LOC103044955 (slc43a2b,LOC103044955,LOC108410672,LOC108277386,LOC107701113,LOC107720664,LOC107684998)


Basic Information

Item Value
gene id LOC103044955
gene name slc43a2b,LOC103044955,LOC108410672,LOC108277386,LOC107701113,LOC107720664,LOC107684998
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 25557064 ~ 25586563 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252468.3
TCTTACTGAGtgacgggagagagagagaggcggagAAGGacggtgtgtgtgagtgtgtgagagagtttaACTTCACTGTAACATCCTACACACGCTCGAGCACTGCGTTTCTCACAGGAAGACCATCTCAGTCCGTGTGTGATCACCTGTCCTCTCATAGTCCTCTCTCCTGTTCAGCACAGCCATGGCTCCGACCTTGGCCACAGCCTTTGCCCGCCGCTGGTGGATGGCGGTGACAGCCATCATTGAGAACCTGCTGttctctgctgtgctgctgggCTGGGGCTCCCTGCTCATCATGCTCAAATCTGAGGGCTTTTACTCCTACCTCTGCACAGACCATGGTAACAGCTCCGCCTTCAACGTCTCCCTGCCGCCTGTGGCTTCATCAGCAGGAGGGGATGAAGATTACCAGTATGAAGACCAGTATCCGCAGGTGTCTCATGATGATGGAGTGGAAGTGGTTCCTCTGAAGTCGGTGGAACAGGTTATCCGTATGAACGGCTGGCTGATCTGTAAAGAACAGGATGAGATACTGAACTTGGCCTTCACCATCGGCTCCTGCTTCTTGAGCGCCATTGCGCTGCCCCTGGGAATCGTCATGGACAAATATGGCCCACGCAAACTCCGTCTGACTGGCAGTGCCTGTTTTGGCCTGTCGTGCCTGCTTATCGCCTATGGAGCCAGCAACCCCAATGAACTTTCTGTCCTCATCTTTGTTGCTTTGATCTTTAATGGCTTTGGAGGAATGTGTATGACCTTCACATCCCTTACgCTGCCTAACATGTTTGGAGACCTGCGCGCCACCTTCATTTCTCTCATGATCGGCTCCTACGCGTCTTCCGCCGTCACTTTCCCTGGAGTTAAGGTGATCTATGACTTGGGAGTGACCTTTATTGCCATCCTCGTCATCTGGGCTGCGTGCGCTGGCCTCGTTTTCCTCAACTGCTTCCTCAACTGGCCCTCGGAGGCCTTCCCTGGACCTGAGGACATGGACTACACAGTGAAGATCAAGTTCAGCTGGCTGGGCTTCGACCACAAGATCACCGGGAAACAGTTCTATCAGCAGGTGACGACAGTGGGTAAACGACTAAGCGCAGGCAACTCTCTCAAGCAGAAGGAGCTGGCCACCAGCGAGGGCCACAATCTCTGCCTCTCCACCATGGACCTGGAGGTGAAGTGCAAGGAAAAAGGAGAATCTCAGTCCTTCTCTCAGAGCATCTTCAGTCCTCTGTTCCTGCTCAGTCTGGTCACTATGTGCATAACTCAGCTGCGACTCATCTTCTACATGGGAGCGATGAACAGCATCTTGGAGTCCATGAGTGGCGGAGATCTTAatacagTGAGCCTGTACTCCTCTATTTTTGGTgtgatgcagctgctctgtCTGCTGACCACTCCAGTTATTGGTCAGATCATGGACTGGAAGCTGAAGGAATGTGATGATGGAGATTCAGATGAAAAAGATGCCATCAAAGACCAGCCCCAGCCCAAGcgaagagacagacagatccAGAAGATTACCAATGCTACACGAGCCTTCTTCCTCACCAACCTCATGCTTGTTGGATTTGGAATCACCTGCCTCATCCCAATCCTCGAGCTGCAGCTGCTCTCCTTTGTTCTGCACACCATGGTCCGAGGTTTCATCCACTCAGCTGTTGGAGGACTGTACGCTGCTGTatatCCATCAGGCCAGTTCGGGAGCCTGACAGGGATGCAGTCTCTGGTTAGTGCCCTCTTTGCCCTGCTCCAACAACCCCTCTTCATGGCCATGATGGGGCCACTGCAGGGAGATCCACTCTGGGTGGACGTGGGCCTGCTAGTCATGAGCATGCTGGGCTTCCTGCTGCCTCTCTATCTGCTGTGCTTCCGCAGAACCCTCCACAAGAGGAGGAAGCAGAAAGAAAACGACGCCAAGATCTACATCAAAATCAACGGCAGCGACAAACCCGAGGCTTTTGTGTAGATCCAGGCCACACGGATCCGGGAAGACAACAAAAGACACGAGAACGGATGAAAGAAACTGCCATTATTTAAAtgacttataaacacacacgatataacacacacatacaaagatGTTTGAGTTTTTTCCAATCTCTGAGAGACTCAACAGACTGATAACGTTGTCATGGAAACTGACAACTGCCATGCCATCAATGTGGACAGAAGAGAAgggcaaaaatggaaaaattaacAGAACCTCAAACCTCAgtttaaaataagaaagaagTAGAATTAGGGAATTAGTttgtgtagctgtgtgtgtgtgtctatttcCTGTGATATTTACAATTCACTGTTCCGAATGTGCCTGAGAAGCACGTATTTGCCTCCAGTGTTCAGCATGGTTGAGCTGCCTGGCTCTTTCTTTTTAGAGCCTTCTTACACAAATTTCTTCCCAGTTTATCTGAGACAATTAAAACACTCACCACTCActagaacccccccccccctcccccttatCATTTGCACTGGTTTCCCCAACACCAGGATTGTAAAGACAAGCGCATGCCTCCTTTGATTCATGTGAAGTCACCCGCTGTCTTcatctacccaccaagagagagcatggccagttgtgctctcttgggTTCCAGATGTGATGGGATGGGATCTCAGCCAATCAGTGCCTTTCTATTCCGTTACCTTTTAAAGTGCCGCAGCCCTGTGTAATGATGTGATGTCACCCAAACGGGTCGTGTTTTTAAACTTATTACCATCATTTTTAACTATGGTAAGAGTTTTGTATTTGCACACGTTTCTAAGCATGCAAACATTGCAGGCATTAAGCTAAGCTACATCAGTAGCTTACATCAGTGCCTTTAGTGCTGCTAGCCATATTaagcaataacaataataatggtATTTCAGCAACATTAGCCAAGAAGTAAAAGCTCCAACCAACCCGAAGCCAAGAGCCTTAAGCCTCATGTTTTAGGCACACAATTCGTGGCATTTGTCTCCCCCTAGgggtaaaagagagaaatacagaactGTGCATACAGCATATGGTCATGCAAAGATGCCATGATCACAAAGTCTCTGGAGTGTTCTTTATgtactgtttaaatatatatataaaataaatattattatggtgcacataatttattttaggtttattCATATGTTGAGTCTTGCATAAAGTCCTTCAATAGTAATGTCTTCATATGTGATCTTAAAATAACGAATAGTAACAttcaataattttaaaatgtttgcacAGTGACTGATATGCCGAAAGTCATGAGACTCGTTGACATGACCACACTGGCCAGTATGTAACCTCGCTAACCAGATACCACCTCACACGTTAAACAaatgtgggcattcccaagtcATTCCATGAggtaaaacttactgaacaatTTGTATACTGCTGTGCCATGACTTTTGTGTTGTGCACAGGTGTGTAAAGGTAGATTTGTTTATGTTCCTAACGCAGAGAAATGTACACGTTGCCCTAAAGGTGGCTTTACCTAAAGGTTGTGAAGTTTGTATCTCTTTGGCCCACATTTCATGGGAATTCCAGCACTTTTACAACACTGTTCCCGATCCTctgcttcgtttttttttttttaagaccgCATACTAAAGCCATTTTCTGTGCATATCACTCATGTCATCAAAGTGCCTTTGCCTTTTGTAAAACATAATGTTAAGGATTCCTGTGACTAATAGTTGGTTTAAaatatgttgtatttatttgtattgtttcttAATTTGGACAACATATCCTATATGTGAGGAATCACACTTTATATAACTGGCTGTTATTTGATAACCATTGGCTGGTTGGTTCTGCGTTCTAGGTATTGCAGTTTTGTTCTGGTAGGCATTATTACTACTGAGAAATGTgagaaaatatgaataaatgtgaTGTTCCTCA

Function

symbol description
slc43a2b Predicted to enable L-amino acid transmembrane transporter activity and neutral amino acid transmembrane transporter activity. Predicted to be involved in neutral amino acid transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in epidermis; myotome; retinal inner nuclear layer; and yolk syncytial layer. Orthologous to human SLC43A2 (solute carrier family 43 member 2).

NR:

description
large neutral amino acids transporter small subunit 4-like

GO:

id name namespace
GO:0015807 L-amino acid transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015179 L-amino acid transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252468.3 True 3895 mRNA 0.46 14 25557064 25586563

Neighbor

gene id symbol gene type direction distance location
LOC103025709 NA coding upstream 6968 25526543 ~ 25550096 (+)
LOC103043838 stoml3b,LOC103043838,LOC108444492,LOC107556874,LOC108277281,LOC102781741,LOC107685018,LOC107720596,LOC101474847 coding upstream 198454 25339588 ~ 25358610 (+)
proser1 proser1,LOC107556855 coding upstream 220468 25323348 ~ 25336596 (+)
LOC103040246 LOC108444483 coding upstream 264171 25288607 ~ 25292893 (+)
vasp LOC108423768,LOC107575450 coding upstream 321242 25216130 ~ 25235822 (+)
LOC103045464 pitpnab,pitpna,LOC103045464,LOC108276543,LOC105890453,LOC108237022,LOC108410689,LOC107386993 coding downstream 3260 25589823 ~ 25617224 (+)
LOC103045760 LOC108410697 coding downstream 38793 25625356 ~ 25643316 (+)
LOC103021428 LOC108410728,LOC108277327 coding downstream 495232 26081795 ~ 26691002 (+)
nle1 nle1,LOC107720672,LOC107708614 coding downstream 1196485 26783048 ~ 26793500 (+)
LOC103025645 LOC108424540 coding downstream 1294086 26880649 ~ 26896187 (+)
G179034 NA non-coding upstream 75873 25459607 ~ 25481191 (+)
G179028 NA non-coding upstream 189728 25364307 ~ 25367336 (+)
G179007 NA non-coding upstream 239761 25260514 ~ 25317303 (+)
LOC111195080 tpte2,LOC108410538,LOC108276937,LOC107718790,LOC107701101,LOC107685006 non-coding upstream 297423 25257793 ~ 25259641 (+)
G179014 NA non-coding upstream 303515 25252524 ~ 25253549 (+)
G179173 NA non-coding downstream 185100 25771663 ~ 25771948 (+)
G179177 NA non-coding downstream 292080 25878643 ~ 25878855 (+)
G179183 NA non-coding downstream 378080 25964643 ~ 25968792 (+)
G179239 NA non-coding downstream 814445 26401008 ~ 26401267 (+)
G179320 slc25a1a,LOC108424536,LOC107586170,LOC107708615,LOC107720673,LOC107554324,LOC108276564,LOC105890537 non-coding downstream 1207840 26794403 ~ 26799202 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other upstream 299595 25244161 ~ 25257469 (+)
LOC103032894 LOC108424565 other upstream 1102442 24447792 ~ 24454622 (+)
G178485 NA other upstream 2592075 22963447 ~ 22964989 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other upstream 2847507 22689001 ~ 22709557 (+)
G178352 NA other upstream 3010934 22544640 ~ 22546130 (+)
LOC103024073 LOC108424537 other downstream 1244074 26830637 ~ 26879083 (+)
rnasek rnasek,LOC107554319 other downstream 1327187 26913750 ~ 26916344 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 1937739 27524302 ~ 27525441 (+)
G180235 erg other downstream 5552781 31139344 ~ 31151095 (+)
G180266 NA other downstream 5846635 31433198 ~ 31433909 (+)

Expression


Co-expression Network