LOC103046457 (kmt5a,LOC108425183)


Basic Information

Item Value
gene id LOC103046457
gene name kmt5a,LOC108425183
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 1657106 ~ 1661821 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250287.3
TTTTAAACGCTCACATGGTTTCCTCCCTTGAATGAGTTAAAAGTGGAAACATGGCGGCGTGAAACTGTAAAAACTAGCTGGGGCGAggtacagtaaataaaacagcGGTAAAGTTAGTTTTTCAGCGAGTGTTCGCCGCTCTGTGTGCAGCCGCGGGGGGATGTGTTCAGTCTGCGGCGGCTGGAGAGCAGAAAGTGCGGGGATTTAATCGGTTCTGCTGGCCTGCTGAAGCCAAAGCCGCAACACCGCCGAAAACAATACGGATACAGAGCACTGAGATGAACGGGGACGTATTATGTAATGGACACTCTACACTTCGCAGTTTCTTGAGTCACAGCGCCTCCAGGGCAGCGCATCATGAGGAGATCTCTGTCAAAATCATCCAGGACGGGAAATCCTCGCGGATATTCTGCACGCAGGCTGAGGCACAGAGGAACTCGAAGAGACCCAGTACTGTAAATGGAGAAATCAATCTACCTAAAATGGCTGTGAATGAAGATCTCCAGCATCCAGCTCAGAGAGCAGAGGAACAGCCGAGGCCGCTGCACTGCGTACAGTCTTATCTACCCTCACCAACACAAATCACTCCAGAGGTCAACAGTGCTCGCCCGCGCTGCCAGCGGGGAGCAGTCTGCCGCAAAGTGAAAGTGAAGAGACCTTCACAGAGAGTGGCAGAGAACAGGAATTCCCAGAATCGAAAGGTCACAGATTACTATCCCATAAGAAGAAGCTCACGGAAAAGCAAAACTGAATTAAAGTGTGCAGAGAAGCAACACATAGACGAGCTGATCACTAAAGGGATAGAGAATGGAATGATGGTCAAATATATTGAGGGAAAGGGAAGAGGAGTGTTTGCCACCGAGAACTTCCAGAAAGGACAGTATGTGGTGGAATATCATGGAGATCTGTTGCTGAAAACCGACGCCAAGAAAAGGGAAGCTGTGTACGCACAAGATCCGACAACTGGCTGCTACATGTATTACTTCCAGTATCTCAGCAAAACATACTGTGTTGACGCCACAAAGGAAACGGATCGTATGGGACGGCTCATCAACCACAGCAAAAACGGCAACTGTCAGACCAAGCTCCACGACATCAATGGAATACCTCACCTGATCCTCGTGGCCTCCAGAGATATCGAGGAGGGCGAGGAGCTGCTGTACGACTACGGCGACCGAAGTAAAGCCTCGATAGCGGCTCACCCGTGGCTCAAACACTGATTCCGAGAAGGGAAGCTAACCAACACCCTGTTTCTTAAACgcagtttttaatgtaattttttgccTTAGCAAACGGAGAATGTTTAGGGGGTAGTACGTGTTCGGGTGTGTTAAACAGTGACTTAAGCGCAGTTAGGTTACGGTACATATTCTACATGTCCTACATGATacttttaaagatatttatCCCGCTATATGACATGCTAGTTTTGACACGtttcttttttgtatattttatatacttgtAGACCAGTGCTTCCAAAGCATGCAGTTATAGtccaactttctgcatttttttatatataaagaaaagttTTCTTAAGCCGGTGTATAGTAGTTAGTGGCTTAGCAATAATTATTTATGatgcccaaaaaaaacaaacaaacagcatttCTGTGGAATGCAAGTGAAGCTTAGAAGAGCCATGTTTTAAAAGCTTGGGATAACTGGAAGGTACCCCCGTCCCTCGGCCTGATTTGGTATCCTCTTGTTTTATAGTGTTGAGTGTCATTTCATGGATTTGAACAGACCTTTACCTCTTTCTACCTTGTTGAGTGTCCAGTACCAAATGACCTGAGATCAAAGGTATTCAGTTGATTCTGTATGCTGGGTTAGAGgcattgtttaataaaatggtTTTATGCAGAG

Function

symbol description
kmt5a Enables histone-lysine N-methyltransferase activity; p53 binding activity; and transcription corepressor activity. Involved in negative regulation of transcription by RNA polymerase II; peptidyl-lysine monomethylation; and regulation of DNA damage response, signal transduction by p53 class mediator. Located in cytosol and nucleoplasm.

NR:

description
N-lysine methyltransferase KMT5A-A

GO:

id name namespace
GO:0034968 histone lysine methylation biological_process
GO:0010628 positive regulation of gene expression biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0007049 cell cycle biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0051301 cell division biological_process
GO:0018022 peptidyl-lysine methylation biological_process
GO:0043229 intracellular organelle cellular_component
GO:0018024 histone-lysine N-methyltransferase activity molecular_function

KEGG:

id description
K11428 SETD8; [histone H4]-lysine20 N-methyltransferase SETD8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250287.3 True 1869 mRNA 0.46 7 1657106 1661821

Neighbor

gene id symbol gene type direction distance location
LOC103035435 LOC108425189,LOC108276927,LOC107706776,LOC107554527 coding upstream 124337 1517362 ~ 1532769 (+)
LOC111195000 LOC108425194,LOC107653585,LOC107704125,LOC108277218,LOC107709189,LOC107602252 coding upstream 568016 1064732 ~ 1089090 (+)
LOC103021728 NA coding upstream 778215 869531 ~ 878891 (+)
LOC103037605 ttc28,LOC107602249,LOC107588927,LOC107704161 coding upstream 819186 588887 ~ 837920 (+)
LOC103038565 LOC108425201 coding upstream 1081773 543780 ~ 575333 (+)
snrnp35 snrnp35,LOC107658469 coding downstream 1435 1663256 ~ 1666211 (+)
denr denr,LOC107722339,LOC107706783 coding downstream 42683 1704504 ~ 1709183 (+)
LOC103044833 LOC108410534,LOC108276727 coding downstream 47584 1709405 ~ 1712925 (+)
LOC103043725 bcl7a,LOC108410533,LOC107704131,LOC107706784,LOC107722340,LOC107554537 coding downstream 51813 1713634 ~ 1718947 (+)
dusp26 dusp26,LOC107720817 coding downstream 85700 1747521 ~ 1753757 (+)
G172522 NA non-coding upstream 187204 1436426 ~ 1469902 (+)
G172513 NA non-coding upstream 225223 1356795 ~ 1431883 (+)
G172548 rilpl1,LOC108410543 non-coding downstream 12338 1674159 ~ 1677426 (+)
G172576 NA non-coding downstream 33044 1694865 ~ 1697510 (+)
G172583 NA non-coding downstream 45902 1707723 ~ 1769014 (+)
G172600 NA non-coding downstream 111404 1773225 ~ 1776601 (+)
G172733 NA non-coding downstream 203280 1865101 ~ 1882035 (+)
G172552 NA other upstream 28301 1626799 ~ 1628805 (+)
zswim6 zswim6,LOC108425190,LOC107704169,LOC103369940,LOC107706746,LOC105014808 other upstream 112150 1383495 ~ 1544956 (+)
G172517 NA other upstream 114955 1507320 ~ 1542151 (+)
LOC111194999 pitpnb,LOC108425199,LOC107602250,LOC107709228,LOC107706770,LOC107704163,LOC107653151 other upstream 790730 843788 ~ 866376 (+)
LOC103038248 NA other upstream 1070908 579323 ~ 586198 (+)
LOC103041266 NA other downstream 177530 1839351 ~ 1850216 (+)
G172725 ogdh,LOC107554543,LOC107714098,LOC107656768 other downstream 191461 1853282 ~ 1855754 (+)
G172770 h2afvb,h2afva,LOC107386217,LOC105007341,LOC107668744,LOC107599604,LOC103039302 other downstream 332887 1994708 ~ 1997362 (+)
LOC103031931 LOC103031931,LOC108435131,LOC104953549 other downstream 1056788 2718609 ~ 2726076 (+)
unc5c unc5c,LOC108435138,LOC108277026,LOC105911728,LOC106564027,LOC105025160,LOC106568183 other downstream 1803312 3465133 ~ 3739736 (+)

Expression


Co-expression Network