGAGAAAAATTTCCCTGATGTTTTTGCTAGAATGACTCTTGGAAAAGGAAGTGCACCCAAGCAGGAAAcaggaggtggtggtggaggtggagaggcgccccctgctgtagaggaagaggagaagaagaagcagaaaagaGGTGGTCGAGGTCAAAtcaaacagaagaagaagactgTTCCCCAGAAAGTGACGATAGCGAAAATCCCCCGGGCTAAGAAGAAATACGTGACGCGGGTGTGCGGCCTGGCCACCTTCGATATCGACCTTAAGGAGGCTCAGCGGTTCTTTGCTCAGAAATTCTCCTGCGGTGCCTCAGTGACCGCAGAGGATGAGATCATCATTCAGGGAGACTTTACAGATGACATCATCGATGTTATCCAGGAGAAGTGGCCTGAGGTGGATGATGACAGCATTGACGATCTTGGAGaagtcaaaaagtgaaaaccCCAACTTACACTTTTACCGAAACGGATGCGACCCGACACAAAACACGGCCAAATTTACACATTCAGTcgttttatatctattttatttactgtatagaaAACGATGGACTTGGCCTCATCCTTGgcattttggttttgttttgttatcaTTTCTAGATAGCTGCTTCTTCTCTTGGTTGCCAAAGGTCTGGTATGATGTGAATATCTCTAACACTTCACTCAAACAAACTGTAGGCTAATAAATTTCTGTCTCATTgcc

Function

symbol description
denr Predicted to enable mRNA binding activity. Predicted to be involved in formation of translation preinitiation complex and translation reinitiation. Predicted to act upstream of or within translational initiation. Is expressed in midbrain; myotome; optic vesicle; and retina. Orthologous to human DENR (density regulated re-initiation and release factor).

NR:

description
PREDICTED: density-regulated protein

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K24272 DENR, TMA22; density-regulated protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250280.2 True 1073 mRNA 0.47 8 1704504 1709183

Neighbor

gene id symbol gene type direction distance location
snrnp35 snrnp35,LOC107658469 coding upstream 38293 1663256 ~ 1666211 (+)
LOC103046457 kmt5a,LOC108425183 coding upstream 42683 1657106 ~ 1661821 (+)
LOC103035435 LOC108425189,LOC108276927,LOC107706776,LOC107554527 coding upstream 171735 1517362 ~ 1532769 (+)
LOC111195000 LOC108425194,LOC107653585,LOC107704125,LOC108277218,LOC107709189,LOC107602252 coding upstream 615414 1064732 ~ 1089090 (+)
LOC103021728 NA coding upstream 825613 869531 ~ 878891 (+)
LOC103044833 LOC108410534,LOC108276727 coding downstream 222 1709405 ~ 1712925 (+)
LOC103043725 bcl7a,LOC108410533,LOC107704131,LOC107706784,LOC107722340,LOC107554537 coding downstream 4451 1713634 ~ 1718947 (+)
dusp26 dusp26,LOC107720817 coding downstream 38338 1747521 ~ 1753757 (+)
LOC103042387 LOC108410540 coding downstream 51294 1760477 ~ 1766925 (+)
LOC111194965 mrps24 coding downstream 249902 1959085 ~ 1961614 (+)
G172576 NA non-coding upstream 6994 1694865 ~ 1697510 (+)
G172548 rilpl1,LOC108410543 non-coding upstream 27078 1674159 ~ 1677426 (+)
G172522 NA non-coding upstream 234602 1436426 ~ 1469902 (+)
G172513 NA non-coding upstream 272621 1356795 ~ 1431883 (+)
G172600 NA non-coding downstream 64042 1773225 ~ 1776601 (+)
G172733 NA non-coding downstream 155918 1865101 ~ 1882035 (+)
G172735 NA non-coding downstream 165618 1874801 ~ 1875147 (+)
G172736 NA non-coding downstream 176025 1885208 ~ 1888464 (+)
G172737 NA non-coding downstream 179359 1888542 ~ 1889596 (+)
G172552 NA other upstream 75699 1626799 ~ 1628805 (+)
zswim6 zswim6,LOC108425190,LOC107704169,LOC103369940,LOC107706746,LOC105014808 other upstream 159548 1383495 ~ 1544956 (+)
G172517 NA other upstream 162353 1507320 ~ 1542151 (+)
LOC111194999 pitpnb,LOC108425199,LOC107602250,LOC107709228,LOC107706770,LOC107704163,LOC107653151 other upstream 838128 843788 ~ 866376 (+)
LOC103038248 NA other upstream 1118306 579323 ~ 586198 (+)
LOC103041266 NA other downstream 130168 1839351 ~ 1850216 (+)
G172725 ogdh,LOC107554543,LOC107714098,LOC107656768 other downstream 144099 1853282 ~ 1855754 (+)
G172770 h2afvb,h2afva,LOC107386217,LOC105007341,LOC107668744,LOC107599604,LOC103039302 other downstream 285525 1994708 ~ 1997362 (+)
LOC103031931 LOC103031931,LOC108435131,LOC104953549 other downstream 1009426 2718609 ~ 2726076 (+)
unc5c unc5c,LOC108435138,LOC108277026,LOC105911728,LOC106564027,LOC105025160,LOC106568183 other downstream 1755950 3465133 ~ 3739736 (+)

Expression


Co-expression Network