vasp (LOC108423768,LOC107575450)


Basic Information

Item Value
gene id vasp
gene name LOC108423768,LOC107575450
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 25216130 ~ 25235822 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252456.3
AGGCTACATTCAAACTACACACACTTATCGAGCTGTAAACAGCACTACAACAGGCTACGTGTGTAAATGTCTGTTCTGGGCTTTAACCCTCTGTAGTATTAAGAAGTCAACAGTCCACAGACTttggtaactcttgctctttacGTCTCTCCTCCTTTTCAAACCAGGAAACTGCGGGCTCGCTTTCAACAGCAAGCTCGAGCGGATGCCTGTCACCACTGAGAGCTACTTCTCCAACAAACAgatgattttaatttaagcctggcctttttttattattaaactggACTGACCAGTTGAAGCCCTGAAAATGAGTGAGGTGAGTATGTGCCAGGCCCGGGCCACCGTCATGATGTATGATGACGCTGGGAAGCGCTGGGTCCCCGCTGGCTCTGGAGCTCAGGCGGTCAGCAGAGTGCACATCTACCAAAATCCCGGTAACAACACCTACAGAGTGGTGGGCCGCAAACTGCAGGCGGATCAGCAGGTTGTTATTAACTGCCCACTCATCAAAGGCATGAAGTATAATCAGGCCACTGCAAGCTTCCACCAGTGGCGTGATGCACGACAGGTGTGGGGTCTGAACTTCAGCAGTAAGGATGAAGCTGCACAGTTTGCTAGCTCCATGATGTACGCCCTGGAGATGCTCAGTGGTGCACCAGCTCCTCCTCCGCCCGTGCAGAATGGACCAAGCGTTGAAGAGCAGCAGAGaaTGGAGCGAGAAAGACAGGAGCGAGAAAGAcaggagcgagagagacaggaaCGAGAGAGACAGgagcaagagagacagagacaggctgctgctgctcctccagCTGCACCTCCggctcctcctccagctccagctgcagctcctccacCTCCTGGAGTCCCCCCTCCACCTGGACCCCCACCTCCTCCTGCACCCCCTCCCCCACCCTCAGGTGGTGCTCCACCTGCCCCACCACCCCCACcatcaggaggaggaggtggtggaggaggtgcAGGAGCAGGACTAGCTTCAGCTCTTGCTGGGGCTAAACTCCGCAAAACAGCAAAGGATGAGAGTGGAGGTCCTGCTCCTGCAGCAAAGGAGAGCAGCCCAAgctcaggaggaggaggaggtggtggtggtggaggtggtggaggaggaggattgATGGGAGAAATGAGTGCCATCCTCGCAAGAAGACGGAAAGTTGCAGATACTCCAGTGGCGAAGAAAGAAGAAActactACCGATTCACCATCCTCAGATACCAAATCAGAAGAACCCATCAAAAAGCCTTGGGAGAAGTCTGGGACCATACCAAGAAGTAACTCCGCTCCTAAGGGCCAGGAGAAGGGTCCTACTCCAGTCTCCAGTTCACTGAACAGGCAAAGGCCAGGCAGCAGCACAAGTGACTCTGGCTCTAAAGACTCCGGTGTGGATATGGAGAAGTTTAAGCAGGAGATCCTAGAGGAGATGCGTAATGAACTTCAGAAAGTAAAGGATGAAATCATTGGAGCCCtggtggaggagctgcagaagtTAGGCTCCCCCTAGTGGATGAAATCACGCATTGCAGTGAAAAAGTTGAAGCACTGTCAACACAGGAAGCTGCACAAACCAGGAAGCGAACCAGGCTTGTTACTAATGTGTCTGTCAAACTACACATAAAGATGCAGATTCAGCCCAATAAAAAgatgttataatttttttccccagcagcTGCGCTTTATCTATGATTTTTGAAAATGTTCTCTAACACCTTCTCCTCTTTTGCAGTCTCTAGTTTTCTcatattttttctgattttttctgATTTACTGGAACTTTGGAATGTTTCTTTTATGTTATACTTATGCCTTAAAAAAGAGTCTATTTTTTTAGCTTACGATTTACTAAGTGCCTCTCGTTATCAATAATATAGATTAGATTTAGCATACTGTACTAATCCACACATTCACAAATACcacattatttattaagaatCCATCTCTGATTTCACCAgtattatttgtgtttgtaCTGAAAGGCTTTTCCAGGTGAAAGGCTTATGCATGTTATGAACGGTAGGAATGTTATCTTGTCCAGTATTTTCTCTCAGGGATTAGTGAATGccagtaaatgcataatttgtacatttaaacatttcatttgATTTACATTCTCCAGTGTCAATAATGATTTCTGCAGTTGTGGGTGctcttatttgtttctttgcatcttttatgcccttgtttgtttgttttttactgaaatGCTTCTCCAAAGCAGAATGTCTATTGTTATATTAACTGGAATGTACCgtggttttaaaataaatttggcAAACCTTTGA

Function

NR:

description
PREDICTED: vasodilator-stimulated phosphoprotein-like

GO: NA

KEGG:

id description
K06274 VASP; vasodilator-stimulated phosphoprotein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252456.3 True 2303 mRNA 0.47 13 25216130 25235822

Neighbor

gene id symbol gene type direction distance location
dmpk dmpk coding upstream 12448 25179724 ~ 25203682 (+)
dact3 NA coding upstream 57849 25137893 ~ 25158281 (+)
hint1 hint1,LOC107665476 coding upstream 81975 25131225 ~ 25134155 (+)
chsy3 chsy3 coding upstream 89007 25055847 ~ 25127123 (+)
isoc1 isoc1 coding upstream 173210 25030961 ~ 25042920 (+)
LOC103040246 LOC108444483 coding downstream 52785 25288607 ~ 25292893 (+)
proser1 proser1,LOC107556855 coding downstream 87526 25323348 ~ 25336596 (+)
LOC103043838 stoml3b,LOC103043838,LOC108444492,LOC107556874,LOC108277281,LOC102781741,LOC107685018,LOC107720596,LOC101474847 coding downstream 103766 25339588 ~ 25358610 (+)
LOC103025709 NA coding downstream 290721 25526543 ~ 25550096 (+)
LOC103044955 slc43a2b,LOC103044955,LOC108410672,LOC108277386,LOC107701113,LOC107720664,LOC107684998 coding downstream 321242 25557064 ~ 25586563 (+)
G178998 NA non-coding upstream 47997 25167340 ~ 25168133 (+)
G178987 NA non-coding upstream 78911 25136750 ~ 25137219 (+)
G178985 NA non-coding upstream 80136 25135484 ~ 25135994 (+)
G178981 NA non-coding upstream 80735 25134240 ~ 25135395 (+)
LOC111195079 NA non-coding upstream 186456 25024143 ~ 25029674 (+)
G179014 NA non-coding downstream 16702 25252524 ~ 25253549 (+)
LOC111195080 tpte2,LOC108410538,LOC108276937,LOC107718790,LOC107701101,LOC107685006 non-coding downstream 21971 25257793 ~ 25259641 (+)
G179007 NA non-coding downstream 24692 25260514 ~ 25317303 (+)
G179028 NA non-coding downstream 128485 25364307 ~ 25367336 (+)
G179034 NA non-coding downstream 223785 25459607 ~ 25481191 (+)
LOC103032894 LOC108424565 other upstream 761508 24447792 ~ 24454622 (+)
G178485 NA other upstream 2251141 22963447 ~ 22964989 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other upstream 2506573 22689001 ~ 22709557 (+)
G178352 NA other upstream 2670000 22544640 ~ 22546130 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other upstream 2713971 22493440 ~ 22502159 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other downstream 8339 25244161 ~ 25257469 (+)
LOC103024073 LOC108424537 other downstream 1594815 26830637 ~ 26879083 (+)
rnasek rnasek,LOC107554319 other downstream 1677928 26913750 ~ 26916344 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 2288480 27524302 ~ 27525441 (+)
G180235 erg other downstream 5903522 31139344 ~ 31151095 (+)

Expression


Co-expression Network