phax (phax)


Basic Information

Item Value
gene id phax
gene name phax
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 24505637 ~ 24509580 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252431.3
aagaagaagaagaagaagaacagacgAGCCGAATGACGTCGTGCGCGTGTAACTACGCCAAACTTCCGTGCGGGAGAAATGGCGGGTGATCGCAACAGAGACACAATGGAGGATCTGGAGGATGGAGAGCTCAGCGGCTCAGAGCCCGAAATGCAGGCGGCTTCAGATGACCGGCCCCAGATGCCCTCAGCAGGAGCCTTTTCAAGTCAGTTCTTCCAAAGAAGAGATGCACTGCCAGCGGTTCCACCCACCAACAGTTACCGCAGTTCCATGCAAGCCGACTCCAGCGACAGCAACTCTGACTCAGAGGAAGAGGCTGCTCTTTGGAGGCGAAAGCGGCAGAAATGTTCCAGTGTCCCGGCTCCTTTGCCTCCTGCACCGTTTGGAGCTCCCAGGGCTGCTACAGGGCCCCCAGGCCGTAAGGTGAACAACATTTGGGGCTCTGTGGTGCAGGAGCAGAACCAGGACGCTGTTGCGGCAGAGCTTGGCATCTTTGGGGTGGAGGGAGGCATAAGTATGGACAATCGTCAGAGCGAGACATACAACTACATCCTGGCACGCAAGCTGATTGAAAAGGAGAAGCAGGAGCAGGCACAGGGCATGGAGGCTATGCTGGACAACCAGCTAGAGCAGTATATGCAGCATGAAACACCAGAAGAGCAGAGTGACTGCCACCTTAAGAGGAAGCGGTCAGCCAAAGATAGGCTGGGGGCTAGAGCTGAGATGGACTTAAAGGGACGTTATGAGATTACTCCAGAGGACCCTGAAGAGAAAGTAATTGATGAAATAGCTCATAGgttAATGGAGCCAAAGAAGGAGTTAATAGAACGTGTTGTGAAGGTGATCGGGGCGAAGAAAGCAATAGAGCTGCTTTCAGAGACTGCAACAATTGAACAAAACGGAGGTCTTTACACTGTGGATGGCAGTAGAAGGCGGACCCCTGGAGGGGTGTATTTAAACCTACTGAAGAACACTCCTAGTATTACTCATGATGAAGTCAAGgaaATATTTCATGACGAGAACCAGAAAGAGTGTACCAGCAAAAAAGCGGCCAAGAAGCGGCGGAGACACGTTGTTGCCAAGAAGATGAAACAAGCTCTCAACACTTTGAACCTGCAAGAGCATGACGATGTCTCTCGAGAAACCTTCGCCAGCGACACCAACGAAGCACTTGAATCCTTGGAGGAGGTTCCTGAGGACCAGCCAGAGCCCGCACACGGCACAGAGGACAGTCCAGTAGTTTATAACTCGAATGATCTTGAAGTCTTCTGATGCATGCGTTCTGCTGCTTACACAACTGACTGGCTAACTGACAGACCGACAAAGACGGACATCAATGATACATTAGGACAGTAAACCTTCTGTTATGATTAAATCCCACAGTCAGAATATTCAGGATGGGTTAAACAGCTTTCAGTTACTTTCAGATATGTATCTTTGACTTGCTCCCTGGTTTCGGCCGCTGATGCGTTTTGGGGACACTAATTTAAAAACCTTCCTCTTCTGTTGGAGAAAATGGACACAACTGGACTGCACTAGAAGGACATGAAACTGATGTCTTGTTAACATGAGTTTTTGGAGTCATTTTCTTTTGTTGAgtttaaacatatttgtttaatgatagccttatactttatatattttttagtgagGCTTATTAAAACTGCACTTGCTCTGATTCTCTACTAGTATTAAATGGCTGTTTGTTAAATTTTCTAACATAAATTAAGCATAGTAGTGCACTAAATTGGAATCATTCCCTAGGTAAATGGTGGAAAATATCTGGAAACCCAGCTGTTAGGAAAATCTCACTAAACCTGTTCAGTCTTGGAGATGTTTCTGCAATTCATGTTCATTAAAGAGAAAACTATTCTAATTAATTGAACACA

Function

symbol description
phax Predicted to enable RNA binding activity. Predicted to be involved in snRNA export from nucleus. Predicted to act upstream of or within protein transport. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human PHAX (phosphorylated adaptor for RNA export).

NR:

description
phosphorylated adapter RNA export protein

GO: NA

KEGG:

id description
K14291 PHAX; phosphorylated adapter RNA export protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252431.3 True 1889 mRNA 0.47 5 24505637 24509580

Neighbor

gene id symbol gene type direction distance location
trnam-cau_40 NA coding upstream 3692 24501874 ~ 24501945 (+)
gramd2b gramd3 coding upstream 22754 24472206 ~ 24482883 (+)
LOC111195073 NA coding upstream 797788 23703987 ~ 23707849 (+)
LOC103037096 LOC108410414,LOC108277158,LOC105901021,LOC106603263 coding upstream 815282 23541850 ~ 23690355 (+)
ppp2cb ppp2cb,LOC107758729 coding upstream 990926 23503307 ~ 23514711 (+)
lmnb1 lmnb1 coding downstream 15233 24524813 ~ 24542250 (+)
LOC103034699 NA coding downstream 81393 24590973 ~ 24596595 (+)
megf10 megf10,LOC107705845 coding downstream 94076 24603656 ~ 24676046 (+)
prrc1 prrc1,LOC107572184,LOC107705848,LOC107673757 coding downstream 174497 24684077 ~ 24699125 (+)
ctxn3 ctxn3,LOC107711251 coding downstream 216497 24726077 ~ 24739475 (+)
LOC111195075 NA non-coding upstream 203790 24298112 ~ 24301847 (+)
G178805 NA non-coding upstream 212293 24291975 ~ 24293344 (+)
G178781 NA non-coding upstream 314380 24187986 ~ 24191257 (+)
G178634 NA non-coding upstream 986423 23516311 ~ 23519214 (+)
G178635 NA non-coding upstream 989736 23515575 ~ 23515901 (+)
G178844 NA non-coding downstream 3008 24512588 ~ 24513208 (+)
G178853 NA non-coding downstream 76927 24586507 ~ 24587635 (+)
LOC111195077 NA non-coding downstream 89293 24598873 ~ 24599611 (+)
G178873 NA non-coding downstream 148827 24658407 ~ 24678663 (+)
G178896 NA non-coding downstream 285903 24795483 ~ 24817313 (+)
LOC103032894 LOC108424565 other upstream 51015 24447792 ~ 24454622 (+)
G178485 NA other upstream 1540648 22963447 ~ 22964989 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other upstream 1796080 22689001 ~ 22709557 (+)
G178352 NA other upstream 1959507 22544640 ~ 22546130 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other upstream 2003478 22493440 ~ 22502159 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other downstream 734581 25244161 ~ 25257469 (+)
LOC103024073 LOC108424537 other downstream 2321057 26830637 ~ 26879083 (+)
rnasek rnasek,LOC107554319 other downstream 2404170 26913750 ~ 26916344 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 3014722 27524302 ~ 27525441 (+)
G180235 erg other downstream 6629764 31139344 ~ 31151095 (+)

Expression


Co-expression Network