LOC103039311 (LOC103039311)


Basic Information

Item Value
gene id LOC103039311
gene name LOC103039311
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 25170423 ~ 25178447 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252449.3
CTACAAGCTGAGAAGCATTACGACATTGGCTGGGCTGTGTTGGCTGGAGGTCAGCAGTCTCTTGTGGATAACGCTTGGCTGTTTGACAGTGTTTTCAGAATAAAAGgtgctacagcagcagcaggactgACAGAGTTGCTTTCAGAGCTTCTGGAGTCTGAGAATAAACCAGTACAGaaTGATGGCATCTGTAGCATGTGGTCCACAGGATTCCTCCACCGAAGAGCTTCATTTGCAAAGGAGAGGACTGCGTCTTCCATACCAGATCTTTCCAGAGACAGCGGAAGACTGTGAGGCACTGGAGAGGCCAGTGGGTCAGAGAGGCCGCCTGCCGTCTATAGTGGTGGACCCCACCCAGGTGAGCGAGGAGGAGAGAGGTGGGCTGCCGTGGCCTCTGCAGAGACACGCTTCTGTGTCCGAGGAGGATGATGAGTCTTTCCAGGATTGTGCATCACAGAACAGCGAATCGGAACAATCAGAGCAGGGGAATGCAGAGAGCAGTGGAGATGAGCGGGGGCTTCATATCAATCACTCACCAGCTAGTGTACAGCCTGGACTGATGGACTGCTCTCGTCTCACTCCTCCACAGTCCCCCACCTCTCCCGAAGTAGCACCACCCTGCTTTAGAGGCTGAACCAtcacaaaaatgagaaatgcaagAAGAAAAGCTGCCTTAGGAGCTCCACACAGCAGTTCACACCTGTACTTCATTCTTAAAGATTAAAACATATTCagcatattttcttatttgaggGAAATGTAATGGTTTCAGGCTTTAAGATGCTATTAAGTTTAAGAGTGGAGAACTTTTGCAAACAGAAAGTGCAGttaaatggttttatttatttatttattttttaagctttaGTTGAAGTTTCTAAGCATAGTGAATGAACTATGACCTAACATGAACTGTAAACCCACACAAGAACGGGGGTGCTTGAGGAGGCTTCCCCAGATTTTAGGATGATTATTTAGCTGCACCagctaaaattaattaataatgaataatctgGGCAAAGTAAAGACCTGTGCGCTTGTTTTATGAGGTCAAACACTGCTTAGGTTAATGACGCATTTTCATCCCAGAGATGATTCACCTCCAAATCTTTTCCTCGCCAACTGCCGACCATTTGGATGCATCTCACTAACACATAGAATGATAGTGTATTATAAACCAGTCCTGTGACTGAAAGCGGCCTAATATACATTGCTATCAGCAATGTTATTGACCTCCTCTTAGCTGACTAGCATGTGCATCAGTGTTAAATGTGTCTACACATTATGTTCTGTTCTATTGAAGATTCCACAGTGAATGATGTGCTGTATATGCTGCTTAACATTTCAGTGACGTTATGTATAAGTTCAAGCtattctgtgattttattttctaaggaagttatttgtattatttttcctttctttttgtaGTTTTAGTGTTCTGGAGcattctctttgtctttttattgtgCTTCCTGCTTTCATTGCCATAATGCAGAGATTACACattatagcttttttttaataaaatatctatgttttccttc
>XM_022681306.1
AACCCCTGGCTTGGGGAGACAATAGTGAATCATATGCTGCCTGAATGGTGTATTGATGCCATCTACAGGGCAGAAAGGTGTTTTCAGAATAAAAGgtgctacagcagcagcaggactgACAGAGTTGCTTTCAGAGCTTCTGGAGTCTGAGAATAAACCAGTACAGaaTGATGGCATCTGTAGCATGTGGTCCACAGGATTCCTCCACCGAAGAGCTTCATTTGCAAAGGAGAGGACTGCGTCTTCCATACCAGATCTTTCCAGAGACAGCGGAAGACTGTGAGGCACTGGAGAGGCCAGTGGGTCAGAGAGGCCGCCTGCCGTCTATAGTGGTGGACCCCACCCAGGTGAGCGAGGAGGAGAGAGGTGGGCTGCCGTGGCCTCTGCAGAGACACGCTTCTGTGTCCGAGGAGGATGATGAGTCTTTCCAGGATTGTGCATCACAGAACAGCGAATCGGAACAATCAGAGCAGGGGAATGCAGAGAGCAGTGGAGATGAGCGGGGGCTTCATATCAATCACTCACCAGCTAGTGTACAGCCTGGACTGATGGACTGCTCTCGTCTCACTCCTCCACAGTCCCCCACCTCTCCCGAAGTAGCACCACCCTGCTTTAGAGGCTGAACCAtcacaaaaatgagaaatgcaagAAGAAAAGCTGCCTTAGGAGCTCCACACAGCAGTTCACACCTGTACTTCATTCTTAAAGATTAAAACATATTCagcatattttcttatttgaggGAAATGTAATGGTTTCAGGCTTTAAGATGCTATTAAGTTTAAGAGTGGAGAACTTTTGCAAACAGAAAGTGCAGttaaatggttttatttatttatttattttttaagctttaGTTGAAGTTTCTAAGCATAGTGAATGAACTATGACCTAACATGAACTGTAAACCCACACAAGAACGGGGGTGCTTGAGGAGGCTTCCCCAGATTTTAGGATGATTATTTAGCTGCACCagctaaaattaattaataatgaataatctgGGCAAAGTAAAGACCTGTGCGCTTGTTTTATGAGGTCAAACACTGCTTAGGTTAATGACGCATTTTCATCCCAGAGATGATTCACCTCCAAATCTTTTCCTCGCCAACTGCCGACCATTTGGATGCATCTCACTAACACATAGAATGATAGTGTATTATAAACCAGTCCTGTGACTGAAAGCGGCCTAATATACATTGCTATCAGCAATGTTATTGACCTCCTCTTAGCTGACTAGCATGTGCATCAGTGTTAAATGTGTCTACACATTATGTTCTGTTCTATTGAAGATTCCACAGTGAATGATGTGCTGTATATGCTGCTTAACATTTCAGTGACGTTATGTATAAGTTCAAGCtattctgtgattttattttctaaggaagttatttgtattatttttcctttctttttgtaGTTTTAGTGTTCTGGAGcattctctttgtctttttattgtgCTTCCTGCTTTCATTGCCATAATGCAGAGATTACACattatagcttttttttaataaaatatctatgttttccttc

Function

NR:

description
protein LBH-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252449.3 True 1547 mRNA 0.43 4 25170423 25177532
XM_022681306.1 False 1536 mRNA 0.43 5 25170423 25178447

Neighbor

gene id symbol gene type direction distance location
kiaa1024l NA coding downstream 118291 25046214 ~ 25052132 (-)
LOC103037512 LOC103037512,LOC108423775 coding downstream 190334 24962626 ~ 24980089 (-)
c20h5orf63 NA coding downstream 580760 24587260 ~ 24589663 (-)
march3 march3 coding downstream 584018 24547003 ~ 24586405 (-)
LOC103023834 LOC108424422 coding downstream 653825 24511831 ~ 24516598 (-)
vps36 vps36,LOC107720661,LOC107685004,LOC107701118 coding upstream 126001 25304448 ~ 25321697 (-)
LOC103043328 LOC108444414 coding upstream 180785 25359232 ~ 25363323 (-)
LOC103044157 slc7a1,LOC103044157,LOC108410642,LOC107592154,LOC107720662,LOC107685000,LOC108277031 coding upstream 301741 25480188 ~ 25506865 (-)
LOC103044637 paxbp1,LOC107592156 coding upstream 330275 25508722 ~ 25522398 (-)
ltn1 ltn1 coding upstream 1574445 26752892 ~ 26782177 (-)
G178999 NA non-coding downstream 2286 25167341 ~ 25168137 (-)
G178986 NA non-coding downstream 34407 25135452 ~ 25136016 (-)
G178963 NA non-coding downstream 147532 25022639 ~ 25022891 (-)
G178962 NA non-coding downstream 150260 25013702 ~ 25020163 (-)
G178954 NA non-coding downstream 207893 24961165 ~ 24962530 (-)
G179067 NA non-coding upstream 65744 25244191 ~ 25244617 (-)
G179069 tpte2,LOC108410538,LOC108276937,LOC107718790,LOC107701101,LOC107685006 non-coding upstream 79330 25257777 ~ 25259641 (-)
G179057 tpte,tpte2,LOC108410538,LOC108276937,LOC107718790,LOC107701101,LOC107685006 non-coding upstream 82072 25260519 ~ 25317264 (-)
G179075 LOC108444483 non-coding upstream 110668 25289115 ~ 25290939 (-)
G179085 stoml3b,LOC103043838,LOC108444492,LOC103140675,LOC103475509,LOC102232466,LOC101162729,LOC102781741,LOC107087919,LOC104923823 non-coding upstream 160350 25338797 ~ 25358939 (-)
G178982 hint1,LOC107665476 other downstream 36267 25130982 ~ 25134156 (-)
sh2d4a sh2d4a other downstream 2213197 22945161 ~ 22957226 (-)
LOC111195067 NA other downstream 2228759 22935490 ~ 22941664 (-)
G178450 NA other downstream 2497740 22672132 ~ 22672683 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other downstream 2660640 22501318 ~ 22509783 (-)
LOC103025094 zgc:171929,LOC107690845,LOC107575147,LOC107671611,LOC105905449 other upstream 24878 25203325 ~ 25207386 (-)
thsd1 thsd1 other upstream 115228 25293675 ~ 25303083 (-)
LOC103043022 LOC108410630,LOC107556853 other upstream 185485 25363932 ~ 25472244 (-)
LOC103047293 LOC108410718,LOC106581537 other upstream 477808 25656255 ~ 25864474 (-)
G179569 NA other upstream 2261784 27440231 ~ 27443316 (-)

Expression


Co-expression Network