snrnp35 (snrnp35,LOC107658469)


Basic Information

Item Value
gene id snrnp35
gene name snrnp35,LOC107658469
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 1663256 ~ 1666211 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250283.3
tggttaatACACAGACACCAGATGACTGTGGAACCAATAACATCGCATACCTTTCCGCCCGGAACTGTTACAGTGTTGCACACtcatttctgtgtgttttgattgttTTCGGCTAAAACAGAAAGTTTTTCGCTATTTAACGCAAATTTTACAATCAGAAAATCCTCAGACCAGGCCGGAACAACGTGAGCCCTGCTGATAAAGAAAATGAACGAGTGGAGTCCCCTGGCGAAGGTCTACGACCCCCTTAAGGCTGGCAGTATTGACAGCACTGATGTGGAGCCCCACGACAGAGCGATATGGCGAGCAATGAATGCCCGGTACCGGCCCAACAAAGCCGTAACGGGGGACCCTCAGCTCACACTGTTCGTGGCACGACTGAACAAGCAGACGTCTGAAGAGGACCTGAATAACGTGTTCTCCACGTTTGGAGACATCCGCAGGGTACGACTCGTCCGGGATGCTGTCACTGGCTTCTCCAAGGGGTACGCCTTCATCGAGTACAAGGAGGAACGCTCCCTGATGAAGGCTTGGCGAGATGCTAATAAGATGGTGGTGGACCAGAGTGAACTGTTTGTGGACTTCGAGCTGGAGAGAACCCTGCAGGGCTGGATCCCCCGGCGCCTTGGTGGAGGCCTGGGTGGGAAGAAGGAGTCTGGACAGCTGAGGTTTGGAGGCAGAGACAGACCCTTCAGGAGACCCATTAACCTGGGTGGGCCGATGCCTCAGGGCAGGCCTGGAGAACGCAGGTGGGAAGGGGGCGGTGGTGGTGGAGGAAGCAGGGAGGAGAGGCCGAGGGACTGGGACagggaaagagacagagaccGGGATGCATCTCTAGGACGGGACAAGGACAGAGACTATGGGCGGAGACGGGAGCAGAGAGATGATTGGGAACGAGGGAGCGAACGAGGCTCTAGAGATTACCATAAAGACAAGAGGGACTCCAGACGATACAGGGACAGGAGTAACGAGAGAGAACCGAAAcgagaaaaagaggaaagaagATATCGTGACTCTTACAGAGACTCTGACAGAAGATGAATTATCTGGACTATTTCACAAATTTAGAACTTCTCATTTAAACTGGACACTTATGGTGGTAATAAAATTAGGACTGTTTGATAAAAATGTCCCTTACTTCAGGACATATTGGAAAGTTTTAAGTTTGCGCTCAATAGATCTAAGCTGCTCTGTGAAAAAGGGCCTTTAACTGTCCACAGTTTCTCATTTCTAGAGTAATTGATGCATCTTGGATTATAAGATAATTAGATGGGGACAATTTTCCTAAAGTTTTAATTAATCCATTGTAAAATGTTGTGATGTATTGAATCATAACCATGGGATTGTGATAAGGATTGTATCAAGTTACATTATGGTTTTGACCATCTTTCAAGTGAAATATTGTGTGATTACGTTTCCCGTGGAATGTAAAGAATGCTGCTCTGAACTGTGGGATATGTAGACAGGGTCTTGTGCACTTAATGTGGATTTGATTTCTGCTAAAGTTGCTTAATGCTAGTCACTGTTTCCCCAGTCCATTACACAGTTTCTGCATTAAACTGCTGCCTCACTTAAGGTGGAATTAAACACTCAGGAAATTTGCTAACATCTTGCATCTTGTTTGGCCAGTTAAGCAGGCTTTAGTAACATTcagtaaatgttttgtttttaacttgTAAGCGATGTGTCTGGCTCTGCAGCTTGATTATCATGATGTTTACGGAAGTGGTGAAAAAATGGTGTAGTTACACTCTAACTGTAATAGGAGCAAAATAATAATCACACTGCTGACAGTACGCtgtataaaatactttaatgagCAATGAGATGAAATTATGAAGCATTTTCCTGTGCACTGATAAATATCCAACAtggatttgttttgttttttttcctttagtaAATACCTGTAGCATGAATGTTCAGCTTTATCACATCCTGAAACCCTTTACAGCTACATTGGATGCATCAtgtttaaaacacagtaaataaaaaaacaagagttcCGAgctcacaaa

Function

symbol description
snrnp35 Predicted to enable mRNA binding activity and snRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of U12-type spliceosomal complex. Orthologous to human SNRNP35 (small nuclear ribonucleoprotein U11/U12 subunit 35).

NR:

description
U11/U12 small nuclear ribonucleoprotein 35 kDa protein

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K13155 SNRNP35; U11/U12 small nuclear ribonucleoprotein 35 kDa protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250283.3 True 2021 mRNA 0.45 2 1663256 1666211

Neighbor

gene id symbol gene type direction distance location
LOC103046457 kmt5a,LOC108425183 coding upstream 1435 1657106 ~ 1661821 (+)
LOC103035435 LOC108425189,LOC108276927,LOC107706776,LOC107554527 coding upstream 130487 1517362 ~ 1532769 (+)
LOC111195000 LOC108425194,LOC107653585,LOC107704125,LOC108277218,LOC107709189,LOC107602252 coding upstream 574166 1064732 ~ 1089090 (+)
LOC103021728 NA coding upstream 784365 869531 ~ 878891 (+)
LOC103037605 ttc28,LOC107602249,LOC107588927,LOC107704161 coding upstream 825336 588887 ~ 837920 (+)
denr denr,LOC107722339,LOC107706783 coding downstream 38293 1704504 ~ 1709183 (+)
LOC103044833 LOC108410534,LOC108276727 coding downstream 43194 1709405 ~ 1712925 (+)
LOC103043725 bcl7a,LOC108410533,LOC107704131,LOC107706784,LOC107722340,LOC107554537 coding downstream 47423 1713634 ~ 1718947 (+)
dusp26 dusp26,LOC107720817 coding downstream 81310 1747521 ~ 1753757 (+)
LOC103042387 LOC108410540 coding downstream 94266 1760477 ~ 1766925 (+)
G172522 NA non-coding upstream 193354 1436426 ~ 1469902 (+)
G172513 NA non-coding upstream 231373 1356795 ~ 1431883 (+)
G172548 rilpl1,LOC108410543 non-coding downstream 7948 1674159 ~ 1677426 (+)
G172576 NA non-coding downstream 28654 1694865 ~ 1697510 (+)
G172583 NA non-coding downstream 41512 1707723 ~ 1769014 (+)
G172600 NA non-coding downstream 107014 1773225 ~ 1776601 (+)
G172733 NA non-coding downstream 198890 1865101 ~ 1882035 (+)
G172552 NA other upstream 34451 1626799 ~ 1628805 (+)
zswim6 zswim6,LOC108425190,LOC107704169,LOC103369940,LOC107706746,LOC105014808 other upstream 118300 1383495 ~ 1544956 (+)
G172517 NA other upstream 121105 1507320 ~ 1542151 (+)
LOC111194999 pitpnb,LOC108425199,LOC107602250,LOC107709228,LOC107706770,LOC107704163,LOC107653151 other upstream 796880 843788 ~ 866376 (+)
LOC103038248 NA other upstream 1077058 579323 ~ 586198 (+)
LOC103041266 NA other downstream 173140 1839351 ~ 1850216 (+)
G172725 ogdh,LOC107554543,LOC107714098,LOC107656768 other downstream 187071 1853282 ~ 1855754 (+)
G172770 h2afvb,h2afva,LOC107386217,LOC105007341,LOC107668744,LOC107599604,LOC103039302 other downstream 328497 1994708 ~ 1997362 (+)
LOC103031931 LOC103031931,LOC108435131,LOC104953549 other downstream 1052398 2718609 ~ 2726076 (+)
unc5c unc5c,LOC108435138,LOC108277026,LOC105911728,LOC106564027,LOC105025160,LOC106568183 other downstream 1798922 3465133 ~ 3739736 (+)

Expression


Co-expression Network