pdxp (pdxp)


Basic Information

Item Value
gene id pdxp
gene name pdxp
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 2110988 ~ 2115322 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250331.3
GGTATAAAATGCAGTGCTCATTTATCAGTGTTTTGCTGTTAGTGACACTCGGACTGCAAAACCTCAGTAATCGATAACAGTTAGGGGCCACTCAGCCGCTCTGTGATTGGCCACGGGGGTCACGTCCTCTCCACCAATAGGCTGCAGGGAATCCGGCGGACGGGTGGCGGTGCTGTGTGCGGATCGGGACGCGGCTCGGTTCGGCTCCGGTTCAGTGCTCTGATTCTGGTTCTGAATTAATTAACCGGACCGGTTTTTCCCCTCCACATCCACGTAACCGCCATCATAGGCCCGCGCGCGAGCTCGCTGCCTCTCGCGTCGATCAGGATGGCCGGTGGCGGCGGAGGTGGCGGTGGCGGCTGCCGCAGAGTGCGGGGCCCTGAGCTCCGGGAGCTGCTCGCCTCTAAGCGCGACGTGCTGTTCGACTGTGACGGGGTGATCTGGAACGGCGAGGCGGCGGTGGCGGGCGCCCCGGAGGCGGTGCGGCTGCTGAAGCAGCGCGGGAAGCGCGTGTTCTTCGTCACCAACAACTGCACGCGGCCGCGGTGCAACTACGCTCACAAGTTCTCGCGGCTCGGGTTCTCCGGCGTGGCGGAGGAGGAGATCTTCAGCTCGGCGTACTGCTCCGCGGCCTACCTGCGCGACGTGGCGCAGCTCCGCGGCAAAGTGTTCGCTATCGGCGGCCACGGCGTGCTGCAGGAGCTGCGGGACGCGGGCCTGGACGTGGTGTCGGAGGACGAGGCGGACGGGCCCGACTTCAGCATCTACGACTTCCCGCTGGACCCGGAGGTTCGGGCCGTGCTGGTCGGGTTCGATGAGAAATTTAACTTCATAAAGTTGGCGAAGGCCTGCTGCTACCTGCGGGACTCCGAGGTCCTGTTCCTGGCCACGGACCCGGACCCGTGGCACCCTCTCCGGGGAGGCAGGATCACACCGGGTTCCGGGAGTCTCACGGCGGCTCTGGAGACGGCCAGCAGCAGGAAGGCAATGGTCATCGGCAAGCCCAGCCGCTTCATGTTCGAGTGCATCGCCAGCCAGTTCGACCTGGACCCGGCGCAGTCCCTGATGGTGGGCGACCGCCTGGAGACGGACATTCTCTTCGGTGCCAACTGCGGCCTTTCCACGGTGCTGACCCTGACGGGCGTGTCCACCCTGGAGCAGGCGCAGGAGTATAAAGACAGCGAGTCGCCGGAGAAGAAGGACTTTGTGCCGGATTACGTGGTGGATAGCATCGGCGATTTCTTGGAGGCTTTGGAGGAGGAACAACCACAgcaggaggagggggaggagtaGGAAGAGTAGTACAGGAACAGTCCGAGAAAAGTCTGAGGTGTTCTGGTCATACTGTAACGAACCCCCGTCCACCTTAAGAGGGCACGAGAGACTTCAGCCTggcacataaacaaacaaacagacagacagagagagacagtcattATCGTTATGTCCAGTCCTAATCCCAATACTGTTGCTCGTGGTGTACAGTTCTAGCTGTGTGTCAGCATAGTtcagttattaatattaacctaTGAATTTGCAGTCCATTATCTTCATCAATGCATCGGATGTACGGTGCATTGATGTACCATGTGATTTGGTACTGTGAACTACAAGGCCTTGGATGTTTACCGCTCCAGTTAAAGGAATAGTTTGGTGTTAAATCTAATAAGCACGGTTTATCAATAACTCCAGATGCAATCAATCCAAGCCAAGACGTGTATtatgatatgatattttaaAGATGGCTTCTTTAGGTCACAACAAGAGAAGATTACATTAGGTTAACATTGGTGATGGTCTTAAATCTGATCTTTTGAAGCAATCTCTTCTTATCTCACATCTAGAGCTAAATTATGCTGTAAATGTGGTGGTTAAAATCATCTTTTTTGATCATATTagctaaatttaaatattagcttaaatatctttattaggggtgtgccccATAATATTGTATGCAACAATATTGccaaataatatgtaatattaatttTCTTGCAGTAGTTTTTCTTGaatataatttgtattttttttcaatgttagAATATCCTAaaatatcatattattttaaggccatataaCCCACCCCAAAACAGAActattaaacatgtattttacaGAAATAAGATTGGTCCAGTGTTTATTGGCAATATTACATCCTTTAATCTTGACTTCCTCttgttgtagtaaaaaaaaaaaaaagcaaatatcaGCTATTAAACACGCGTTGACTTTATGACTGCATCTGGTGATTAGATGATAAATCATTCTgatgtttttctatttctttaaaCTAAACAGAGTGAAGATTATTAATTATCCAGgctgtaattttattataaagctTGGCAAACCTGCTCTCCTGTTATtgatgaagctttttttttgggtgattGAAATGGCATGTATAGATTGAAATGTTATAAAGTGAATTATCAGGAACGTAGTGCTTGGGAAAGTGTAGACGCTCTTTTGAACTGATTTAATTTAGCTGTATAATAAAACTACTGAAATGTAA

Function

symbol description
pdxp Predicted to enable glycerol-3-phosphatase activity. Predicted to be active in cytoplasm. Orthologous to human PDXP (pyridoxal phosphatase).

NR:

description
pyridoxal phosphate phosphatase-like

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0016791 phosphatase activity molecular_function

KEGG:

id description
K07758 PDXP; pyridoxal phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250331.3 True 2518 mRNA 0.49 2 2110988 2115322

Neighbor

gene id symbol gene type direction distance location
mier3 mier3,mier3a,LOC108441071,LOC108277354,LOC107568605,LOC107665797 coding upstream 7044 2094562 ~ 2103944 (+)
ash2l ash2l,LOC107704134 coding upstream 37685 2056365 ~ 2073303 (+)
ddx56 ddx56 coding upstream 92249 2009660 ~ 2018739 (+)
LOC103032544 NA coding upstream 117656 1990765 ~ 1993332 (+)
polm polm coding upstream 129854 1974245 ~ 1981134 (+)
LOC103035434 LOC103035434,LOC108441064,LOC108277206,LOC557306,LOC107687378,LOC107568610,LOC107665788 coding downstream 100696 2216018 ~ 2232907 (+)
epb41l4a epb41l4a,LOC107653778,LOC107709672,LOC107692020 coding downstream 718919 2834241 ~ 2897371 (+)
LOC103033517 srsf9,LOC107560829 coding downstream 815733 2931055 ~ 2936876 (+)
LOC103030660 LOC108435150,LOC108277167 coding downstream 858435 2973757 ~ 2997663 (+)
LOC111195006 LOC108435149,LOC108277169,LOC107679516,LOC107730971,LOC107672600 coding downstream 885911 3001233 ~ 3007009 (+)
G172788 NA non-coding upstream 4654 2061098 ~ 2106334 (+)
G172782 NA non-coding upstream 67049 2042725 ~ 2043939 (+)
G172767 NA non-coding upstream 88168 1987991 ~ 2022820 (+)
G172763 NA non-coding upstream 106563 1999389 ~ 2004425 (+)
G172756 NA non-coding upstream 146384 1962721 ~ 1964604 (+)
G172789 LOC108441067 non-coding downstream 10232 2125554 ~ 2130319 (+)
G172800 NA non-coding downstream 23317 2138639 ~ 2227606 (+)
G172898 NA non-coding downstream 392159 2507481 ~ 2507692 (+)
G172899 NA non-coding downstream 466088 2581410 ~ 2581838 (+)
G172903 NA non-coding downstream 497904 2613226 ~ 2613513 (+)
G172770 h2afvb,h2afva,LOC107386217,LOC105007341,LOC107668744,LOC107599604,LOC103039302 other upstream 113626 1994708 ~ 1997362 (+)
G172725 ogdh,LOC107554543,LOC107714098,LOC107656768 other upstream 255234 1853282 ~ 1855754 (+)
LOC103041266 NA other upstream 260772 1839351 ~ 1850216 (+)
G172552 NA other upstream 482183 1626799 ~ 1628805 (+)
G172517 NA other upstream 568837 1507320 ~ 1542151 (+)
LOC103031931 LOC103031931,LOC108435131,LOC104953549 other downstream 603287 2718609 ~ 2726076 (+)
unc5c unc5c,LOC108435138,LOC108277026,LOC105911728,LOC106564027,LOC105025160,LOC106568183 other downstream 1349811 3465133 ~ 3739736 (+)
G173094 NA other downstream 1624980 3740302 ~ 3743205 (+)
G173111 LOC108435134,LOC108277016 other downstream 1793620 3908942 ~ 3931991 (+)
gdnf gdnf,LOC107653769,LOC107752627,LOC107692037,LOC107569368,LOC107727951 other downstream 2002712 4118034 ~ 4130482 (+)

Expression


Co-expression Network