LOC103043838 (stoml3b,LOC103043838,LOC108444492,LOC107556874,LOC108277281,LOC102781741,LOC107685018,LOC107720596,LOC101474847)


Basic Information

Item Value
gene id LOC103043838
gene name stoml3b,LOC103043838,LOC108444492,LOC107556874,LOC108277281,LOC102781741,LOC107685018,LOC107720596,LOC101474847
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 25339588 ~ 25358610 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252463.3
CTCTCCCCTCACTGCTTCATACAGCTACACACAAACAGAGGCATCACTAGTGGGGAAGCCTGCTATATGGAGATGGAGAGCCAAATAGAGAGAGGAAGTGCTAGCAAGCAAGATTTAATCAGTGAGAATAAACGGGGTCTTGGCTGCTGTGGATGGATCCTTGTTGCTCTCTCAACATTGTTCACAGTGCTGCTCTTCCCCGTCATGATCTTTGTTTGCATTAAGATTGTTCAGGAGTACGAACGCGCTGTAATATTCAGACTGGGCCGAATCACAGCCAGAAAGGCAAAGGGACCAGGTATCTTCTTCATTCTTCCCTGCACTGATTCTTTTATTAAAGTGGACATGAGGACAATCTCATTTGACATCCCTCCCCAAGAGATCCTGACAAAAGACTCTGTGACAGTAAGTGTGGATGGTGTGGTCTACTTCCGGGTCAGTGATCCCATCGCTTCAGTGGCCAACGTGACCAATGCTGATTACTCCACACGCTTGTTGGCCCAAACAACCCTGAGGAATGTTCTGGGCACTAAGAACCTGGCCGAGGTTCTGTCTGACCGTGAGGGAATCTCCCACAGCATGcagTCAACTCTGGACGAGGCCACAGACTCATGGGGCATTAAGGTGGAGCGGGTGGAGATTAAGGACGTAAAGCTTCCTCAACAGCTACAGAGGGCTATGGCTGCTGAGGCAGAGGCGTCCCGCGAGGCCAGAGCCAAGGTGATTGCAGCAGAAGGAGAGATGAATGCATCGCGGGCTCTGAAGGAAGCTTCTCTGGTGATTGCCGAGTCTCCCTCTGCCCTGCAGCTGCGCTACCTGCAGACCCTCAACACCATCGCTGCTGAGAAAAACTCCACCGTCATCTTCCCTGTCCCCATGGACATCCTGGGCCATTTCCTTAAAAAGTGAAGTCAGATATCCATGGATCCTCAATTATAAACATGAGTGTTTACACTGTGAAAAGTCTATACATTTCTTAATGAACTTTTAGGGATTTTTCCATTTGAAGCTGAGGAGGAACCTTCAAGAAAATCATTGAACAACTTGAGAGGTTTCTCTACAGTTTCaaattgaaca

Function

symbol description
stoml3b Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in intestinal bulb. Orthologous to human STOML3 (stomatin like 3).

NR:

description
erythrocyte band 7 integral membrane protein-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K17286 STOM; erythrocyte band 7 integral membrane protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252463.3 True 1077 mRNA 0.49 7 25339588 25358610

Neighbor

gene id symbol gene type direction distance location
proser1 proser1,LOC107556855 coding upstream 2992 25323348 ~ 25336596 (+)
LOC103040246 LOC108444483 coding upstream 46695 25288607 ~ 25292893 (+)
vasp LOC108423768,LOC107575450 coding upstream 103766 25216130 ~ 25235822 (+)
dmpk dmpk coding upstream 135906 25179724 ~ 25203682 (+)
dact3 NA coding upstream 181307 25137893 ~ 25158281 (+)
LOC103025709 NA coding downstream 167933 25526543 ~ 25550096 (+)
LOC103044955 slc43a2b,LOC103044955,LOC108410672,LOC108277386,LOC107701113,LOC107720664,LOC107684998 coding downstream 198454 25557064 ~ 25586563 (+)
LOC103045464 pitpnab,pitpna,LOC103045464,LOC108276543,LOC105890453,LOC108237022,LOC108410689,LOC107386993 coding downstream 231213 25589823 ~ 25617224 (+)
LOC103045760 LOC108410697 coding downstream 266746 25625356 ~ 25643316 (+)
LOC103021428 LOC108410728,LOC108277327 coding downstream 723185 26081795 ~ 26691002 (+)
G179007 NA non-coding upstream 22285 25260514 ~ 25317303 (+)
LOC111195080 tpte2,LOC108410538,LOC108276937,LOC107718790,LOC107701101,LOC107685006 non-coding upstream 79947 25257793 ~ 25259641 (+)
G179014 NA non-coding upstream 86039 25252524 ~ 25253549 (+)
G178998 NA non-coding upstream 171455 25167340 ~ 25168133 (+)
G178987 NA non-coding upstream 202369 25136750 ~ 25137219 (+)
G179028 NA non-coding downstream 5697 25364307 ~ 25367336 (+)
G179034 NA non-coding downstream 100997 25459607 ~ 25481191 (+)
G179173 NA non-coding downstream 413053 25771663 ~ 25771948 (+)
G179177 NA non-coding downstream 520033 25878643 ~ 25878855 (+)
G179183 NA non-coding downstream 606033 25964643 ~ 25968792 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other upstream 82119 25244161 ~ 25257469 (+)
LOC103032894 LOC108424565 other upstream 884966 24447792 ~ 24454622 (+)
G178485 NA other upstream 2374599 22963447 ~ 22964989 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other upstream 2630031 22689001 ~ 22709557 (+)
G178352 NA other upstream 2793458 22544640 ~ 22546130 (+)
LOC103024073 LOC108424537 other downstream 1472027 26830637 ~ 26879083 (+)
rnasek rnasek,LOC107554319 other downstream 1555140 26913750 ~ 26916344 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 2165692 27524302 ~ 27525441 (+)
G180235 erg other downstream 5780734 31139344 ~ 31151095 (+)
G180266 NA other downstream 6074588 31433198 ~ 31433909 (+)

Expression


Co-expression Network