LOC103021728


Basic Information

Item Value
gene id LOC103021728
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 869531 ~ 878891 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250294.3
TCtataataaacagagtgtaatgtttgtttatttatataggttgagatttaatttaaagctaCTTTCTGCTCCTCGCTCCCGCCCCCTTTCAGGAGGCGTGGCTTTGAGCCAGGCCCCGCCCCCCGCTCCGTGCCCGTATGTGTGAGGGAATGAGAGAATGTCAAACTTGTTGCCGCGCGGCGCCGCGAGCAGACCGAGCGGAGGAGCGGCTCCCGGTTCACCGACTGACCTCCCGCGGATGGACAGAGCAGCAGCGCGCGGGCAGCTGGGAGGAGAGAAGCCCGCGTGCGCGGAGGTTCTGCCGGTTCTGGAGGTTCTACAGGGTTCTGTGGATCGGTATACAGCCGGCGGACCCGCGCTCTGCCCCGGTACACGGTGAGAGAGGCTCGCGCGGGCGCGCGGCTGCTGTTGCAGTTGCTGTGGAGTAACCGGGTGGTTCACCGGGTGTTGTTCCAGTTGGGTTCTTCAGAATGGCGCGTGTTCTCGGATCTGGAACGTTTTGCATGTCTGGatgaattttttatttgatttttcatCGTAAAGAATATGCAGCGAATTTTCCAGGATCATCTTttgatttgtattatttttactatctATTTTTCATCTTCAAAGGAACTGAAGGTTTTTTCCACAATACTTGGAAATTACAGCAGATGCCCTCTTGCTGGGTATCGGGAGGTACTGCCCCTAAATTTAATGTCCTAAgattttataatacagtatagatactttaataaatacataaataacaatGCAGAATTGTAGTAAATCAAAATCAGTCATTTATTAACCATTATTAtgactgattgactgactgattggTGATAAATAGTGGAACGCAAAACCCTTTTTCAAagcataaaacttttttttatataaatataaaagcataaaagCAAGTGATTGCATGCTAGtcataatcatatttattttttaatgtatttatttgactCTTTTAAGTCTTATAACAGAATGATCTGACTTGATCCAAGacaaagttttagtttttttagttacaaaaattttatttatagagcCCTTTTTTAAaacctcttttaaaaaaattaagcaatgTAATACCTGATAGtaacaaatgaataaacagaTACAAAGATATTTGGCTAGCCCTATCATTATTTTTACAAACTCAGCAAATCAACGAATTAagagatttatttctaattttttggaATTACTGGAACATGAATGTAAACAAGCAGCCCTTTTTTGAAACTTGAAGCAGTTTAAAGCAACTTATTACTTGGTAACAATAAGCATTTATCACATTTAATAGACCACTAGTTTTGCTTGTTATTAATTTACTCATAGCACGATGGACTTAAATCCTGGTTGGAcagagctttttattttttttatttttatcatcaaAATTTAACATCATAAGGCATAAATAAgcctcttttttatttgaaactCAAATAAGCCACTCATCAACAGCATGGCCTGTTTCCTGGTTGAAAAGACACATTTTTTGGACTTAAAGACGATGGAATTGTCCGTCGTCACGTTGGATTGTTTACTCTGACTGTGACTATTTTTTCTTGATTGTGGGATTAGCGAACCCTTCTTGCACAACCAGCCTTGTGCGGAGCAGCAATGAACGCTAACTATAACCCCTCTGGATTTCACATGAAAGCGCCGTCGCTAGCTGTGGAGCCAGCCCTGGGCCCCTTAAGCGACCCCCCCATGCAGAGTCTCAACTTCATGCCGGGGAGGGAGCAGTATGGATTCCAGCCTCACAGCCACGGGGATATGCTCCCCGCAggactccagcagcagcagcaacatcaGCTCCATATGCCGCCGCCGCCTCCTTTCAACAGCCAACAGCTTAATCCCGAGCAGCCTTCACACCCCTACCAGGATTCAGGGCCAGGGGTCACCTCCTGCTTGCACGGGGAGCGACACGTTGGCTTCAGTGGCAACAACAGCAACAGCGCTGGTCACCAACACcctcatcatcagcagcagcagcaccacatgTTCGAGACGGAATTCAGTCAGATTACCGAAGCCCAGACACGAGAATGCCTTTcccatcaacaacaacaacaacaacaagcacagcagcaccaccaccatcaccatcaacgGCTGGCCAGCATGCCCGAGTATATGCACGGGCATCTCCACGGACACCCAAGCAGTAACCATGCTGTGCCTGCTCCCTGTTTGCCTCTGGACCAGTCGCCCAACCGGGCAGCGTCCTTCCACGGCCTCCCGTCCTCCTCCCCAGAAAGCAACAGACTTGAACATTATAGACAACTATTCCCACAGGGAAGGGTCGGTGGGTCGCAGTACACTTTCCCATGTGATCCTGTTCCTGGCCATTTTGATATGCCAGGGTTCTCCACCCCTGACTCCAGCGATCCCAAATTCTCCTACTGTGAGACAGGGGGGCAGATGACTAACAACAATTTCCCCACCTTCAATCATGGCGGCGGCGTCTCCCGAGCGATGATCGGCAGCTCTAAAGTCGATCAGCAACTACCTCAGCAGAACTTGTATTCGGAAAGATTCGGGAACAGGGCAAAATTAGTACCAGCAGAGAATCTCTCTGCTAGACACCATCTCCTAACCCAGCAGAGAGGAAGCTTGTCTAGACAGAACCCCGGCTCCCCCGTCCTTCCTCGACTGTACCACACCCCAGACTTTGTTCCAAACAGTCCAGACATGCAGAATGGCGGTGCCTTGgtccacactgctcaacacggTCAGATAGATAATCCCATCCACAGGTTAAATAATCACAACATGCATCCGCATCCTTTTGGGGAACCTGTGTTCAGCGTTCCCCAGCTTGGACCTCAAGCACCCCACCAGCAGCACCTCAGCTCCTTCCCTTATTTAAATATGGCCAAGAGGCCACGGTTTGATCTCCCAAATGGCTCTGCTGGGGAGATCTGCAGCCCCCTGAGAGGTGGCTTACATAATCGACCAGGCCTTGAGAACCACCTCTCCCCCTCTGGCTTCCCTGCTCCCCTGGGGGACTTCACAGCTCAGATGATGGATGGGTTTCCATCAGGACCCCTGCCGCTGAGCTGCGGCCCGCACCAACAGCAGCCGCTGCCTCGCCGCCAAAATGCAGCCATGATGATCAAACAAATGGCTTCTAGGAATCAGCAGCAGAGGATCATGAGGCAAGCTGacctgcagcagctgcagccaTTAGGTCATCATGGGACTGTTACGCCCAGTGGCCCGATGGTTCACAGAGGGGCGTTGGGTAGTATGTCGCAAATGACAAACTTGACTGACAAAAATCATTTTCATAACAACTTTGAGCAGCAGAGTCCTCACCTACCTCACGAAAACTCTTGCTCTTGGTTTCCTGACTCACATCAGCAGTGCAGAGACACTAACCTTCACGCAATGGAGCAAACACAAAACGGACACAATCTCATGTTTAGACCGGGGGTCACCGCAAGTGACATGCAGCCTTTAAATTCACCCAGGCAGCACAGTCAGTTTGAGAACAGCAACCCTCTTAACAGCCCTCTGCAGGTACAGCCACCAGGTCACGGAACGATGCCGCCAAATGCGTCAgcgaatttaaaaaatgaatttggAGGCCCTACTGTAAGACAGCAGCACAGCTTCCCTCCTGGGAGGCCGAATCAGCAAGGAACCCCCCAAAGCAATCCTTCCGCCTTTAACCCCTCACCAGGAAACTATCAGTCCCATCCCGAGTACATCTCCAACCAGCAGCTGTCAGTCAATAAGCTTGGGGCCCTCTCTTTGGGGAATTTGAACAAAGCCAGCGCTAAAGACGGCATGTTTGGCCAAAGCTGTCTGGCAGCTCTCTCCACTGCCTGCCAGAATATGATTGCCAGTTTAGGGGCCCCAAACCTCAATGTGACTTTTAATAAGAAGAGCCAAAATGAGGCCAAACGCAAATCAGGTCAGGTGGAGCAGGACGCAAATAGCAACGGAGGTGGCGGGGCTTGCGGCCCGGGGGCAGAGTATTTCCAGAGCAATGCTTCTCAGAATAGTCAGACACCTTGCTCTGGGAATAACAACAATGTCACAGCAGGTCAGAGTGCTCCGGGACAGATGGCAAAAAGGGAAACTCTTTCCCCAAACAataacagcagcaacaacaacaacatcagCATTGGGGATTCTGGGAACGAGGGGAAGTGCAATGGCCGAATGAGGGGGAAGAGGCGACGTGACAGTGGGCACATAAGTCCAGGAAATTTCTCCCCCTCTTGCGGCAATAGCAACCCTGTGGTTAGTCCAGGTCAGCAGGCGTCTTCTTTAGGGATGGGAATTGAGAGTCGAGGCAGGACACCTGAAGGTTGTCTTGTCTCTCCATCCTTTGTAAAGGCTGATCTCGCCACTTCTATGGATAGCGGCATCCAAAGCGTGGGAAAGTCTGATGGAGTTTCGCCCTGCATGGATTATCTCGACGATGCCAGTCCTAACTACAGCAACGAGGACACTAGAACAAACAGAACTGGCATGAAATGTAATTCAGACAACATTCGCACCGGCTATCCCGACACACCCTGCATGGAGCAGGTAAGGACGCCACTCGGAAGCTCCGGCCAAGACGAGGTGCATCCTCTGGAGATCCTCCAGGCTCAGATCCAGCTGCAGAGGCAGCAGTTCAGCCTCTCTGAGGACCAGCCTCTCGGAGGGAAGGCTGGCAACAAGCCGGACTGCCAATCTGGACTCAACGATGACTGCGCTCTGGCAGGCTGCAGCCCGGAGTCAGGAAAGGGTTCTGTGAATACCATTGACCTTGACTCGCTCATGTCAGAGCAACACGCCACCTGGTACGGCCCCGGCAGCAAGGCGGCCCTGATGGACGACCCCGGCAACGGCAAGTGCGTGGGATTCTGGGACCGAGCGAGAGGCCAGAGTGACAACAAAGAAGGACTTGGGTAGAACCACTGTCTCGCTGTCCCTTATTGGCTCCTTGCCGAATTGCTGAagaggtgctgctccagctcagcatgGGGGTAGAGGAGGACCTGAAGGAGACCACCCGCCGTGTCTACCTCCTCACCTCACCACTGCCCGGGGGATGGGGGACGGGGGGGGTGGAGGAGCCCCCCTGAGCTCCACTCCTGTCCCGGGGAAGCTCACACTCAGAGACGAGCTCAAGCCCAGCTCAGAGCTTTCGGACGGGGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250294.3 True 5165 mRNA 0.50 3 869531 878891

Neighbor

gene id symbol gene type direction distance location
LOC103037605 ttc28,LOC107602249,LOC107588927,LOC107704161 coding upstream 31611 588887 ~ 837920 (+)
LOC103038565 LOC108425201 coding upstream 294198 543780 ~ 575333 (+)
LOC103038879 NA coding upstream 327761 536293 ~ 541770 (+)
ptpn11 ptpn11,ptpn11a coding upstream 337706 514237 ~ 531825 (+)
brap brap,LOC107706763,LOC107712082 coding upstream 398110 460448 ~ 471421 (+)
LOC111195000 LOC108425194,LOC107653585,LOC107704125,LOC108277218,LOC107709189,LOC107602252 coding downstream 185841 1064732 ~ 1089090 (+)
LOC103035435 LOC108425189,LOC108276927,LOC107706776,LOC107554527 coding downstream 638471 1517362 ~ 1532769 (+)
LOC103046457 kmt5a,LOC108425183 coding downstream 778215 1657106 ~ 1661821 (+)
snrnp35 snrnp35,LOC107658469 coding downstream 784365 1663256 ~ 1666211 (+)
denr denr,LOC107722339,LOC107706783 coding downstream 825613 1704504 ~ 1709183 (+)
G172276 NA non-coding upstream 11244 853950 ~ 858287 (+)
G172266 NA non-coding upstream 46771 764626 ~ 822760 (+)
G172218 NA non-coding upstream 275622 539700 ~ 593909 (+)
G172215 ddx55 non-coding upstream 363439 504665 ~ 506092 (+)
G172198 NA non-coding upstream 380951 472033 ~ 488580 (+)
G172462 NA non-coding downstream 111743 990634 ~ 990838 (+)
G172464 NA non-coding downstream 121217 1000108 ~ 1000519 (+)
G172480 NA non-coding downstream 165253 1044144 ~ 1104975 (+)
G172469 NA non-coding downstream 212461 1091352 ~ 1094665 (+)
G172503 NA non-coding downstream 447462 1326353 ~ 1326577 (+)
LOC111194999 pitpnb,LOC108425199,LOC107602250,LOC107709228,LOC107706770,LOC107704163,LOC107653151 other upstream 3155 843788 ~ 866376 (+)
LOC103038248 NA other upstream 283333 579323 ~ 586198 (+)
LOC103039814 vdac2,LOC107704122 other upstream 386595 435773 ~ 482936 (+)
LOC103025596 purb,LOC108425219,LOC103372361,LOC107099159 other upstream 637196 195126 ~ 232335 (+)
LOC103042277 cnnm3 other upstream 703077 70622 ~ 166454 (+)
zswim6 zswim6,LOC108425190,LOC107704169,LOC103369940,LOC107706746,LOC105014808 other downstream 504604 1383495 ~ 1544956 (+)
G172517 NA other downstream 628429 1507320 ~ 1542151 (+)
G172552 NA other downstream 747908 1626799 ~ 1628805 (+)
LOC103041266 NA other downstream 960460 1839351 ~ 1850216 (+)
G172725 ogdh,LOC107554543,LOC107714098,LOC107656768 other downstream 974391 1853282 ~ 1855754 (+)

Expression


Co-expression Network