march3 (march3)


Basic Information

Item Value
gene id march3
gene name march3
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 24547003 ~ 24586405 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252436.3
aaaaacaaataaaaaatcacttCGAATTATGAGTTGGGTGTCTGGACTGCTACTTTTGACGCATACTCTacataaataatgcattaaattaaataattgttgtattgtattaaataatgtgttaaatttttaaaacaaactaattaaataaacactacagttttacattattataatgttGTGGTTAGTATTTAATGGTCATACTTAATGTGCTGGCTCTGTGTGAAATCattattatacttattatacagtttatttattatacggCCAGCAGGCTGCGCGCTCGTCACTGTTGCTGTGCCTCGGCCTCCCATTGGTCGCCGGTTCTTTGTGGGCAGAGTGTGaagctgctgattggctgagcgcATCCATCGCTGTAAATGCCCGTCTGTAGGACAGAGAGGGGCAGCGGGCGCGCGGTGAACAGCTGAGTTAAAGAGCGCAGAGCCGGACAGCGCGTGCACTGCTGTACCCTGACTGACTATAACCTCCCCCGGGACTCAACTGCAGAACCGGCAGCTTCACACCAGCTCATTCATCCAGGTGCTGAGATGGGAAATGCCTTATAAGCACATCAGGCACCCCGTCCGTCTGCTGCCATGACAACCAGCTGCAATAGCCAGTTACCTGAGGTGTTGACGGACCACGCGGACACTGCGCTTTTGAGATCTGATGGAGAGGTATCTGTTCCAATGGGGAACCTGGACTGCTGTGACCCCGCCCTCCCTGGAAAAACTATGGGTCCTGACAGCGGGCCAACAAACGAGGAGCCGCAGTACTGCAAGCAAAAGGACGTGCCGTTTTTAAACAACGTAACATTCACCAAACAGAGTCCTCTCGTGGATCGACCCATGTGCAGGATCTGTCACGACGGCGGTGGGCAGGAGGAGCTGCTCTCACCGTGTGAGTGTGCGGGGACTCTGGGCACCATCCATCGCAGCTGCCTCGAGCACTGGCTCTCAGCTTCCAGCACCAGCTTCTGCGAGCTCTGCCACTACCAGTTCAGTGTGCAGCGTAAAGCACGGCCTCTGCTGGAGTGGCTGCGTAACCCCGGGCTGCATCAAGAGAAGCGCACACTGTTCGGAGACATGGTGTGTTTCCTGCTCATCACGCCGCTAGCCACCATCTCAGGCTGGCTGTGTCTGCGGGGGGCTGTGGACCACCTTCACTTCTCCAGCAGACTGGAGGCTGTGGGCCTGATCGCTCTCACTGTAGCACTATTCACTATTTACCTCTTCTGGACCCTGGTGTCTCTCAGGTATCACTGCCGTCTGTATAACGAATGGCGTCAGACTAATCAGCGGGTCGTTCTTctgctgcccaaatcacagcgaGAATCGCCGGGTAACCCGTCACTGCCAGGACTGCCACGGACCAAACGACCGTCCAAAGAAACTATAGTCTGACAGGACTTTGGACTCTAAAGGAGAGGACACAGAGGAGCATGGCCTCAACTTGAGAACTGTGGAGACAGATCTGAGTCTTAGCAGGAGATTCCAGAGTGGATTTACTGAGACACACTGATGACTTTGGTCATCTTGTTTAACTCTGAGACTAACTGAGACTACTGAAGGATGTGGATTGCTGTTTCAGAGCATTGGAGACAGAAAAAACAGCTGTTTGTtgactgtaaagttgctgtttttaataGCAACtcgttagcatgatgctaacattAGTTGTGGACATAACATGCTCTTCAGTATATCTCATTCGCTGCGTTGACTTGGGAACATTGAGCAACATTAAGGATCAATGACTGTTTTTGTTAAACCTGGACATTGGCAACACATTGACAGTTCAGAGTCAGCATGGTTCATTTGTTTTCTGCTGGACTCCATGCATACCCCATGTGTACTAAAATAAGgtataatatttaacatatacatatatccaGTTCAAACTGAATGTCTTTCCAAACTTACCTTAATTTGTGGAAGGTTCAAACTCAGTAGATGCCTTTCATATCATATGTTCatacatatatgaccataagtATCCAGACTATCCTTCTATTGCTGACACTGGTGTCCATTTTCACCCAAATTGGACAATAGATAATGAAGTAGTAGTAAAGATGTGTTACCCTTATAAAAAAAGCACTGTCAATAGTAAAATGGGCTGCTGATATGGCTGCACATGAGCCTAAAGCACTGGAGCTGCCGTCTGTAGAGAGATTTGCATAATGATGCACCAGCCAGTATTCTGGGATGAGTAGAACATGTCGCATTTCTGATTTAGCACTAGCATCAATCATCCAACTTCAATGCCTGGCTTGACTTATTATTCTCTTATGACTGAATACAATCAATACAAATCCCCCAGCTATAAATACAGTgtcaaaaaagagacaaaatgcTCATTTATTCTTCGTAATGTCAGTAGAAACATCAGAAAAGGTGTCACACAAAACACTGGACATACACTTTGGACATtggccaaaagtcatgggatagcaaaGTCATAGCATAGCAAAACAATGTGTCCTATGACTGTTACCATCCCATCCCATAGAAggtaaagaacactgcactgacattcAGGATATGCATGTGGGCATATCCCATGAACAGTAAGTTTTAGCcaaatgctgctgctgcactgtgtgtggtaatgccttctaagATTCATTCATATTTATGGTATACTGAgacaaaggtgtcaaaagtattcaaatgcattactcaggtagaagtgtagatactggggtttaaaggataaaagtataaagtaatgtaagggggaaaATGAAATGCCATTAATGACAAAAGCTAAGGCCATGCCatagagtcctatagtgcactagtACCTTGCCTCCcctaaacacattttactaaaagttataaattatattataaaagct
>XM_022681294.1
CTTTTTACACACAAGCTGATCAAACTAATGAACTCACTGCgcttactgaggagagctgagagtgtcACAGCgttaaatcactaaaacagATGGGAAATGCCTTATAAGCACATCAGGCACCCCGTCCGTCTGCTGCCATGACAACCAGCTGCAATAGCCAGTTACCTGAGGTGTTGACGGACCACGCGGACACTGCGCTTTTGAGATCTGATGGAGAGGTATCTGTTCCAATGGGGAACCTGGACTGCTGTGACCCCGCCCTCCCTGGAAAAACTATGGGTCCTGACAGCGGGCCAACAAACGAGGAGCCGCAGTACTGCAAGCAAAAGGACGTGCCGTTTTTAAACAACGTAACATTCACCAAACAGAGTCCTCTCGTGGATCGACCCATGTGCAGGATCTGTCACGACGGCGGTGGGCAGGAGGAGCTGCTCTCACCGTGTGAGTGTGCGGGGACTCTGGGCACCATCCATCGCAGCTGCCTCGAGCACTGGCTCTCAGCTTCCAGCACCAGCTTCTGCGAGCTCTGCCACTACCAGTTCAGTGTGCAGCGTAAAGCACGGCCTCTGCTGGAGTGGCTGCGTAACCCCGGGCTGCATCAAGAGAAGCGCACACTGTTCGGAGACATGGTGTGTTTCCTGCTCATCACGCCGCTAGCCACCATCTCAGGCTGGCTGTGTCTGCGGGGGGCTGTGGACCACCTTCACTTCTCCAGCAGACTGGAGGCTGTGGGCCTGATCGCTCTCACTGTAGCACTATTCACTATTTACCTCTTCTGGACCCTGGTGTCTCTCAGGTATCACTGCCGTCTGTATAACGAATGGCGTCAGACTAATCAGCGGGTCGTTCTTctgctgcccaaatcacagcgaGAATCGCCGGGTAACCCGTCACTGCCAGGACTGCCACGGACCAAACGACCGTCCAAAGAAACTATAGTCTGACAGGACTTTGGACTCTAAAGGAGAGGACACAGAGGAGCATGGCCTCAACTTGAGAACTGTGGAGACAGATCTGAGTCTTAGCAGGAGATTCCAGAGTGGATTTACTGAGACACACTGATGACTTTGGTCATCTTGTTTAACTCTGAGACTAACTGAGACTACTGAAGGATGTGGATTGCTGTTTCAGAGCATTGGAGACAGAAAAAACAGCTGTTTGTtgactgtaaagttgctgtttttaataGCAACtcgttagcatgatgctaacattAGTTGTGGACATAACATGCTCTTCAGTATATCTCATTCGCTGCGTTGACTTGGGAACATTGAGCAACATTAAGGATCAATGACTGTTTTTGTTAAACCTGGACATTGGCAACACATTGACAGTTCAGAGTCAGCATGGTTCATTTGTTTTCTGCTGGACTCCATGCATACCCCATGTGTACTAAAATAAGgtataatatttaacatatacatatatccaGTTCAAACTGAATGTCTTTCCAAACTTACCTTAATTTGTGGAAGGTTCAAACTCAGTAGATGCCTTTCATATCATATGTTCatacatatatgaccataagtATCCAGACTATCCTTCTATTGCTGACACTGGTGTCCATTTTCACCCAAATTGGACAATAGATAATGAAGTAGTAGTAAAGATGTGTTACCCTTATAAAAAAAGCACTGTCAATAGTAAAATGGGCTGCTGATATGGCTGCACATGAGCCTAAAGCACTGGAGCTGCCGTCTGTAGAGAGATTTGCATAATGATGCACCAGCCAGTATTCTGGGATGAGTAGAACATGTCGCATTTCTGATTTAGCACTAGCATCAATCATCCAACTTCAATGCCTGGCTTGACTTATTATTCTCTTATGACTGAATACAATCAATACAAATCCCCCAGCTATAAATACAGTgtcaaaaaagagacaaaatgcTCATTTATTCTTCGTAATGTCAGTAGAAACATCAGAAAAGGTGTCACACAAAACACTGGACATACACTTTGGACATtggccaaaagtcatgggatagcaaaGTCATAGCATAGCAAAACAATGTGTCCTATGACTGTTACCATCCCATCCCATAGAAggtaaagaacactgcactgacattcAGGATATGCATGTGGGCATATCCCATGAACAGTAAGTTTTAGCcaaatgctgctgctgcactgtgtgtggtaatgccttctaagATTCATTCATATTTATGGTATACTGAgacaaaggtgtcaaaagtattcaaatgcattactcaggtagaagtgtagatactggggtttaaaggataaaagtataaagtaatgtaagggggaaaATGAAATGCCATTAATGACAAAAGCTAAGGCCATGCCatagagtcctatagtgcactagtACCTTGCCTCCcctaaacacattttactaaaagttataaattatattataaaagct

Function

symbol description
march3 E3 ubiquitin-protein ligase MARCH3

NR:

description
E3 ubiquitin-protein ligase MARCH3

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008270 zinc ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
K10658 MARCH3; E3 ubiquitin-protein ligase MARCH3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252436.3 True 2863 mRNA 0.45 5 24547003 24586405
XM_022681294.1 False 2401 mRNA 0.45 5 24547003 24577156

Neighbor

gene id symbol gene type direction distance location
LOC103023834 LOC108424422 coding downstream 30405 24511831 ~ 24516598 (-)
aldh7a1 aldh7a1 coding downstream 46574 24489798 ~ 24500429 (-)
LOC103023192 LOC108424566,LOC108277262,LOC105901058,LOC106603267,LOC105010780 coding downstream 257710 24252134 ~ 24289293 (-)
LOC103022888 NA coding downstream 297021 24234922 ~ 24249982 (-)
apbb1 apbb1 coding downstream 315339 24217172 ~ 24231664 (-)
c20h5orf63 NA coding upstream 855 24587260 ~ 24589663 (-)
LOC103037512 LOC103037512,LOC108423775 coding upstream 376221 24962626 ~ 24980089 (-)
kiaa1024l NA coding upstream 459809 25046214 ~ 25052132 (-)
LOC103039311 LOC103039311 coding upstream 584018 25170423 ~ 25178447 (-)
vps36 vps36,LOC107720661,LOC107685004,LOC107701118 coding upstream 718043 25304448 ~ 25321697 (-)
G178862 lmnb1 non-coding downstream 4256 24524930 ~ 24542747 (-)
G178864 NA non-coding downstream 13815 24530794 ~ 24533188 (-)
G178859 phax non-coding downstream 37493 24505065 ~ 24509510 (-)
G178855 gramd3 non-coding downstream 69484 24472432 ~ 24477519 (-)
G178823 NA non-coding downstream 253659 24291892 ~ 24293344 (-)
LOC111195076 NA non-coding upstream 8840 24595245 ~ 24602315 (-)
G178880 NA non-coding upstream 17246 24603651 ~ 24625825 (-)
G178890 NA non-coding upstream 88246 24674651 ~ 24678699 (-)
G178900 prrc1 non-coding upstream 97701 24684106 ~ 24689547 (-)
LOC111195078 NA non-coding upstream 134808 24721213 ~ 24726656 (-)
sh2d4a sh2d4a other downstream 1589777 22945161 ~ 22957226 (-)
LOC111195067 NA other downstream 1605339 22935490 ~ 22941664 (-)
G178450 NA other downstream 1874320 22672132 ~ 22672683 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other downstream 2037220 22501318 ~ 22509783 (-)
G178426 NA other downstream 2090224 22455497 ~ 22456779 (-)
G178982 hint1,LOC107665476 other upstream 544577 25130982 ~ 25134156 (-)
LOC103025094 zgc:171929,LOC107690845,LOC107575147,LOC107671611,LOC105905449 other upstream 616920 25203325 ~ 25207386 (-)
thsd1 thsd1 other upstream 707270 25293675 ~ 25303083 (-)
LOC103043022 LOC108410630,LOC107556853 other upstream 777527 25363932 ~ 25472244 (-)
LOC103047293 LOC108410718,LOC106581537 other upstream 1069850 25656255 ~ 25864474 (-)

Expression


Co-expression Network