LOC103025911


Basic Information

Item Value
gene id LOC103025911
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 189817 ~ 192815 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250308.3
TGACCTGATTGGTTATTGGTCGCTTTGTGAAGATGTTTAGGGAACACTGGCAGGACTGTCTGGTTCTTTTCTCAGTGTATTGGTTATTTATTGTGTAATATTGAGTAATTGATTATTTAATTGGTTATTTATCGGGTAATATTGAGAGATAATGGGAAGGATCTGCGCGTACCGCGGCTGCAGGAGCTCCACCGGGCTGCACAGGCTCCCCGCGGACCCGGCGCTGCTCTCTCAGTGGCTGATCCGGATCGGACTGAATCCGGACACTAAAACCTCCGGCCTGCTGGTCTGTAACCAGCACTTCTCCCAGCACAGCTTCTCCAACTACATGGAGGTAAAGATGGGCTACCTGCCTGAGAGATACCTGAAGCTGAAACCTGACGCTGTGCCCAATCCTGCAGAACACCTGGCCTGCTGGTTTAAGccAAAAGACTGTAAAGACCAGGCGTGTCAGACAGACCCAGCCGACCTGCAGGACGTCTGTGATCAGGGAGATGTTAAACCACACAGAACTTATGACACCAGTTTACTTGATGCCAGTTCAGTCCAGGCAGCTTCAGAGACGCCTTTAGACGCATCCATCCCCCTAAAGAGACCCAAACCTGAGCCTGAGGAGCTCAGCATCCTCCCTGACCTGACTGACTCCGCCTTCCACCCTGATCATGTGACCAATGGCACCGCGAGTTGTGAAAGGAATGTAccagaagccccgccccctcagaAGAGGAGGAACTTAGTTATTTATGAGGAAAACCTCAATCAGCTGTTCAGGAAATGCCCAGTTTGCTCTAAAAGCTGTGAGATCAGCTCGAGCGCGGCGGGGTCGCTCCTGCACGTGACGCAGGGATgcccacactgctgctgcttatTCGAGTGGAACAGTCAACCCAAATATATCCAGAACCTTCCGGCACAGAACCTCCACCCTGAAGCTGAGGGTGAAGCTGAGGGTGAAGCTGAGGGTGAAGCTGAGGGTGGAGGAGGTGTGGTTCAGTCTgaacccagcagcagcagcagcagcagcagtgataCGGTTAATATGGTGGTTTATGTTTCTGTGCCGTCCAGTCACCTCCTCCTGCTGCCCCCCCTGAAGAACCCAGCTCTGTGATGAATGTGTGAATGAATTtttatatatgattaaaatatactgtataatatatatatatacattattattgttttttattgttcattgatttagatatttttattaatctataCTGATCCTGAAGGTATAATGGACTCTGTGTCTGCCATAAGGATGTGCTTAAAATCATGTACACAGGATtagtatggtcatgaaaaaattataatgaaaatagcaattttcaggcctggataagttctggaaaaataaaaatacccagaaagatTGGGTAATTTGCTCTACAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250308.3 True 1396 mRNA 0.47 4 189817 192815

Neighbor

gene id symbol gene type direction distance location
LOC103026214 NA coding upstream 2677 183143 ~ 187140 (+)
LOC111194997 NA coding upstream 13223 173005 ~ 176594 (+)
LOC103027926 cnnm4,LOC108277002 coding upstream 43622 129033 ~ 146195 (+)
LOC103027009 LOC108425225 coding upstream 61824 121443 ~ 127993 (+)
LOC103026711 NA coding upstream 74180 109695 ~ 115637 (+)
LOC111194996 LOC108425217 coding downstream 11356 204171 ~ 216693 (+)
LOC103041052 zfyve16,LOC107751709,LOC107665785,LOC107602218 coding downstream 51293 244108 ~ 274270 (+)
LOC103024445 LOC108425213,LOC107665780,LOC107602239,LOC107548990,LOC107731619,LOC107751766,LOC107704148 coding downstream 139207 332022 ~ 339082 (+)
hic2 hic2,LOC107665789,LOC107704150,LOC107548988,LOC107602240 coding downstream 159785 352600 ~ 371990 (+)
brap brap,LOC107706763,LOC107712082 coding downstream 267633 460448 ~ 471421 (+)
G172126 NA non-coding upstream 36332 132453 ~ 153485 (+)
G172130 NA non-coding upstream 104969 84384 ~ 84848 (+)
G172118 tacr1b,LOC108425229,LOC107689601,LOC107741654,LOC107589026,LOC107579787 non-coding upstream 130584 57149 ~ 59233 (+)
G172099 NA non-coding upstream 171828 16902 ~ 17989 (+)
G172151 NA non-coding downstream 62491 255306 ~ 256401 (+)
G172161 NA non-coding downstream 105726 298541 ~ 450016 (+)
G172166 NA non-coding downstream 126480 319295 ~ 330527 (+)
G172168 ube2l3,ube2l3b,ube2l3a,ub2l3,LOC106562742,LOC105014760,LOC107599129 non-coding downstream 149570 342385 ~ 349221 (+)
G172169 NA non-coding downstream 163228 356043 ~ 417595 (+)
LOC103042277 cnnm3 other upstream 23363 70622 ~ 166454 (+)
G172120 LOC107706809,LOC108425229,LOC107577657,LOC107658568,LOC107721554,LOC107587419 other upstream 125248 63363 ~ 64569 (+)
LOC103028238 rps27a,ubb,scarb1,LOC107588960,LOC107658631,LOC107758624,LOC107567744 other upstream 139226 29536 ~ 50591 (+)
LOC103025596 purb,LOC108425219,LOC103372361,LOC107099159 other downstream 2311 195126 ~ 232335 (+)
LOC103039814 vdac2,LOC107704122 other downstream 242958 435773 ~ 482936 (+)
LOC103038248 NA other downstream 386508 579323 ~ 586198 (+)
LOC111194999 pitpnb,LOC108425199,LOC107602250,LOC107709228,LOC107706770,LOC107704163,LOC107653151 other downstream 650973 843788 ~ 866376 (+)
zswim6 zswim6,LOC108425190,LOC107704169,LOC103369940,LOC107706746,LOC105014808 other downstream 1190680 1383495 ~ 1544956 (+)

Expression


Co-expression Network