plppr1 (plppr1,LOC107653496,LOC107750956,LOC107702599,LOC107710008,LOC106568589)


Basic Information

Item Value
gene id plppr1
gene name plppr1,LOC107653496,LOC107750956,LOC107702599,LOC107710008,LOC106568589
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 21974507 ~ 22038937 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254081.3
CCTCCTCAGCGCCTGAATCAACTCCGCTAGCATCAGGGATAGCCGCCACTAAACGTTAATCACGGAGATATCTAACACCCAGGCAGCGCGGACTGCGGCGCCTCCGCGGCGTGATGGACTAGCCTGACCGACCGGACGCGTCTTTTTCTGCCTTTTTCGCTTTCTTCCATGGGTTTTTACCTTTTATCGGAGTGGAGCCTCCGTCAACTGCGGCGACTATCAACGATAGGACTGTGATCGAGTTGTGGAAATGGCGTCGAACAACACGCAGCGCAGCTATTCCATCATACCATGCTTCATATTTGTGGAGttagtCATCATGGCAGGCACGGTGCTGCTGGCCTACTACTTTGAGTGCACAAACACATTCGGAATCCACGTCCAGGGCTTCTTCTGTAACGATGCAGACCTGATGAAGCCGTACCCCGGAGCAGAGGAGAGCAGCTTCATCCCTCCGCTCGTCCTTTACTGCGTGGTGGCTGCAGTTCCCACCGCCATCATCTTTATTGGGGAGATCTCCATGTACGTAATGAAGTCCACCAGAGAGGCTCTCATTGCCCAGGAGAAAACCATTGTTACTGGGGAGTGCTGCTACCTGAATCCGCTCATTCGCAGGATCATCAGGTTTATTgGTGTCTTCGCGTTTGGCCTGTTTGCGACAGACATCTTTGTGAATGCTGGTCAGGTGGTGACGGGCAATCTGGCTCCCTACTTCCTCACCGTCTGCAAGCCAAATTACACAGGCATGGAATGCCGCTTCAACCACCAGTTCATCTCCAACGGCAACATCTGCACGGGGAACCAGGTGGTGGTGGAGAGAGCCAGGAGATCCTTCCCTTCCAAAGACGCTTCGCTCAGTGTCTACTCCGCTGTCTATGTCACTATGTACATCACAAGCACCATCAAGACGAAGAGCAGTCGTCTGGCTAAGCCCGTGCTGTGCTTGGGGACGCTGTGTGCAGCTTTTCTCACCGGCCTCAACCGCGTGTCCGAGTACCGCAACCACTGCTCGGATGTCATCGCCGGATTCATCCTGGGAAGCTCTGTGGCTCTTTTCCTGGGACTGTGTGTGGTGAATAACTTCAGAGGAGCCCACTCGACTCCTGCTAAACAGAAGACGGAGGATTACCGTGGCCTCCCGGTGATGACGTTTCCCCGCGTGGAGAGTCCTCTTGAGACCCTCAGCGCACAGAACCATTCCGCGTCAATGACTGAGGTCACTTGACTAAGGGGGCAGCACCGGGTCACCTTCGCTTCACCTCAACACTTCTAGGCACAAGATGTTTTTGTACTGTCgcatactgtataaaaaaaagaaaagaaatgaagaaataatAGTATTATGTTGTTCCAAGTTCTAGGCAGatgttttgtacattttgtaaaaGACAGTGCTGTAGCTTCTTCCCCTTCTGTTATCTTCTCTGATCGATCGAACGGTTGGTCACATGTCAGGAGTTCCACCTTTCTTGTCATGTTTTACATCACAAATTATGTCAGATACTGTCTATATATATGATGTTATTGAAATATCGATGTTGTTCTGTGGTATTTGTAcaaaggattttattttatgctgaTTTCTTTTCCTGTAAATTTTTTGAACAAAtcatgtttttgtattatttttgttatctgtataaaacattttgatcAACTTTGCCTGCTGTTTTTCCAGGAATGTTTTTGGTATTCCTATTTTTTGATGtaagatatttaaaagaaaaaaagaaaagaaaagaagacacATTAAGTTGTGGCACATTTGATTTTCCAACGGCATCTTTGGAATGCCATTATTTCAGCATGGAAGTACACAGAACTGTTTGGCAAACTATTCCATTATTTCTGAATTGTATATGATTTCCTCTTTGAGGTTTGCGTTTCTTTTGAAATGCTGCATATATTTTTGATTTGTCTGTCAAATAAATAGTCTGTAGCTGAA

Function

symbol description
plppr1 Predicted to enable lipid phosphatase activity and phosphatidate phosphatase activity. Predicted to be involved in phospholipid dephosphorylation; phospholipid metabolic process; and signal transduction. Predicted to act upstream of or within nervous system development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in nervous system; neural tube; and somite. Orthologous to human PLPPR1 (phospholipid phosphatase related 1).

NR:

description
PREDICTED: lipid phosphate phosphatase-related protein type 1 isoform X2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K19581 LPPR1_2_5; lipid phosphate phosphatase-related protein type 1/2/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254081.3 True 1945 mRNA 0.46 8 21974507 22038937

Neighbor

gene id symbol gene type direction distance location
LOC111194991 NA coding downstream 51492 21922330 ~ 21923015 (-)
epha5 epha5,LOC108428864,LOC107702602 coding downstream 308781 21545217 ~ 21665726 (-)
LOC103045065 lpar1,LOC107554848,LOC107723319 coding downstream 551262 21389227 ~ 21423245 (-)
rassf6 rassf6 coding downstream 661570 21297384 ~ 21312937 (-)
tmem267 tmem267,si:busm1-79m10.4,LOC107653487,LOC107702605,LOC107750222,LOC107756535,LOC107554236 coding downstream 689810 21274520 ~ 21284697 (-)
snx30 snx30,LOC107569385 coding upstream 304519 22343456 ~ 22376932 (-)
enoph1 enoph1,LOC107702573,LOC107715850,LOC102782295 coding upstream 439776 22478713 ~ 22484769 (-)
trnam-cau_23 NA coding upstream 491671 22530608 ~ 22530679 (-)
trnam-cau_24 NA coding upstream 491887 22530824 ~ 22530895 (-)
trnam-cau_25 NA coding upstream 492103 22531040 ~ 22531111 (-)
G178251 NA non-coding downstream 47147 21925492 ~ 21927360 (-)
G178237 NA non-coding downstream 141518 21832741 ~ 21832989 (-)
G178236 NA non-coding downstream 158105 21816127 ~ 21816402 (-)
G178201 NA non-coding downstream 458522 21515588 ~ 21515985 (-)
G178195 NA non-coding downstream 498865 21475230 ~ 21475642 (-)
G178279 NA non-coding upstream 60382 22099319 ~ 22099518 (-)
G178300 NA non-coding upstream 241408 22280345 ~ 22319081 (-)
G178309 NA non-coding upstream 294685 22333622 ~ 22334656 (-)
G178405 NA non-coding upstream 314937 22353874 ~ 22354311 (-)
LOC111195068 NA non-coding upstream 346568 22385505 ~ 22396206 (-)
G178267 grin3a,LOC107710005,LOC107750958 other downstream 40676 21933519 ~ 21933831 (-)
G178173 NA other downstream 678674 21291522 ~ 21295833 (-)
LOC111194984 sh2d4a other downstream 2235194 19738649 ~ 19739313 (-)
LOC103035567 LOC103035567,LOC108425166 other downstream 2846384 19119786 ~ 19128123 (-)
G177704 NA other downstream 2882361 19091146 ~ 19092146 (-)
G178426 NA other upstream 416560 22455497 ~ 22456779 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other upstream 462381 22501318 ~ 22509783 (-)
G178450 NA other upstream 633195 22672132 ~ 22672683 (-)
LOC111195067 NA other upstream 896553 22935490 ~ 22941664 (-)
sh2d4a sh2d4a other upstream 906224 22945161 ~ 22957226 (-)

Expression


Co-expression Network