LOC103045065 (lpar1,LOC107554848,LOC107723319)


Basic Information

Item Value
gene id LOC103045065
gene name lpar1,LOC107554848,LOC107723319
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 21389227 ~ 21423245 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254077.3
AAAATGAGTCCAGCTGCTGCATCTACTGCTCTCACCTCTGTGGATGGAAGATGAATAAACCGCACTATTCTGGACTTTGCGCCACAAAACGAGGCTTTTCTTCCCATTCTTGACACATTTTTGCCCTGTTTTCTCTTCAGAGACCCGCCTTGCTTTTGCTGTCTGTTGCGTTTTGGAGGAAAATAACTTTTTTGGGGAGTTATTTGCGAGACTAGCCTGAGGAAAGCTGTGGTAGAAGCGCTCGAGACaAATTTCTAACCTTCAAGATGGAAGAACAGTGCTACTTCAACGAGACCATCGCCTTCTTTTACAATAAAAGTGGGAAGTACCTGGCCACTGAGTGGAATACAGTCAGCAAGCTGGTGATGGGACTTGGGATTACAGTATGTATTTTCATCATGCTGGCTAACCTGCTGGTGATGGTAGCCATATACATCAACCGCCGCTTCCATTTCCCCATCTATTATCTGATGGCGAACCTAGCAGCAGCGGACTTTTTCGCCGGACTGGCTTATTTCTATTTGATGTTTAACACTGGTCCCAATACGCGGCGGCTAACCGTTAGCACGTGGCTGCTCCGCCAGGGCCTCATTGACACTAGCCTAACAGCCTCGGTGGCTAATCTGCTGGCCATCGCCATCGAGCGCCACATAACGGTCTTCCGCATGCAGCTCCACACCCGCATGAGCAACCGGCGTGTGGTGGTCGTCATCATGATCATCTGGACCATGTCCATCATCATGGGAGCCATCCCCAGCGTGGGCTGGAACTGCATCTGTGCCATCGAGAGCTGCTCCAGCATGGCGCCACTCTACAGCAACTCGTACCTCGTCTTCTGGGCCATCTTCAACCTGGTGACCTTCGTGGTCATGGTGGTCCTGTACGCTCACATATTCATGTACGTCCGCCAGCGTACCATGAGGATGTCGCGCCACAGCTCGGGCCAGCGGAGGAACAGGGACACCATGATGAGCTTGCTGAAGACGGTGGTGATTGTACTAGGTGCCTTCATCGTGTGTTGGACTCCTGGCTTAGTGCTCCTGTTACTGGACGTTTTCTGCAACGATTGTAATGTTCTGGCTTACGAGAAGTTCTTCCTCCTCCTAGCAGAGTTTAACTCGGCCATGAACCCCATCATTTACTCGTACCGGGACAAGGAGATGAGCGTGACGTTCAAGCAGATCCTGTGCTGCCAGCGGCAGGAGAACATTAACGGTACGACGGAGGGGTCCGACCGCTCGGCTTCGTCCTTCAACCACACGGTCCTCAACTCGCCGCACAATAACGACCACTCAGTGGTCTGAAACAAGGGAATGAATGTGGGTGCAGAGTTGGCACTATCAGGATCAAACCCTGGAGAGAGAACTGGAGAGAAGCCCCTCGCCCAGTGGAAGCATTTGCTTCAGCAGTGACTTCACGTTTCGTTTCGTTGTTTTGGGCTCGTGGAgggatgtgtttgtttttatttttgtacgtGATCATTGTGCTATATTAAGTATTTAAGGACTAATCTGCATTGCGAGGGTCCAGCCAGTATACCAcacatttcaacacatttcttCTCTGATTGCTTTTGCATTGGATTCGCAATGCAAggagcaggagaggagcccTAATGAGTATTTCTGAATCtgattattttatatcataGGGGTCAACCTTTCAGATCTAAAGTAAATCTGGATTAAATTGTTGAGATCTGTacaaataagtgttttttttttctttttacaaaaagTATTATTTCCATTTAAcgattttaattatgttttgttttttgcactaCAGAGATAAGCAGTGTACTCTCGGGACCACTGATGAACAGCAACAGTTAAAGTCGATGTTATGTCTATATATGAAGTACACGGCATGATGAAATATGGCTGTCGTGTGCTGTATCACAATATTACAGTAGGTTTGTCACAAACCCCCACTTTGCACTGTTGCTACATATAGTAGAGTTGAAGCTCATACTCAGCAATGGTGTACTTAATGAGTCAATATGTGCAGCAGAAAGGAGAGTTTTAGTCCAGCTAGTCTGTGCCTTAGGCCCTGTCCACACATATCCAGATATTGTTCAGATTAGAATACAGTATGTAAAGGGGAGAGGTGCGAAACATGTACTAAATGCGAGCCATCAACCGTGTGCACCACACAGCTTGATTAAGGGCATGTCAccatgtctttgctatcataacgacgggaaaagtacaccttgcacggctctaaacatgcaaaatgcatgtactaattctctttaatGACTAgtaaaaagtaagtaaagtaattTGGACATaacataaatgaaataaaccagtcactTGAcagtccctttaagagccaggtgtctTTGGCGTATTGGTATGTTAACGGTGCAGTtcttctttgcttttttataagacgaaactgacctgcttgttgaGTCATTTATGGGAgcaatattctgttttttgttgatgtaaaagttgggtttgtgcactgcagcaTATCCTAGCGTGAGTAACAAGCGGGGGTGTATACGTGTTGAGCACACCTGCATTGCCAAGGTAGCAATGGACGTCTGACGGTTGACTGTAGTCAGGGTTTAGATCattcagtggagcacctgtgtttttcattgtaaagatagcaatacgccagacaTTTTGCTATTGAAACGAAGCAGACAGACACAAGGGAGTGAAAATAGTCAATAACTGTTGACAGGTCAGATAAAAGATTAGATAATctctcttattaaaaaaaaatattcatatacGTATGTGTGTGGACAGGGCCTAACTTGAATCACGTGAAGCTTAAATGGTGTTTTATTCTAGCCAACCACATTAAAGAAAGAAACCAGAAGCCAACATTTTATGCTTTGCTGTGATACTGATAATGGTGTTAGAAGTTTTTAGAAtttacaaaaacatttcatatattACAGATATTTGAGATGTTTTGAACAATATTACCTTTATCAGTTTATTCCAGCACAAACATGGACCACGTACACACACTTGAGCCATTTTTAGGGTCCAAGTCGAGAACTGTTAGCAGGTTAGAGAACCACAAGTGGCCTGTAGATTATATAGGCCATTCCTATGTAATTCTGATAACTAGGGAAGGGATTTTGGATTtcttgagtgagtgagtgaataagtgagtgagtgagcgagtgagtgagtgagagagtgaatgcCCATGTTTCATTGATGTGAATGACACACACTGCTAACCTTCGTAACTCAgagcatatatacagtactcaGAAAGCTTGTAATAACAGTATGGATTGTTGATAAGAAATAGAGTAGGCTTCAGAACGGGTCAAGTGTGTacatctatgtgtgtgtgtgtgtgtgtgtgaatgcattataaacacAGTCATATCTGAATATTATGTCCTATCTCCTTTATTTTTCACTCTACTCTGtccattttatcagctccactgagcgcATATAAACactttgttttatataatgaGACACATCTTCATAATTTATTATCCTtctttttaccctgttcttcattATTCAGGACCCACTGATCTGTTGAGCTGTGTatacgagtggatcagatataGCAGCAGTGctggtggagtttttaaacacctcagtgtcactactGAACTGAGAACAGTCCACCTACTATATCAGAGCTTCTGCCTCTGACTTTACTACacctacaaggtggagcagctatagGCAGGAGTGTCTtataggcccaatcccatttttaATTTGTGGCCCTACCCCTTGATTTTGAGTGTAAACTTTAGTTTAGACTCGAGTTACAAGAGGAAGGGGTGCAAACCTTCCTCTAAGAACTGGGACAACCCTTTAAGAACTTGTAGGTGACCCTGCCCAGCCGATGTGAAGATAGCAGTGGAGCAccaaagttcagcaacctagttGCTGCTCATTTTAGGGCATCATGTGTCTTT

Function

symbol description
lpar1 Enables lysophosphatidic acid receptor activity. Acts upstream of or within cartilage development; hemangioblast cell differentiation; and vasculature development. Predicted to be located in cell surface; endosome; and membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and plasma membrane. Is expressed in several structures, including cardiovascular system; mesoderm; musculature system; nervous system; and pleuroperitoneal region. Orthologous to human LPAR1 (lysophosphatidic acid receptor 1).

NR:

description
lysophosphatidic acid receptor 1-A

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0001525 angiogenesis biological_process
GO:0001946 lymphangiogenesis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0070915 lysophosphatidic acid receptor activity molecular_function

KEGG:

id description
K04289 LPAR1, EDG2; lysophosphatidic acid receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254077.3 True 3931 mRNA 0.44 3 21389227 21423245

Neighbor

gene id symbol gene type direction distance location
rassf6 rassf6 coding downstream 76290 21297384 ~ 21312937 (-)
tmem267 tmem267,si:busm1-79m10.4,LOC107653487,LOC107702605,LOC107750222,LOC107756535,LOC107554236 coding downstream 104530 21274520 ~ 21284697 (-)
sigmar1 sigmar1,LOC107573076,LOC107653128 coding downstream 964457 20421350 ~ 20424770 (-)
katnal2 katnal2,LOC107573073,LOC102797751,LOC104955398 coding downstream 968409 20408361 ~ 20420818 (-)
LOC103029139 NA coding downstream 1160933 20219002 ~ 20228294 (-)
epha5 epha5,LOC108428864,LOC107702602 coding upstream 121972 21545217 ~ 21665726 (-)
LOC111194991 NA coding upstream 499085 21922330 ~ 21923015 (-)
plppr1 plppr1,LOC107653496,LOC107750956,LOC107702599,LOC107710008,LOC106568589 coding upstream 551262 21974507 ~ 22038937 (-)
snx30 snx30,LOC107569385 coding upstream 920211 22343456 ~ 22376932 (-)
enoph1 enoph1,LOC107702573,LOC107715850,LOC102782295 coding upstream 1055468 22478713 ~ 22484769 (-)
G178156 NA non-coding downstream 67655 21268296 ~ 21321572 (-)
G178157 NA non-coding downstream 124213 21256649 ~ 21265014 (-)
G178134 NA non-coding downstream 546853 20842047 ~ 20842374 (-)
G178096 NA non-coding downstream 671162 20717753 ~ 20718065 (-)
G178090 NA non-coding downstream 773216 20615802 ~ 20616011 (-)
G178195 NA non-coding upstream 51985 21475230 ~ 21475642 (-)
G178201 NA non-coding upstream 92343 21515588 ~ 21515985 (-)
G178236 NA non-coding upstream 392882 21816127 ~ 21816402 (-)
G178237 NA non-coding upstream 409496 21832741 ~ 21832989 (-)
G178251 NA non-coding upstream 502247 21925492 ~ 21927360 (-)
G178173 NA other downstream 93394 21291522 ~ 21295833 (-)
LOC111194984 sh2d4a other downstream 1649914 19738649 ~ 19739313 (-)
LOC103035567 LOC103035567,LOC108425166 other downstream 2261104 19119786 ~ 19128123 (-)
G177704 NA other downstream 2297081 19091146 ~ 19092146 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other downstream 2454627 18887028 ~ 18934600 (-)
G178267 grin3a,LOC107710005,LOC107750958 other upstream 510274 21933519 ~ 21933831 (-)
G178426 NA other upstream 1032252 22455497 ~ 22456779 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other upstream 1078073 22501318 ~ 22509783 (-)
G178450 NA other upstream 1248887 22672132 ~ 22672683 (-)
LOC111195067 NA other upstream 1512245 22935490 ~ 22941664 (-)

Expression


Co-expression Network