epha5 (epha5,LOC108428864,LOC107702602)


Basic Information

Item Value
gene id epha5
gene name epha5,LOC108428864,LOC107702602
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 21545217 ~ 21665726 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254078.3
TGGGTGAAGCGCTCAGTCTCCGGTAGCCGCGCGCTCGACCGACCGCCTTCAGATGCGCCTCAGTTTCAGCACAGCGAGCCGCTCACACGCTAATGCCTCCCGCCGCCGCGGCGCCCGCGCGCAGGATTTAGCGCCGAACACACGCGAGTCTGAGCCGGTTAGAGTGTGAGACTCAGGCAGCGGAGCGAGCATGCGGAGTTACAGCGGACCCGTCTGGGTGAAAGTATGGATTCTGGTCCTCAGCTTGGCGGCGTTGGAGACGCGGAGTATTCCCAGCAACGAGGTGAACTTGCTGGACTCACGCTCTGTAATGGGTGACCTAGGATGGATCGCCTACCCAAAGAACGGGTGGGAAGAAATCGGAGAGGTGGACGAAAACTACGCCCCCATTCACACCTATCAGGTGTGCAAGGTGATGGAGCACAACCAGAACAACTGGCTGCAGACGAACTGGATCCTAAACGAAGGGGCTCAGAGGGTGTTTGTGGAGCTGAAGTTCACCCTGAGGGACTGTAACAGCCTGCCGGGCGGACTGGGCACCTGCAAAGAGACCTTCAACGTCTACTACTACGAGTCCAACGACGAGGACGGCAGGAACGTACACGAGAGCCAGTACACCAAGATCGACACCATCGCGGCGGACGAGAGCTTTACGGAGCTGGACCTGGGGGACAGGGTGATGAAGCTGAACACCGAGGTCAGGGACGTGGGGCCCCTGACCAAGAAAGGCTTCTACCTGGCCTTCCAGGACCTGGGGGCCTGCATCGCCCTGGTGTCCGTCCGCGTCTTCTACAAAAAGTGCCCCTTCGTGGTGCGGAACCTGGCCCTTTTCCCGGATACTATAACTGGGTCGGACTCCTCGCAGCTCCTGGAGGTGTCGGGGACCTGCGTCAACAACTCGCTGGCCGACGagctacccagaatgcactgcaGCGCGGAGGGGGAATGGTTGGTGCCCATCGGGAGGTGCATGTGCCAGGCAGGCCATGAGGAAGTTAATGGCTCCTGTCAAGTGTGTAAGCCTGGCTTCTACAGATCGGCTCTGCAGACCAGAACCTGCAGCAAGTGTCCTCCTCACAGCTTCACCAAAACCGAGGCCTCCACGGCCTGCCAGTGTGAGCAGGGCTACTACAGGAAGGACACGGACCCCACCAACATGGCCTGCACAAAGCCTCCATCAGCTCCGCGGAACGCCATCTCCAACGTGAACGAGACCAGCGTGTTCCTGGAGTGGAGCGCGCCGGAGGAGACGGGCGGGAGGAAGGACGTGACCTACAGCATCTTGTGCAGGAAGATCAGCGCTGACGAGGGGCATTACGAGCCCTGCGGCAGCCACGTGCGCTACCTGCCCCAGCGCTCAGGCCTCAGGAACTCCTCCGTCATGGTGGTGGATCTGCTGGCCCACACCAACTACACCTTCGAGGTGGAGGCAGTGAACGGCGTGTCGGAGCTGACCAAACCCCTGCGCCAGTACGTTACCCTCAACGTCACCACCAACCAAGCAGCTCCGTCTCCGATCACTGTGGTGAAGAAAGGGAAGACGGCGAAGAACAGCATCGCTGTGTCCTGGCAGGAACCGGACCGGCCCAACGGCATCATCCTGGAGTACGAGATCAAGTACTTTGAAAAGGATCAGGAGACGAGTTACACCATCATTAAGTCGAAGGAGACGGAGGTGGTGGCGGATGGTCTGAAGCCGTCCTCGGCGTACATCTTCCAGATCAGAGCCAGAACCTCTGCTGGATACGGGGGATTCAGCCGACGCTTCGAGTTTGAAACCAGTCCTTACTTGTCTGCCTCCAGAGATCAGGGCCAGGTGCCTGTCATCGCCGTGGCGGTTACTGTGGGGATCATCCTGCTGGCGCTGGTCACCGGCTTCCTGCTCAGCGGCAGGCGCTGCGGGTACAGTAAAGCCAAGCAAGATCCTGAGGAGGAGAAGATGCACTTCCACAATGGGCACATTAAATTCCCAGGAGTGCGAACCTACATTGATCCTCACACCTACGAAGATCCCAACCAGGCCGTCCACGAGTTTGCTAAAGAGATTGATGTCTCCTGCATCACAATAGAGCGTGTGATCGGAGCCGGTGAGTTTGGGGAGGTGTGCAGTGGGCCGCTAAGACTGccgggaaagagagagatcatGGTGGCCATCAAGACCCTGAAGGCAGGCTACACCGAGAAACAGAGGCGGGACTTCCTGGGGGAGGCCAGCATCATGGGCCAGTTCGATCACCCCAACATCATCCACCTGGAGGGTGTGGTCACTAAGAGCAAACCGGTGATGATCATAACAGAGTACATGGAGAACGGATCTCTCGACACCTTTTTAAAGAAGAACGACGGTCAGTTCACGGTGATCCAGCTGGTTGGTATGCTGCGTGGCATCGCCTCGGGAATGCGCTACCTCTCCGACATGGGCTACGTGCACCGCGACCTGGCCGCCCGCAACATCCTGGTCAACAGCAACCTGGTGTGTAAGGTGTCGGACTTCGGCCTGTCTCGAGTGCTGGAGGACGACCCGGAGGCGGCCTACACCACCCGGGGAGGGAAGATCCCCATCAGGTGGACGGCTCCGGAAGCCATCGCGTACAGGAAGTTCACCTCAGCCAGCGACGTGTGGAGCTACGGCATCGTCATGTGGGAAGTGATGTCTTACGGAGAAAGGCCGTACTGGGAAATGAGCAATCAAGACgtgATAAAGGCTGTAGAGGAGAGTTACAGGCTGCCGGGGCCGATGGATTGTCCCACAGCTCTCTACCACCTCATGATGGACTGCTGGCAGAAGGACAGAAACAGCCGACCCAAGTTTGAGGAGATTGTGAGCTTACTGGACAAGCTTATCCGCAACCCCAGCAGCTTAAAAAGCCTCGTCAACTCCTCCAACAGGGTGTCCAATTTATTAGTGGAGCACGGCAGCGTGGAGCTCTGTGTGTTCAGCTCGGTGGGGGAATGGTTAGATGCCATAAAAATGGGTCGATACACCGAGCTTTTCATGGAAAGTGGATACACTTCGCTGGAAGTAGTCACTCAGATGACCTTGGAGGATGTGAGGAGAGTGGGAGTGACGCTGGCTGGGCACCAGAAAAAGATCCTCAACAGCATCCAGGAGATGCGAGTTCAGATGATGAACGCCACCATACCTGTCTGAGGCTGCCCTTAGACCTACTGAAGCGACAGTAGTAGCCTAGCACTTTTTTTACCGTGGACACTTATTTATTGAATGGAACTCTCTTGAACTACTGATGGGAAATGACTTGATGATATTCCTGAGCGACAGTGGGGACGGGCTGACGAATTGGCGGCTGGACGGCTAAAACAAGGGTCTCTGTGTGTAAATGCACAGCTCGTCAGTGTACCGACGGCTGGACGAGTTTTGTAAAAGGACCGAATTGGACGCTAAGCGGATGAGAAGAGTTTGGAAAAGTGTGGCACATCTCCAGGTAGGACCGCTGACCAGGACCACTGTCAGGAGTCTCTGGGCCGAATGTATAGCACTTTTTCGCAGAAACCTCATGCAACAATGTTATTACCTCCAGAAATACAGCAGAACCTACAGCAGAACCTACTTCAGCTGGATACCTTATTCCTCACCACACCACTCTCGGAGCGAAGGTCATGCAGTAAGACTGTGAAAACCATATCATTTGGTTGGAGGAAGAAGCGGCGGCCGTGTATTACAAAGCAATATTAGATTTGAAGCTTGATACgcgtttccttttctttctttctgtctttctttccttcttttctaATGGAAAAAGCAATGGATACGTATGTACAGATTTCATTTTGCACAGCATATGTGTCTTAAGGGGGATATGTGTGAAGTATGACGCTTCAAAACTGTACAGGACTGTACACAGATCAAGCCTAACATTATGAGCACTTCCTTGTTTTCACACTCATTATCAGACTcgttaaattttttttagctcCTGGTGCTGGTAGAAGCGGCTCAGATGCAGCagtactgctggagtttttgaacaccTCCTATCTTACACTCTGTGCAAGGTGCCGCAGtgagatgctcattgctatcttacaccccgtcaacagtctattttcacacctaccACCTGCGTCATTTAAATATCGAAGGCACTTATGAATATATTTACGCTGATAAGCGTGGGGGGctgaaaatgaggtgtgtttaggtcaatttctggcatattgctatcttggcaatggaaaacacatttGCACCACCTGACCGATTTttacaccaacaataaacagaattcaaaattaaatatcattgctgttctTGTAAATGCCCTGCTTGCACAACTTCACAGAAGTGCAGAAGTGCTGCgtcattaaaataccaatttgCCAAAGGCAGAGCACACCTCCCTCTTAAAGGCAATGTGAGGCAAGTGACACgccgattggtttatttcacgctacgcccaaaacacgtcataattaattaagagaattagtacgcacaaggcatacttttcctgtcattatgatagcaaagacacaccgataGGCCCTAAATCAAGATGCACCGTGCacgtaatctacacagatttctctcctgggtgattaaagcacttttgtttatttacagtaagcttagattcactaattt

Function

symbol description
epha5 Predicted to enable GPI-linked ephrin receptor activity; growth factor binding activity; and transmembrane-ephrin receptor activity. Involved in neuron development. Located in several cellular components, including external side of plasma membrane; neuronal cell body; and rough endoplasmic reticulum.

NR:

description
PREDICTED: ephrin type-A receptor 5-like isoform X1

GO: NA

KEGG:

id description
K05106 EPHA5, EHK1, TYRO4; Eph receptor A5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254078.3 True 4606 mRNA 0.53 17 21545217 21665726

Neighbor

gene id symbol gene type direction distance location
LOC103045065 lpar1,LOC107554848,LOC107723319 coding downstream 121972 21389227 ~ 21423245 (-)
rassf6 rassf6 coding downstream 232280 21297384 ~ 21312937 (-)
tmem267 tmem267,si:busm1-79m10.4,LOC107653487,LOC107702605,LOC107750222,LOC107756535,LOC107554236 coding downstream 260520 21274520 ~ 21284697 (-)
sigmar1 sigmar1,LOC107573076,LOC107653128 coding downstream 1120447 20421350 ~ 20424770 (-)
katnal2 katnal2,LOC107573073,LOC102797751,LOC104955398 coding downstream 1124399 20408361 ~ 20420818 (-)
LOC111194991 NA coding upstream 256604 21922330 ~ 21923015 (-)
plppr1 plppr1,LOC107653496,LOC107750956,LOC107702599,LOC107710008,LOC106568589 coding upstream 308781 21974507 ~ 22038937 (-)
snx30 snx30,LOC107569385 coding upstream 677730 22343456 ~ 22376932 (-)
enoph1 enoph1,LOC107702573,LOC107715850,LOC102782295 coding upstream 812987 22478713 ~ 22484769 (-)
trnam-cau_23 NA coding upstream 864882 22530608 ~ 22530679 (-)
G178201 NA non-coding downstream 29232 21515588 ~ 21515985 (-)
G178195 NA non-coding downstream 69575 21475230 ~ 21475642 (-)
G178156 NA non-coding downstream 223645 21268296 ~ 21321572 (-)
G178157 NA non-coding downstream 280203 21256649 ~ 21265014 (-)
G178134 NA non-coding downstream 702843 20842047 ~ 20842374 (-)
G178236 NA non-coding upstream 150401 21816127 ~ 21816402 (-)
G178237 NA non-coding upstream 167015 21832741 ~ 21832989 (-)
G178251 NA non-coding upstream 259766 21925492 ~ 21927360 (-)
G178279 NA non-coding upstream 433593 22099319 ~ 22099518 (-)
G178300 NA non-coding upstream 614619 22280345 ~ 22319081 (-)
G178173 NA other downstream 249384 21291522 ~ 21295833 (-)
LOC111194984 sh2d4a other downstream 1805904 19738649 ~ 19739313 (-)
LOC103035567 LOC103035567,LOC108425166 other downstream 2417094 19119786 ~ 19128123 (-)
G177704 NA other downstream 2453071 19091146 ~ 19092146 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other downstream 2610617 18887028 ~ 18934600 (-)
G178267 grin3a,LOC107710005,LOC107750958 other upstream 267793 21933519 ~ 21933831 (-)
G178426 NA other upstream 789771 22455497 ~ 22456779 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other upstream 835592 22501318 ~ 22509783 (-)
G178450 NA other upstream 1006406 22672132 ~ 22672683 (-)
LOC111195067 NA other upstream 1269764 22935490 ~ 22941664 (-)

Expression


Co-expression Network