LOC103044637 (paxbp1,LOC107592156)


Basic Information

Item Value
gene id LOC103044637
gene name paxbp1,LOC107592156
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 25508722 ~ 25522398 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252466.3
GGTCATCCCGGAGCCGCCGGCGAGAAAGCGGCGCTAACTCGTCGGGAAGATGGTGCGAGTGCGGCGGAGCTGCAGCCAGTGTTTTGGCGCCTCAAAAAATAACCCTCATTAGCTCGCCTGCGCCTGTACGGTGCGCTGGTGATCGGGTCGCGATGTTTAAGAAGGCGAGGAGATGCAATTTTAGGCGGAGGAACGACTCCGAAGATGAGGAGAAAGACGAGCTCCAGAACGAGCTCCAGCCCCAGAGcgctgagcagcagcagcagcagcagcagcaccagccGCCGGCGCCGTGCGGGCCCGGAGCGGGGGGCGACTCTGGCACAGCCAGCGCCGACAGCAACGCGGTCAACAACCACGGAAACGGCTTTCAGTCCAGCGCTTTAAAGGCGGCcagagagaagaaaaggaagaaagaggGAAAGGAGGAGCCCAAAGCCAGCCTGCTCAGCTTTAACGACGAAGAAGaggaaACTGAAGTTTTCAGAGTCAAGAAGTCCAACCACAGCAAGAAGATTGTTAAGCAACTCAAGAAGGAATACAGAGAGGAGAAAATAGTCCATGTGGTGCAGGACGTCACCACGCGTCTTGATGGTGCATCTGGTCCAGCAATAGTCAAAGATGAGCCAGTGGACAGCAGAGGCAGCAGTGAGCAGGGTGAAGGTGAGATGGAGGTGGACAGTAATGATGAACcagaagatgagagtgaagcaAAGCCCGGTGGTGGAGGAGCTTTCTCCGAGACCCTGTCTGCTCTCAGCTCCCTCAGACCAGGTGAGATCCCAGATGCAGCCTTCATTCACGCTGCACGTAAACGGCGGCAGATGGCTCGTGAGCTTGGAGGAGATGCCCCATTGGTGGAGGCAGAGGTAGCAAATAAACGCCTGGTTCATGAAGATGAGCAGGGTGGCAGTGATGACGAAGATGAGAAGAGGATAGTTTTCAGTGGCGTCAAGCAGAAGAGCCAGCGGCAGAAAATAGCAGAGGAGATTGGTATTGAGGGCAGTGATGATGAGGCTCTGGACACTGAAGGTAATGATGAAGAAGTTAGTCGCTGGGAGCAGGAGCAAATTAGGAAGGGCATTAGCATCCCACAGGTCCAAACCAGCCAACCTGAAGACGCAAACATGTACTACCAAGCTGGATATGAGGGCCAGCCATATGGAGTGTCCTACAACATGCCTTATGGATATGCTGCAGTTGGGGCAGACAGCAGCAAGCCTGTGAAAGCTGAGGGTCCAGTGCCCTACCCTATACCTAGCAGCAGCCTTACCCCTATCACTACAGCTCTGGTAAAGAAACGTCTCACAGACAGGCTGAGCTCTATGCGCCAGGGCCGCGATGCCAGTGCCCGGCGCTACGAGCAAATCCAGGAGGAGCTGCAGGCCTCCAACAGCAGCATCCTGCAGCTGGAGGACTCCTCGCAGCACACCGCAGAGCAGTACAAATTCCTGCAAGAAATGCGAGGGTATGTCCGAGACTTGCTTGAGTGTTTCAGTGAAAAGGTGCCTGCTGTTCTGGAGCTGGAAGCTGCCATGCACCAGTTACTAAGGCAACGGGCGGCACGGCGTGTCCAGAGAAGACAGGATGATATTAAAGATGAATCGGCGGAGTTTTCAAGCCTTTCAAATAAAGCTGTTATGGCCCCTAATCTGGACCCTTTCGGTCGAGACCGTGCGGCATACCAGGAACTTGGCAAGCAGAGGAGGGTAGCAGAACGTGAGGCCAGGAGAACACGCCGCAGACAGGCTCGAGAACAGAGTGGGAAAAGAGCTGAACACAAAGAGGGACTGTCCAGTGATGATGAGGAGACCTCCACTGACATTAACAGCTTTAACCTGGAGAGAGATCGCGTTCTGAAAGAATCAAAGAAGGTGTTTGAGGACGTTGTAGAAGACTTTCATTCTTTGGATTGCATCAAAAGTCGATTCGAGGTGTGGAGGAAGCTTTACTTTACATGCTACAGAGACGCTTACATTGGCCTGTGTCTTCCCAAACTTTTTAACCCCCTGATCCGGCTGCAGCTCATCCCGTGGTCTCCTCTGGAGGATGAATGTCCAAACTTTGAGTACATGCTGTGGTTTGAGTCTTTGCTGTTCTACGGCTGTGAGGAGCTGACCAACACACGTGAAGAGGACATTGACATTGGCCTTCTGCCTGCCATTGTTGAGCGGGTCCTCCCCAAGCTTGCAGTGCTGGCGGAGCAGGTGTGGGATCCGCTGTCACGTCGTGAGACCTCCCGGCTAGTGGCCTTTATGATGCGGTTGATAAAAGGCTACCCCACAGTACTGCACGGAGAGAACCGCAACACGCAGGAGCTGCTGAGGACTGTTGTCATGCGGATAAGACGCTCTCTAGATGAAGACATCTTCATGCCTCTGTTTCCTAAAAAtgttttaGAAAACAAGAACTCCGGTCCATACTTATTTTCCCAGAGACAGTTCTGGACCTGTGTGAAGCTGCTTGGGAACATCCTACAGTGGGATGGCATCCTGTCTCAGAGTACTCTGAAGGAGCTTGCTGTTGACAGCACACTAAATCGCTACATTCTTTCAGCGCTGCAGATGGCAGACTTTGGGGAAGACAGCGTGGAGAAATGCCGTAGGGTGGTGGAGTATTTCCCTGTGCATTGGTTCAGCACTCTAAAGGGCCAGCAGACTCTGCCTCAGATGGAGAACCTATGTCGGTATATGAAGCACCTGGCCACCTCGCTGTACCGATCCAGCCTAACAGCCTCTGATGTGGACAAGAGGAATGTCCGGGAGCACATTAAGGAGGTGGTGAGGCTTCTGGGTCGCCTCAATGCACTTGATCATGTGATCACTGTTGCATCAGAACATGGAATTAAAGACATTAAGACACTGCTGGAGACTAAATGAAGGACAGCCCCATGGAGCAATGACTCAGAGACTGTTGCTGTCTGCTCAGTGTATATATTGTGGATACTGTACATGTTTATGGTTTGGGAGTTTGTTTTTGCCGTTTTCCCCCCTTGCTGGGGTACACTGTTGTTTAGATGGGTCTACCTTTTAAAATTTACACCGGATTGAAATGACAGTGCTTTGTGACATTTGGCTATAATCTACAgtagttttttattgtttctgtttCTAAAATATGATTGAGGTCATACAATTGCTGGTGCTGGTCCATTCCAGATGGCTGGTCCAGTGTTCAGAAGCACCGGTCACTGTGTGCCGAGCTGGGACTTTACTGATGTCTTTAAAACCTCTGCTCAGACTGCCCAAGTCCTCTTTGTGACACTTGgatctgcttctgcttctggaACATTTTCTTCACCATTTACAGCTTGCCCATGTTCCGCTTCAAAAGACCCAGATTGAGCTTTGTTGATGGCCACTGACTGCAGCaacctttttttccctttatgaACTGTGGCTCTCAGGCTGCAGTATGACACAGCACTTCCTCCTCTTTGCTTATGTGCCATACATAAGTCTTAGCAAAGTTATTCAGATGTGACTTCACTAAAGAATGCAATAATAGACATTCTGtgcattttaattgtttttttcatggAGATGTTTTAATAACCTGAATAAAGGTCTGCCAGTTGAAGCTTTGGTTGAA

Function

symbol description
paxbp1 Predicted to enable DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human PAXBP1 (PAX3 and PAX7 binding protein 1).

NR:

description
PREDICTED: PAX3- and PAX7-binding protein 1

GO: NA

KEGG:

id description
K13211 GCFC; GC-rich sequence DNA-binding factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252466.3 True 3591 mRNA 0.51 19 25508722 25522398

Neighbor

gene id symbol gene type direction distance location
LOC103044157 slc7a1,LOC103044157,LOC108410642,LOC107592154,LOC107720662,LOC107685000,LOC108277031 coding downstream 1857 25480188 ~ 25506865 (-)
LOC103043328 LOC108444414 coding downstream 145399 25359232 ~ 25363323 (-)
vps36 vps36,LOC107720661,LOC107685004,LOC107701118 coding downstream 187025 25304448 ~ 25321697 (-)
LOC103039311 LOC103039311 coding downstream 330275 25170423 ~ 25178447 (-)
kiaa1024l NA coding downstream 456590 25046214 ~ 25052132 (-)
ltn1 ltn1 coding upstream 1230494 26752892 ~ 26782177 (-)
LOC103046333 slc25a1a,LOC108424536,LOC107586170,LOC107708615,LOC107720673,LOC107554324,LOC108276564,LOC105890537 coding upstream 1271996 26794394 ~ 26799253 (-)
LOC103031551 NA coding upstream 1288632 26811030 ~ 26815128 (-)
LOC103023750 LOC108424450 coding upstream 1300341 26822739 ~ 26825856 (-)
LOC103027750 zgc:103508,cssa04h17orf49,LOC108424543,LOC107720679,LOC107742347,LOC107702799 coding upstream 1386813 26909211 ~ 26912823 (-)
G179129 NA non-coding downstream 389 25507546 ~ 25508333 (-)
G179106 NA non-coding downstream 41139 25467200 ~ 25467583 (-)
G179085 stoml3b,LOC103043838,LOC108444492,LOC103140675,LOC103475509,LOC102232466,LOC101162729,LOC102781741,LOC107087919,LOC104923823 non-coding downstream 149783 25338797 ~ 25358939 (-)
G179057 tpte,tpte2,LOC108410538,LOC108276937,LOC107718790,LOC107701101,LOC107685006 non-coding downstream 191458 25260519 ~ 25317264 (-)
G179075 LOC108444483 non-coding downstream 217783 25289115 ~ 25290939 (-)
G179126 NA non-coding upstream 62058 25584456 ~ 25671080 (-)
G179178 NA non-coding upstream 356251 25878649 ~ 25878946 (-)
G179193 NA non-coding upstream 532846 26055244 ~ 26056126 (-)
G179288 NA non-coding upstream 613135 26135533 ~ 26188341 (-)
G179297 NA non-coding upstream 835585 26357983 ~ 26358360 (-)
LOC103043022 LOC108410630,LOC107556853 other downstream 36478 25363932 ~ 25472244 (-)
thsd1 thsd1 other downstream 205639 25293675 ~ 25303083 (-)
LOC103025094 zgc:171929,LOC107690845,LOC107575147,LOC107671611,LOC105905449 other downstream 301336 25203325 ~ 25207386 (-)
G178982 hint1,LOC107665476 other downstream 374566 25130982 ~ 25134156 (-)
sh2d4a sh2d4a other downstream 2551496 22945161 ~ 22957226 (-)
LOC103047293 LOC108410718,LOC106581537 other upstream 133857 25656255 ~ 25864474 (-)
G179569 NA other upstream 1917833 27440231 ~ 27443316 (-)
ift46 ift46 other upstream 1947688 27470086 ~ 27477978 (-)
LOC103038646 zgc:194989,hist2h2l,LOC107719244,LOC107667924,LOC107574861,LOC108277172,LOC105900366,LOC103356012 other upstream 2000733 27523131 ~ 27524135 (-)
G179583 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 2001930 27524328 ~ 27525388 (-)

Expression


Co-expression Network