LOC103040246 (LOC108444483)


Basic Information

Item Value
gene id LOC103040246
gene name LOC108444483
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 25288607 ~ 25292893 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252452.3
ttttggcacctTATCCGTTTGTACCAAAACAACATTGTCTTGAAAGAAGTCAGTGGAATGTAAGGAATGGGAAATGGTGAAACACTTTCTCTGGATTTAATAGAGACCATGCGTAACAAACTGCTCCTATAAATAATGGGAATAAAACTTAAAAGGCGGCAACACCTGAGCTCTCAGTCTGCAGAGGACCCAGTGGTTTAGGGATGAGGCTAGCTGTGCGCATTTCATACTGCTGTCAGGATATCTCCCTCCGTTTAGGCTGTTAAAACGAGGTTAaagacttttagactttttaaacattttgttttctttggtccaatttttgtctgtctctttctactGGTCATGTCAGCAGCACTGATGCTCTTTATCCTGGTGTCCTATGGAATTGCGTCATCTAGTGTGTTAGGAGATGATGAGTGTCATGTGGAGGTGTCTAATCTAAGAGCTAGTATACAGAAGCTTGATGAAGTGTTGTTGCTTGGCGAGTGGAAACTGGCGCACATGCGTGCACACCGCCGCTTCAAACAGGTGCCCAAACTGGATCCATTGATAGACCACAACGAGACCACCTTACCATCACTGCCGAGCACCGGGGGAGACATACTGGTTCATGACAGAGATTGCTCTGAGCTGTTTGACAGAATAAGGCCTAATAGTGGGTTCTACAGGATTAAACCCAAACCAACAATGGAGCCTTTCCTGGTCTACTGCGATATGGATGATGGAGGAGGATGGACTGTAATGCAGAAACGTTGCAATGGAAAAGTGGACTTTAACAGAGACTGGGAGGAGTATAAGAATGGATTTGGTAATTTCCAGTTAAGTAAAGATGAGTTCTGGCTGGGCAATGATCGTATTCACATCTTGCTGAATAGAGGACAAAATGTGATGAAGATTGATTTGATGGACTGGAATGGACAGAAATCATATGCAATATATGACAACTTCAGAGTGGCAgatgaaaaaGATAAGTACAGGCTGCATTATGGCATGTACAGTGGCCGGGCGGGGGATGCTTTATCTGGTGGAAGTAACATGGTGGAGCAGTGGTCTGCCTCCCACAGCGGCATGGGGTTCAGCACCAGGGACCAGGATAATGATCGCTACCTGCAAGGAAGCTGTGCCAAAGAGAACAAAGGAGGCTGGTGGTACAACAGGTGCCATGCTGCTAATCTGAACGGACGATTTTATCGAGGGGGAACGTACACAGCCAATCATGACAACGGAGTGGTGTGGAGCACCTGGAAAGGGCTTTGGTACTCCCTCAGACAAACAAGCATGAAGGTGCGGCCTGCGGCTTTTATGGACAGTCTGGGCAGTGGGGCAGGACCTGATGCCTAGTTAAAACCCTCTGTCTCATTTCTATGCTTATATCTTCACTTTATATCTACACTCCAAGAGAATTGTATTTGTAAGTGAACTTTAGACTACAGCATTATATCAAAGAAAGTGGTGTACAGAAGTGGCTTATCTTAATATATCCTATACTGACAAATACTGACAAATCTAAGAAATGAGTGTACTTTATTTACTGAGAAATATTTGACATGTTCCTTTGGGATATCTTTCTAAAGCATGCGATTATATTACAAATCTAGACATTAAATACACAATAGTGTGCATGATAAAGTAAACAAGCATTCAAAATCTA

Function

NR:

description
PREDICTED: fibrinogen-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252452.3 True 1654 mRNA 0.43 7 25288607 25292893

Neighbor

gene id symbol gene type direction distance location
vasp LOC108423768,LOC107575450 coding upstream 52785 25216130 ~ 25235822 (+)
dmpk dmpk coding upstream 84925 25179724 ~ 25203682 (+)
dact3 NA coding upstream 130326 25137893 ~ 25158281 (+)
hint1 hint1,LOC107665476 coding upstream 154452 25131225 ~ 25134155 (+)
chsy3 chsy3 coding upstream 161484 25055847 ~ 25127123 (+)
proser1 proser1,LOC107556855 coding downstream 30455 25323348 ~ 25336596 (+)
LOC103043838 stoml3b,LOC103043838,LOC108444492,LOC107556874,LOC108277281,LOC102781741,LOC107685018,LOC107720596,LOC101474847 coding downstream 46695 25339588 ~ 25358610 (+)
LOC103025709 NA coding downstream 233650 25526543 ~ 25550096 (+)
LOC103044955 slc43a2b,LOC103044955,LOC108410672,LOC108277386,LOC107701113,LOC107720664,LOC107684998 coding downstream 264171 25557064 ~ 25586563 (+)
LOC103045464 pitpnab,pitpna,LOC103045464,LOC108276543,LOC105890453,LOC108237022,LOC108410689,LOC107386993 coding downstream 296930 25589823 ~ 25617224 (+)
LOC111195080 tpte2,LOC108410538,LOC108276937,LOC107718790,LOC107701101,LOC107685006 non-coding upstream 28966 25257793 ~ 25259641 (+)
G179014 NA non-coding upstream 35058 25252524 ~ 25253549 (+)
G178998 NA non-coding upstream 120474 25167340 ~ 25168133 (+)
G178987 NA non-coding upstream 151388 25136750 ~ 25137219 (+)
G178985 NA non-coding upstream 152613 25135484 ~ 25135994 (+)
G179028 NA non-coding downstream 71414 25364307 ~ 25367336 (+)
G179034 NA non-coding downstream 166714 25459607 ~ 25481191 (+)
G179173 NA non-coding downstream 478770 25771663 ~ 25771948 (+)
G179177 NA non-coding downstream 585750 25878643 ~ 25878855 (+)
G179183 NA non-coding downstream 671750 25964643 ~ 25968792 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other upstream 31138 25244161 ~ 25257469 (+)
LOC103032894 LOC108424565 other upstream 833985 24447792 ~ 24454622 (+)
G178485 NA other upstream 2323618 22963447 ~ 22964989 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other upstream 2579050 22689001 ~ 22709557 (+)
G178352 NA other upstream 2742477 22544640 ~ 22546130 (+)
LOC103024073 LOC108424537 other downstream 1537744 26830637 ~ 26879083 (+)
rnasek rnasek,LOC107554319 other downstream 1620857 26913750 ~ 26916344 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 2231409 27524302 ~ 27525441 (+)
G180235 erg other downstream 5846451 31139344 ~ 31151095 (+)
G180266 NA other downstream 6140305 31433198 ~ 31433909 (+)

Expression


Co-expression Network