lmnb1 (lmnb1)


Basic Information

Item Value
gene id lmnb1
gene name lmnb1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 24524813 ~ 24542250 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252433.3
CCCATTTCTTTCATTCGGTTGGGAGACAAAGTAGGGGCTTTGTGGCTTTTGAAtcccttttttcctcttttgtgGGTTTTCCTGAATTCTTATAGCCATAATTTTATTGTGGGATTAGTTGGAAATTAATTGCTTACTTTTATATTactatttaaactaaaaataattctCCGCTGAAGGCCCTTATTTTGTAGTCGCTGGGCTAACGCTACTATATTTAACCGTTTTTTCGTAATTGTGTTTATGAGGGGATATTAGTTACACACTGCAGGATCTTTCACGCGGCTTTTTTTATTGGACCTTTGGACTGGTTCACACGCTACAACGGAGCGCTGAGGACATTCGGTTTACTTGAATAGAAGCATTTTGTGGATTTAGGCTTGTTCTGTTAGCTACAATGGCGACTGCACCCTCCACGCCGGCCGGTCGGAGAATGAGCAGCACGCCGCTGAGCCCCACGCGGATAACGCGGCTGCAGGAAAAGGAAGAGCTCAGTAATCTCAATGACCGCCTCGCCATTTACATCGACAAGGTGCGGAGCCTGGAGTCCGAGAACAGCGTCCTGCACCTGCAGATCTCCGAGAAGGAGGAGGTGAGGAGCCGCGAGCTCACAGGCTTGAAGGCTCTGTATGAGACGGAGCTGGCGGACGCCCGCAGGTCTCTGGACGACACGGCCAAGGAGCGCGCCAGGCTGCAGATTGAGCTGGGGAAGATCCGGACCGAGCACGAGCAGCTGCTGCAGAGCTATGCAAAGAAAGACTCAGACCTGGCTGGTTGTCAGGCCCGGCTTAAAGATGTGGAAGCTCTGCTCAACTCTAAAGAGGCAAGTCTGGCCACTGCACTGTCTGAGAGGAAAGCTCTTGAGGGATCACTGGCTGACCTGCAGGCCCAGATCCAtgagCTTGAGGCGAGTTTGGCATCAGCAAGGAAGCAGCTGGGGGATGAGACACTGCTGAGAGTGGACCTGGAGAACCGATGCCAGAGCTTGGTGGAGGAGCTTGAGTTTCGCAAGAACATGTTTGAGGAGGAGATCAAGGACACTCGGCGCAGACATGAGactagactggtggaggtggacTCTGGCCGTCAAGTCGAGTACGAATTTAAGCTGGCCCAGGCTCTGACTGACATGAGACAGCAGCACGATGACCAAGTCAAAGTTTACAAGGAGGAGATGGAGCAGACGTACATGGCTAAGCTGGAGAACGTGCGCCTTTCCTCCGAGATGAACAGCAGTTCTGCTAGCATGGCTCGTGAGGAGCTGAAGGAAGCTTCTCTGAGGGTCGAGAGCCTGACCGCTCAGCTGTCTGGTCTGCAGAAGGAGGCTCGAGGCTGGCAGGACCGTATCAATGAGCTGGAGTCTGCTCTGGCTCAGGAGAAGGACCTGAGCCGCAGGATGCTCGCAGATAAAGAGCGTGAGATCTCTGAGATCCGAGCCAAGATGCAGCTGCAGCTGGAGGAGTACGAGCAACTGCTGGATGTCAAACTGGCCCTGGACATGGAGATTAATGCCTACAGGAAACTGCTAGAAGGAGAAGAGGAGAGACTGAAGCTGTCTCCCAGCCCCTCGTCCCGTGTAACCGTGTCCCGAGCTTCGTCCAGCCGCAGCGTTAGAACCACGCGTGGGAAGAGAAAGCGTGTGGACGTGGAGGAGTCTGAGGCCAGCAGCAGCGTCAGCATCGCCCACTCTGCCTCTGCCACTGGCAACGTCTGCATCGATGAGCTCGACGTGGACGGGAAATTTATCCGGCTCCACAACACCTCCGATCAGGACCAGCCAATGGTGGGGTTTGAAATGACCAGAACTATTGGAGATTCTTCTGCTACCTACAAGTTTACTCCCAAATATGTTCTGAAAGCTGGACAGAAAGTCACTaTCTGGGCATCTAATGCAGGCGTGAGCTCGAGCCCTCCAACTGACCTAATCTGGAAGAGTCAGAGCTCTTGGGGTACTGGAGAAAATGTGAAGGTGGTCCTGACCAATGGCGATGGAGAGGAAGTGGCTGTAAGAAGTACAGTGTTCAAGACTGCCACCgtagaagaggaggaagaggatgatgaGGGTGTGGAGGTTGTTGAGGAACATCTCTTCCATCAGCAGGGAGATCCACGCGCTGCCAAGAGGGGCTGCTCAATCATGTGAGCGCAGCAACACTACCCTTCCACTACAACCAGTCTCAGCTGCCAATACTATAACCACCTCAGAACTATTTTTGTATCACTAGTATAACTgagtgatttgatttttttttcttgatttttagttttaaatgattgtaaaccatttttggtacatttctatttttattttgtatgtgaATGCAGAAGTTTTTGCATCGCAACTTGCTTTTGTATAAACCAAAATTTTGTGATCAGTTGGGGACTCCTTAGTGAGACAGAGAGCTCTGTGACAGTTTAGGCAGCTTTTGCAAAATCACCCAGTCCTCCAGGTGCTGTGATCTTACCTTTTTTATGtgtatctcaattttttttaaagatagcaTTTTAAAGGCCTCTTTATAGAAGTTATAATTTTATACTAGCTTTCTAGTTTTTAGCTGGAGGGGTTTGTTGCATATAATGGAATGTAGACTAGCTCAAGACATGGGAAAATGTCGAAATGGATTGCCCATTCAGAGAACACTTGAAAAGCAGGCAGACAGGTGTGTGCATTCATGTAGTAAACAGTGTTTAATGATGAGGACTTCCTCATGCATAAGTCTGCAGTTCACCACATGGTGTCAGTCTAGAGTCTCTGAAGGCAGTCAGACAAACGGCAGTAAAAACTGAAGAACCTTTCAGGCTGTTGTGATTTAAAATTGATTGTATGCTATTAAGGAAAGATTGGTCTCAAGag
>XM_022681293.1
AACCCATTTCTTTCATTCGGTTGGGAGACAAAGTAGGGGCTTTGTGGCTTTTGAAtcccttttttcctcttttgtgGGTTTTCCTGAATTCTTATAGCCATAATTTTATTGTGGGATTAGTTGGAAATTAATTGCTTACTTTTATATTactatttaaactaaaaataattctCCGCTGAAGGCCCTTATTTTGTAGTCGCTGGGCTAACGCTACTATATTTAACCGTTTTTTCGTAATTGTGTTTATGAGGGGATATTAGTTACACACTGCAGGATCTTTCACGCGGCTTTTTTTATTGGACCTTTGGACTGGTTCACACGCTACAACGGAGCGCTGAGGACATTCGGTTTACTTGAATAGAAGCATTTTGTGGATTTAGGCTTGTTCTGTTAGCTACAATGGCGACTGCACCCTCCACGCCGGCCGGTCGGAGAATGAGCAGCACGCCGCTGAGCCCCACGCGGATAACGCGGCTGCAGGAAAAGGAAGAGCTCAGTAATCTCAATGACCGCCTCGCCATTTACATCGACAAGGTGCGGAGCCTGGAGTCCGAGAACAGCGTCCTGCACCTGCAGATCTCCGAGAAGGAGGAGGTGAGGAGCCGCGAGCTCACAGGCTTGAAGGCTCTGTATGAGACGGAGCTGGCGGACGCCCGCAGGTCTCTGGACGACACGGCCAAGGAGCGCGCCAGGCTGCAGATTGAGCTGGGGAAGATCCGGACCGAGCACGAGCAGCTGCTGCAGAGCTATGCAAAGAAAGACTCAGACCTGGCTGGTTGTCAGGCCCGGCTTAAAGATGTGGAAGCTCTGCTCAACTCTAAAGAGGCAAGTCTGGCCACTGCACTGTCTGAGAGGAAAGCTCTTGAGGGATCACTGGCTGACCTGCAGGCCCAGATCCAtgagCTTGAGGCGAGTTTGGCATCAGCAAGGAAGCAGCTGGGGGATGAGACACTGCTGAGAGTGGACCTGGAGAACCGATGCCAGAGCTTGGTGGAGGAGCTTGAGTTTCGCAAGAACATGTTTGAGGAGGAGATCAAGGACACTCGGCGCAGACATGAGactagactggtggaggtggacTCTGGCCGTCAAGTCGAGTACGAATTTAAGCTGGCCCAGGCTCTGACTGACATGAGACAGCAGCACGATGACCAAGTCAAAGTTTACAAGGAGGAGATGGAGCAGACGTACATGGCTAAGCTGGAGAACGTGCGCCTTTCCTCCGAGATGAACAGCAGTTCTGCTAGCATGGCTCGTGAGGAGCTGAAGGAAGCTTCTCTGAGGGTCGAGAGCCTGACCGCTCAGCTGTCTGGTCTGCAGAAGGAGGAAGAGGAGACTTTGAACAGAGGCAGCAGTAGAGGAGGAGGGGAGTGTCAGGATCAGGCTCGAGGCTGGCAGGACCGTATCAATGAGCTGGAGTCTGCTCTGGCTCAGGAGAAGGACCTGAGCCGCAGGATGCTCGCAGATAAAGAGCGTGAGATCTCTGAGATCCGAGCCAAGATGCAGCTGCAGCTGGAGGAGTACGAGCAACTGCTGGATGTCAAACTGGCCCTGGACATGGAGATTAATGCCTACAGGAAACTGCTAGAAGGAGAAGAGGAGAGACTGAAGCTGTCTCCCAGCCCCTCGTCCCGTGTAACCGTGTCCCGAGCTTCGTCCAGCCGCAGCGTTAGAACCACGCGTGGGAAGAGAAAGCGTGTGGACGTGGAGGAGTCTGAGGCCAGCAGCAGCGTCAGCATCGCCCACTCTGCCTCTGCCACTGGCAACGTCTGCATCGATGAGCTCGACGTGGACGGGAAATTTATCCGGCTCCACAACACCTCCGATCAGGACCAGCCAATGGTGGGGTTTGAAATGACCAGAACTATTGGAGATTCTTCTGCTACCTACAAGTTTACTCCCAAATATGTTCTGAAAGCTGGACAGAAAGTCACTaTCTGGGCATCTAATGCAGGCGTGAGCTCGAGCCCTCCAACTGACCTAATCTGGAAGAGTCAGAGCTCTTGGGGTACTGGAGAAAATGTGAAGGTGGTCCTGACCAATGGCGATGGAGAGGAAGTGGCTGTAAGAAGTACAGTGTTCAAGACTGCCACCgtagaagaggaggaagaggatgatgaGGGTGTGGAGGTTGTTGAGGAACATCTCTTCCATCAGCAGGGAGATCCACGCGCTGCCAAGAGGGGCTGCTCAATCATGTGAGCGCAGCAACACTACCCTTCCACTACAACCAGTCTCAGCTGCCAATACTATAACCACCTCAGAACTATTTTTGTATCACTAGTATAACTgagtgatttgatttttttttcttgatttttagttttaaatgattgtaaaccatttttggtacatttctatttttattttgtatgtgaATGCAGAAGTTTTTGCATCGCAACTTGCTTTTGTATAAACCAAAATTTTGTGATCAGTTGGGGACTCCTTAGTGAGACAGAGAGCTCTGTGACAGTTTAGGCAGCTTTTGCAAAATCACCCAGTCCTCCAGGTGCTGTGATCTTACCTTTTTTATGtgtatctcaattttttttaaagatagcaTTTTAAAGGCCTCTTTATAGAAGTTATAATTTTATACTAGCTTTCTAGTTTTTAGCTGGAGGGGTTTGTTGCATATAATGGAATGTAGACTAGCTCAAGACATGGGAAAATGTCGAAATGGATTGCCCATTCAGAGAACACTTGAAAAGCAGGCAGACAGGTGTGTGCATTCATGTAGTAAACAGTGTTTAATGATGAGGACTTCCTCATGCATAAGTCTGCAGTTCACCACATGGTGTCAGTCTAGAGTCTCTGAAGGCAGTCAGACAAACGGCAGTAAAAACTGAAGAACCTTTCAGGCTGTTGTGATTTAAAATTGATTGTATGCTATTAAGGAAAGATTGGTCTCAAGag

Function

symbol description
lmnb1 Predicted to be located in intermediate filament. Human ortholog(s) of this gene implicated in adult-onset autosomal dominant demyelinating leukodystrophy and primary autosomal recessive microcephaly. Orthologous to human LMNB1 (lamin B1).

NR:

description
lamin-B1

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K07611 LMNB; lamin B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252433.3 False 2857 mRNA 0.49 11 24524815 24542250
XM_022681293.1 True 2916 mRNA 0.49 12 24524813 24542250

Neighbor

gene id symbol gene type direction distance location
phax phax coding upstream 15233 24505637 ~ 24509580 (+)
trnam-cau_40 NA coding upstream 22868 24501874 ~ 24501945 (+)
gramd2b gramd3 coding upstream 41930 24472206 ~ 24482883 (+)
LOC111195073 NA coding upstream 816964 23703987 ~ 23707849 (+)
LOC103037096 LOC108410414,LOC108277158,LOC105901021,LOC106603263 coding upstream 834458 23541850 ~ 23690355 (+)
LOC103034699 NA coding downstream 48723 24590973 ~ 24596595 (+)
megf10 megf10,LOC107705845 coding downstream 61406 24603656 ~ 24676046 (+)
prrc1 prrc1,LOC107572184,LOC107705848,LOC107673757 coding downstream 141827 24684077 ~ 24699125 (+)
ctxn3 ctxn3,LOC107711251 coding downstream 183827 24726077 ~ 24739475 (+)
slc12a2 slc12a2,LOC107680742 coding downstream 220157 24762407 ~ 24816488 (+)
G178844 NA non-coding upstream 11605 24512588 ~ 24513208 (+)
LOC111195075 NA non-coding upstream 222966 24298112 ~ 24301847 (+)
G178805 NA non-coding upstream 231469 24291975 ~ 24293344 (+)
G178781 NA non-coding upstream 333556 24187986 ~ 24191257 (+)
G178634 NA non-coding upstream 1005599 23516311 ~ 23519214 (+)
G178853 NA non-coding downstream 44257 24586507 ~ 24587635 (+)
LOC111195077 NA non-coding downstream 56623 24598873 ~ 24599611 (+)
G178873 NA non-coding downstream 116157 24658407 ~ 24678663 (+)
G178896 NA non-coding downstream 253233 24795483 ~ 24817313 (+)
G178928 NA non-coding downstream 419048 24961298 ~ 24962524 (+)
LOC103032894 LOC108424565 other upstream 70191 24447792 ~ 24454622 (+)
G178485 NA other upstream 1559824 22963447 ~ 22964989 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other upstream 1815256 22689001 ~ 22709557 (+)
G178352 NA other upstream 1978683 22544640 ~ 22546130 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other upstream 2022654 22493440 ~ 22502159 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other downstream 701911 25244161 ~ 25257469 (+)
LOC103024073 LOC108424537 other downstream 2288387 26830637 ~ 26879083 (+)
rnasek rnasek,LOC107554319 other downstream 2371500 26913750 ~ 26916344 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 2982052 27524302 ~ 27525441 (+)
G180235 erg other downstream 6597094 31139344 ~ 31151095 (+)

Expression


Co-expression Network