LOC103044833 (LOC108410534,LOC108276727)


Basic Information

Item Value
gene id LOC103044833
gene name LOC108410534,LOC108276727
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 1709405 ~ 1712925 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250281.3
CTTTAAATATCCTTTAAAAACTGTTACATTCTTTTATTAAACCTAAAGGCCTTCATTTGTCCTAAAACGTCTTAAATCAATCTCCAACATGTCATAAAAATACCACAGACAGTAAAcacaatttagtttttttttctctccatgcATTACTTTTCACAGTtctcaaatttatttttaatatagtttaCTGATTTAACAGCAGAATGAACTaagctgaaaaaatatatttttgttcggCTGTGTGTTAATATTGTATCATGAGATGCTCATGAAAGAATTGGAAGTAGTGTGCTTTCTGAGCACATTTATtaagttagcagcagcactcaACTAGCAAACCAGGAAATGTTGTGGGTTACATATCAAACCTAATAAAAGTCAGTTTATATGAACCTGACCTTCTGTGTATATAGATAGACTTGATTTAGTTTCCGCAGAAGCGTAAATGTTTTATGGCTATGCAAACCAGCCCTGTCTGTTATGTGTTACATAATACTTTAGAAAATAGACAAATGCAAATAGTGCAGTAATTTTCCTAACATGGAACATTCCATGCTACTTAGtgctataaaattacagttacagttatttttttaatctcttctCCAGTTTGGAGGGCCACTTACCAATCCCCTTTCATATGAACTTCCTCCATCACTTGCAAACCCCTCTACAATAAGAGGGAAAGGCTGAGCATATACCTCCAACTACACTGCAAATGATCACAGAAGTATGTTCTTGGTAACATGACATGACAGCTAAACAAGTCAAgaatctgtcaaacatggtggtggcagggCTGTGGAAGTAGCATGTACAGTACGTTTAACAGCTGCCAGTAGATATCTGAGTCCCTGGTGTTTATGGATGATATTAAGAAGATCTACAGCTTCTAAACACTGAtagtatatttttaagaatcagtacagtattgcaaaacatctCAATAATACAACACATCAACATTTTCTTACATATCTATAATTTACAAAACTAATAGTAGAGCACTTCAATGTACAGATGGATGAAGGCCTAAACCATACCTCTCAACCCAATAAAGagtctttttttacttattgaAGACAAAAACATAATCCCAgatcatgctctctctgggtgggtacagtagattcCAGTTTGAGGTCTTCTGGCCGGCACAGGCgactgttagctgatgtatcagagttgGGGACCCGGCACGTTCCTTTAAGCACTCTGAGTCTGTCTAGTGATGCTACATTGATTGTGGAGGCAGTTGGAAATGAGGCAGGCGCTAGTTCTCACCCTCTAGTGATATCTTGATACCTAATGGGTAGGTGAGGGTAATTGGACTTCCAAATagtgtattatactgtattcaGGACAGTTGCAAACCCATACGAAGAGAAAGTCTCATGTTGATCATGTTTGTTCTGTGTTTCTTATATTCTTTAACTGGTAACAGTGAACAGTGGTTTTCTCAAGGGAGGAGTGTTATGTGTcctatgtgtgtatataatttataataataattaagaagCAGGACGCTTAATTCCCTGTGGCTTTAGTCCCTCTTGAGATCATTTCCACCCAACACCTGGGTTTTGTTGTGGATGATCATGCTTTCTGCTTTATCATTTGCATGAGAGCAAACACAAGAGAACTGGTCCCAGACGCTTCATCAGTTCCCAGTGCGCTGGAACGAAGCCGTGGGGAGGTAGACAAAAGTTCTCAGGCTGAAGTTCCAAAGCTCATTTGCTTCATCGCTGGCCACATGGCGAACACTTCGGTGTGCTGTGCTTTTGATTCACCCATCCTGGACCAGGTTCTCCCTCCTGTCCTTTTCCTGGAGTTTATTTTCGGCCTCTCTGGGAATGTTCTGGCCCTGGTGATGTTTGCTTTCCACATGGACACCTGGAAGCCCAACTCCATCTACTTGGCTCACCTGGCTGTAGCCGACTCAGTGGTCCTCTTCTGCCTGCCCTTCAGGGCTGACTACTACCGCAGGGGTAAAAATTGGGTCTATGGAGACATCTTCTGTCGAGTTCTGCTATTCCTCTTGGCGGCCAATCGAGCCGCCGGCATCTTCTTCCTCACGGCTGTTGCCGTGGACCGCTATATCAAGATAGTTCACCCGCTTCACCGCATCAACCGGATGAACCTGTCCTACGCAATGCTCGTCTCCTGCGGCCTGTGGGCTGGAATCGTAGCCATGACAGCCTACCTGCTGAGCTCCCCGCACTTCTACTACAACCGAAATCGCACCCAGTGCGAGAGCTTCAACATCTGCATGGGAAACAACCCGCTCTCCAACTGGCACAACGCCTTCTATGTCATCCAGTTCTTCGTGCCCGGAAGCATCGTCGTCTTCTGCACGGCTTGCATCACCTGGCAGTTGAAGATCAAGACCATGGACACCCAGGGCAAGATCAAGAGAGCCGTCCAGTTCATCTTCGTGGTCGCTCTGATCTTCATCATCTGCTTCTTCCCAAGCACCATCTCCCGCATCGCTGTCTGGATCCTCAAGACCTGGTACAGCGAGTGCCCGTACTTCCGTGAGGCCAACCTGGCCTTCTACACGTCGGTCTGCTTCACCTACTTCAACAGTGTGCTGAACCCTCTGGTCTACTACTTCTCCACGCCAGCGTTCAGTGGAACTTTCCAGAAGCTTGTGCTGAAGCTTAGAGGAAAGAAGCCAGGCGAGCAGGTCAACGTAACATCTTCTGTAACAGGCAATTAATGCAAtgttaagaagaagaaaaagaatgtaaagaaaataaataaaaatactgttgaTATGCAATAcgccaatcagccataacattaaaataaatgacaggTGAGGTTAACAATATTGACTACTTAAGGGTGACGTCTTGAAGTATAACAAATGGACAAGAACCAAATTGAACTGTAATAGCTGAAGCACTGGAACACTGACcacagaacatctccaaaacatcaagcAACAGGTCTGGTAGAGTATTCCTAGTATGGACTGGTAAATATCTACAATATCTAAGtacaaaaagtgataaaaacCAACACAACCAGTGAACTGGGAACAAAGTCATGGGTGCTCAATGCTCTAGTGGATTCCAGGTTTCTATGGGTCTGTCAAAGTTGTTTTGGTGGCATGTAGGAGACCTACGCAATACACAaagcaggtggttttaatgttgtggctgatcagtgtatacTGCATATGCAATACAATTGTTACACAGAGGATATAcgatatattagtatatataccTGGATAATGTGCCACTGAACACTTGTAGATGTGTTCAGAATGTATGTTGACTCTCAGTGTAATATGGTGATGTTTTAGAGGATAAGAAATATTTTTGTAAGCCCCTTTCAGActgatatatttaaacaggtttaaaataaataaatacatacattaattCTTCTCTGTTCTGTCTTTCAGTTAATGTGGTATATCACGGTTACACAGGGAAAGCATTTAAAGAAGATTTAAACATTACACTAAAGTTAGAGTTCggccacattttttaaatccatgTTTCAAataa

Function

NR:

description
PREDICTED: hydroxycarboxylic acid receptor 2-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K08402 HCAR2_3, GPR109; hydroxycarboxylic acid receptor 2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250281.3 True 3521 mRNA 0.42 1 1709405 1712925

Neighbor

gene id symbol gene type direction distance location
denr denr,LOC107722339,LOC107706783 coding upstream 222 1704504 ~ 1709183 (+)
snrnp35 snrnp35,LOC107658469 coding upstream 43194 1663256 ~ 1666211 (+)
LOC103046457 kmt5a,LOC108425183 coding upstream 47584 1657106 ~ 1661821 (+)
LOC103035435 LOC108425189,LOC108276927,LOC107706776,LOC107554527 coding upstream 176636 1517362 ~ 1532769 (+)
LOC111195000 LOC108425194,LOC107653585,LOC107704125,LOC108277218,LOC107709189,LOC107602252 coding upstream 620315 1064732 ~ 1089090 (+)
LOC103043725 bcl7a,LOC108410533,LOC107704131,LOC107706784,LOC107722340,LOC107554537 coding downstream 709 1713634 ~ 1718947 (+)
dusp26 dusp26,LOC107720817 coding downstream 34596 1747521 ~ 1753757 (+)
LOC103042387 LOC108410540 coding downstream 47552 1760477 ~ 1766925 (+)
LOC111194965 mrps24 coding downstream 246160 1959085 ~ 1961614 (+)
polm polm coding downstream 261320 1974245 ~ 1981134 (+)
G172576 NA non-coding upstream 11895 1694865 ~ 1697510 (+)
G172548 rilpl1,LOC108410543 non-coding upstream 31979 1674159 ~ 1677426 (+)
G172522 NA non-coding upstream 239503 1436426 ~ 1469902 (+)
G172521 NA non-coding upstream 283965 1423606 ~ 1425440 (+)
G172520 NA non-coding upstream 306289 1401798 ~ 1403116 (+)
G172600 NA non-coding downstream 60300 1773225 ~ 1776601 (+)
G172733 NA non-coding downstream 152176 1865101 ~ 1882035 (+)
G172735 NA non-coding downstream 161876 1874801 ~ 1875147 (+)
G172736 NA non-coding downstream 172283 1885208 ~ 1888464 (+)
G172737 NA non-coding downstream 175617 1888542 ~ 1889596 (+)
G172552 NA other upstream 80600 1626799 ~ 1628805 (+)
zswim6 zswim6,LOC108425190,LOC107704169,LOC103369940,LOC107706746,LOC105014808 other upstream 164449 1383495 ~ 1544956 (+)
G172517 NA other upstream 167254 1507320 ~ 1542151 (+)
LOC111194999 pitpnb,LOC108425199,LOC107602250,LOC107709228,LOC107706770,LOC107704163,LOC107653151 other upstream 843029 843788 ~ 866376 (+)
LOC103038248 NA other upstream 1123207 579323 ~ 586198 (+)
LOC103041266 NA other downstream 126426 1839351 ~ 1850216 (+)
G172725 ogdh,LOC107554543,LOC107714098,LOC107656768 other downstream 140357 1853282 ~ 1855754 (+)
G172770 h2afvb,h2afva,LOC107386217,LOC105007341,LOC107668744,LOC107599604,LOC103039302 other downstream 281783 1994708 ~ 1997362 (+)
LOC103031931 LOC103031931,LOC108435131,LOC104953549 other downstream 1005684 2718609 ~ 2726076 (+)
unc5c unc5c,LOC108435138,LOC108277026,LOC105911728,LOC106564027,LOC105025160,LOC106568183 other downstream 1752208 3465133 ~ 3739736 (+)

Expression


Co-expression Network