LOC103047607 (LOC103047607)


Basic Information

Item Value
gene id LOC103047607
gene name LOC103047607
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22322720 ~ 22334543 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254085.3
GCACTTTATTATCTGGACGGACAGGTTCAGCGAGGAAAACCCGCACGAGCACAAGAACTACAGAACACAATGAGAGAAAGCCGCGTCCTCCTGCTGAGGTGCTCAGGGAACCATGGAAGGCGCGCGATGCTCAATGGGGGAGTGACCGTGTCCACCAAGGCTGACCAAAGCTGATGAGGaacactttttaaccagctTTCCAACTCCAGTACCAACTATCAGTCTACCAGTCTGTTTCTAAAACGTTCCTGACAGGTAACCAACATGGCTTTTGCACGCTTTATACGTCAGTATGTGGAACCGGTGGTGTTCTGCGCACAGGTGGCCAGCGCCTTCTTTGATACTGGTCTCCAGATGGTGGTGAAGCAGCGCAGCCAGAACTCTACAAGCAACAGCAGCACCACTGACCACCAAGATCACAGTCAGAACATCATCGCCAACTTCTACATGATCTTTAACATGCTGACCAAGTTCGTCCCCATCATTCCTGCACTAGTGTTGGCGCGAATCGGGGACAGGGGTTACCGGAAGGTCCCCATCGTAGTCCCTCTGGTGGGATACACCGTGTCCAGGGCATTGCTGCTGTTCGTGATCCTGCTTGATTGGCGAATAGAGGTGATGTACGCCGCCCCAGTGATTCATGGCCTTTGCGGAGGCTTCTCGTCCTACTGGGCCGGCGTCATGGCGCTTGTGTCGGTCACCACAAGCGAAGAAGACCGATCCCTCCGCATCATGCGCACAGAGCTGGTGTACGGCATGGCCGGCTTCCTGGGCAGCCTAGCCTCGGGTCACCTGTTCCAGCTGTACTCGGTGGACATAAAGCAGGGTGTGGTGCTTGCGAGCATGAGTGTGGTGCTCTATGTTTTCTGTCTCCTCTACGCCACCTTTGTCCTGAAGGTGAGCCGGCTCGCCCAAGACGGTCTACAAAGGCAGGACAGCACCGGCATCATCAGCAACCACTTCCAGCAGGACAAGATGATCATCGCCCTGCTCTTCCTCAGCGGGATCTTGTACGATGTGGCCGTTGGAGGCGGAGTGGAGATGCTGTCCATTTACGTCCTGAAGCCACCTCTGGCGTGGAGCGCCACGGAAGTGGGCTACGGGAATGCCGCTGGAAACGTCATCTTCATCACCAGCTTTCTGGGCGTGAAGCTCTTCACCAGGTTTTCTGTGAGCGACTCCAGCATGGTCATGATAGGCATGGTGTCATTCATGATCGGGATCTACTTCATGACCTTCGTCACCTCCACGGCCATGTACTTTTTAGccCGTTCTGTAATGTTGTTTGCGCTGATCCCAATGCCAACCATCCGCTCTCTACTGTCCAAGCAAGTCCGAGGAACATCATATGGAATGACTTTCACATGCCTCCAGCTCTCCTTCAGACTGGCCAGTTTAGCTACAACACCCATCTACACCAAAATCTACGAGTCCACGCTGGACACCTTCCCTGGATTCGTCTTCATCTTATCCAGCTGCATCACCTTCCTCTCTGTTATACCCATCAGtgttgtaggctggtGCACTGTGAAGCGGGATAACTATGAGATAATCCAAGGGAACTGAAGCAGGCGGATCTTCACCTGATTGAGAGACTATAAGAAAGAACGCGAGAGTACTGTGTTCTGTCTCCTgctgtgaaagaaaaaaaaaacatttattaattttaaacagatGCAGCTCACAATTTTTACTGTAACCATAACATAGTGTTActgtattacattttacattagaCTGGTAATGTTTATTTGTGAGACATTTGGTTTGTCTCagctgtttatttgtgtattgcgcattgttacattattgttattatagtgTTACAGTGTACATGATACATGATATAGTGTATATGATTTTGTATGAGAATTTTACTGTGATGTTATAGcagaaaatgttgtttttttgagtTTATTAGGAGACCGATcatttactattttaaaatgtaacatttttgttattattactgctattattattgatgtatgtaatgttcttttttatgttaatacGTGTGTCAATTCTGATGTAAAACTTTACACTGAAGTGCTGGCACTGAGAGGCGATATGAGAAGAATATGATGGATTGAAATATTCTTTATGCATTTAAGTTGTAAGCAAGGATGCTactgaatatactgtactatcaAAAGGCATTAACACATCATTTATTAACCCATAGAaccctttatttaatatttagttatGAATCCTTATGCAGAAACAACTCTGAACAAGGATATCTTGTGAAGGAATCTCACAGGGTTACATTTTTGGGGGAATATTAAACTGATGATAATTACCAAAGCAGTGTGAGCGTCAGTATTTCAAACGCACTGATTAAAAGGGCTCAGATTTCagattaaaacactgaaacgcacagttggccatgctctctctctggggggGTTAGATGGTGCTCTCTACCCTCTTCACTCCTAGTTTAATGTTGGTCAGCACTGGCATCTGTTAGCTGCTTTATTAGAGTTGGGGATCTGGCGCTTTCTTCTGAGTGCACTGGCTGCTTACTAATGCTGCATTGAATGTAgtagttggaaaagaggcggggctgatttcacatg
>XM_007254086.3
CCATAGCTGACAGAGGCtgctctttattctttattcagtCGAGTAGACTCGCCTCAGCTCGTTTCTGAGAGCTGCACGGCTGTTAGAACGTCTATCTGCGACTAATACACGTTTATCAGAACGTTATAACGTCTAAACGACTGTTGTTTTTTGCCTGTTTGTTGCTCAGGTGCTCAGGGAACCATGGAAGGCGCGCGATGCTCAATGGGGGAGTGACCGTGTCCACCAAGGCTGACCAAAGCTGATGAGGaacactttttaaccagctTTCCAACTCCAGTACCAACTATCAGTCTACCAGTCTGTTTCTAAAACGTTCCTGACAGGTAACCAACATGGCTTTTGCACGCTTTATACGTCAGTATGTGGAACCGGTGGTGTTCTGCGCACAGGTGGCCAGCGCCTTCTTTGATACTGGTCTCCAGATGGTGGTGAAGCAGCGCAGCCAGAACTCTACAAGCAACAGCAGCACCACTGACCACCAAGATCACAGTCAGAACATCATCGCCAACTTCTACATGATCTTTAACATGCTGACCAAGTTCGTCCCCATCATTCCTGCACTAGTGTTGGCGCGAATCGGGGACAGGGGTTACCGGAAGGTCCCCATCGTAGTCCCTCTGGTGGGATACACCGTGTCCAGGGCATTGCTGCTGTTCGTGATCCTGCTTGATTGGCGAATAGAGGTGATGTACGCCGCCCCAGTGATTCATGGCCTTTGCGGAGGCTTCTCGTCCTACTGGGCCGGCGTCATGGCGCTTGTGTCGGTCACCACAAGCGAAGAAGACCGATCCCTCCGCATCATGCGCACAGAGCTGGTGTACGGCATGGCCGGCTTCCTGGGCAGCCTAGCCTCGGGTCACCTGTTCCAGCTGTACTCGGTGGACATAAAGCAGGGTGTGGTGCTTGCGAGCATGAGTGTGGTGCTCTATGTTTTCTGTCTCCTCTACGCCACCTTTGTCCTGAAGGTGAGCCGGCTCGCCCAAGACGGTCTACAAAGGCAGGACAGCACCGGCATCATCAGCAACCACTTCCAGCAGGACAAGATGATCATCGCCCTGCTCTTCCTCAGCGGGATCTTGTACGATGTGGCCGTTGGAGGCGGAGTGGAGATGCTGTCCATTTACGTCCTGAAGCCACCTCTGGCGTGGAGCGCCACGGAAGTGGGCTACGGGAATGCCGCTGGAAACGTCATCTTCATCACCAGCTTTCTGGGCGTGAAGCTCTTCACCAGGTTTTCTGTGAGCGACTCCAGCATGGTCATGATAGGCATGGTGTCATTCATGATCGGGATCTACTTCATGACCTTCGTCACCTCCACGGCCATGTACTTTTTAGccCGTTCTGTAATGTTGTTTGCGCTGATCCCAATGCCAACCATCCGCTCTCTACTGTCCAAGCAAGTCCGAGGAACATCATATGGAATGACTTTCACATGCCTCCAGCTCTCCTTCAGACTGGCCAGTTTAGCTACAACACCCATCTACACCAAAATCTACGAGTCCACGCTGGACACCTTCCCTGGATTCGTCTTCATCTTATCCAGCTGCATCACCTTCCTCTCTGTTATACCCATCAGtgttgtaggctggtGCACTGTGAAGCGGGATAACTATGAGATAATCCAAGGGAACTGAAGCAGGCGGATCTTCACCTGATTGAGAGACTATAAGAAAGAACGCGAGAGTACTGTGTTCTGTCTCCTgctgtgaaagaaaaaaaaaacatttattaattttaaacagatGCAGCTCACAATTTTTACTGTAACCATAACATAGTGTTActgtattacattttacattagaCTGGTAATGTTTATTTGTGAGACATTTGGTTTGTCTCagctgtttatttgtgtattgcgcattgttacattattgttattatagtgTTACAGTGTACATGATACATGATATAGTGTATATGATTTTGTATGAGAATTTTACTGTGATGTTATAGcagaaaatgttgtttttttgagtTTATTAGGAGACCGATcatttactattttaaaatgtaacatttttgttattattactgctattattattgatgtatgtaatgttcttttttatgttaatacGTGTGTCAATTCTGATGTAAAACTTTACACTGAAGTGCTGGCACTGAGAGGCGATATGAGAAGAATATGATGGATTGAAATATTCTTTATGCATTTAAGTTGTAAGCAAGGATGCTactgaatatactgtactatcaAAAGGCATTAACACATCATTTATTAACCCATAGAaccctttatttaatatttagttatGAATCCTTATGCAGAAACAACTCTGAACAAGGATATCTTGTGAAGGAATCTCACAGGGTTACATTTTTGGGGGAATATTAAACTGATGATAATTACCAAAGCAGTGTGAGCGTCAGTATTTCAAACGCACTGATTAAAAGGGCTCAGATTTCagattaaaacactgaaacgcacagttggccatgctctctctctggggggGTTAGATGGTGCTCTCTACCCTCTTCACTCCTAGTTTAATGTTGGTCAGCACTGGCATCTGTTAGCTGCTTTATTAGAGTTGGGGATCTGGCGCTTTCTTCTGAGTGCACTGGCTGCTTACTAATGCTGCATTGAATGTAgtagttggaaaagaggcggggctgatttcacatg
>XM_015607076.2
cTTTAGCGTCGCTCAGGCGTTAGCTGTAGCCTACACTTTATCTGTAGCTGTATGTAGACTAGACTAcactttactctttactctctccctctttctctctctctctctctttctctctcgtgaGTAATCCAGAAGTGCTCAGGGAACCATGGAAGGCGCGCGATGCTCAATGGGGGAGTGACCGTGTCCACCAAGGCTGACCAAAGCTGATGAGGaacactttttaaccagctTTCCAACTCCAGTACCAACTATCAGTCTACCAGTCTGTTTCTAAAACGTTCCTGACAGGTAACCAACATGGCTTTTGCACGCTTTATACGTCAGTATGTGGAACCGGTGGTGTTCTGCGCACAGGTGGCCAGCGCCTTCTTTGATACTGGTCTCCAGATGGTGGTGAAGCAGCGCAGCCAGAACTCTACAAGCAACAGCAGCACCACTGACCACCAAGATCACAGTCAGAACATCATCGCCAACTTCTACATGATCTTTAACATGCTGACCAAGTTCGTCCCCATCATTCCTGCACTAGTGTTGGCGCGAATCGGGGACAGGGGTTACCGGAAGGTCCCCATCGTAGTCCCTCTGGTGGGATACACCGTGTCCAGGGCATTGCTGCTGTTCGTGATCCTGCTTGATTGGCGAATAGAGGTGATGTACGCCGCCCCAGTGATTCATGGCCTTTGCGGAGGCTTCTCGTCCTACTGGGCCGGCGTCATGGCGCTTGTGTCGGTCACCACAAGCGAAGAAGACCGATCCCTCCGCATCATGCGCACAGAGCTGGTGTACGGCATGGCCGGCTTCCTGGGCAGCCTAGCCTCGGGTCACCTGTTCCAGCTGTACTCGGTGGACATAAAGCAGGGTGTGGTGCTTGCGAGCATGAGTGTGGTGCTCTATGTTTTCTGTCTCCTCTACGCCACCTTTGTCCTGAAGGTGAGCCGGCTCGCCCAAGACGGTCTACAAAGGCAGGACAGCACCGGCATCATCAGCAACCACTTCCAGCAGGACAAGATGATCATCGCCCTGCTCTTCCTCAGCGGGATCTTGTACGATGTGGCCGTTGGAGGCGGAGTGGAGATGCTGTCCATTTACGTCCTGAAGCCACCTCTGGCGTGGAGCGCCACGGAAGTGGGCTACGGGAATGCCGCTGGAAACGTCATCTTCATCACCAGCTTTCTGGGCGTGAAGCTCTTCACCAGGTTTTCTGTGAGCGACTCCAGCATGGTCATGATAGGCATGGTGTCATTCATGATCGGGATCTACTTCATGACCTTCGTCACCTCCACGGCCATGTACTTTTTAGccCGTTCTGTAATGTTGTTTGCGCTGATCCCAATGCCAACCATCCGCTCTCTACTGTCCAAGCAAGTCCGAGGAACATCATATGGAATGACTTTCACATGCCTCCAGCTCTCCTTCAGACTGGCCAGTTTAGCTACAACACCCATCTACACCAAAATCTACGAGTCCACGCTGGACACCTTCCCTGGATTCGTCTTCATCTTATCCAGCTGCATCACCTTCCTCTCTGTTATACCCATCAGtgttgtaggctggtGCACTGTGAAGCGGGATAACTATGAGATAATCCAAGGGAACTGAAGCAGGCGGATCTTCACCTGATTGAGAGACTATAAGAAAGAACGCGAGAGTACTGTGTTCTGTCTCCTgctgtgaaagaaaaaaaaaacatttattaattttaaacagatGCAGCTCACAATTTTTACTGTAACCATAACATAGTGTTActgtattacattttacattagaCTGGTAATGTTTATTTGTGAGACATTTGGTTTGTCTCagctgtttatttgtgtattgcgcattgttacattattgttattatagtgTTACAGTGTACATGATACATGATATAGTGTATATGATTTTGTATGAGAATTTTACTGTGATGTTATAGcagaaaatgttgtttttttgagtTTATTAGGAGACCGATcatttactattttaaaatgtaacatttttgttattattactgctattattattgatgtatgtaatgttcttttttatgttaatacGTGTGTCAATTCTGATGTAAAACTTTACACTGAAGTGCTGGCACTGAGAGGCGATATGAGAAGAATATGATGGATTGAAATATTCTTTATGCATTTAAGTTGTAAGCAAGGATGCTactgaatatactgtactatcaAAAGGCATTAACACATCATTTATTAACCCATAGAaccctttatttaatatttagttatGAATCCTTATGCAGAAACAACTCTGAACAAGGATATCTTGTGAAGGAATCTCACAGGGTTACATTTTTGGGGGAATATTAAACTGATGATAATTACCAAAGCAGTGTGAGCGTCAGTATTTCAAACGCACTGATTAAAAGGGCTCAGATTTCagattaaaacactgaaacgcacagttggccatgctctctctctggggggGTTAGATGGTGCTCTCTACCCTCTTCACTCCTAGTTTAATGTTGGTCAGCACTGGCATCTGTTAGCTGCTTTATTAGAGTTGGGGATCTGGCGCTTTCTTCTGAGTGCACTGGCTGCTTACTAATGCTGCATTGAATGTAgtagttggaaaagaggcggggctgatttcacatg

Function

NR:

description
thymic stromal cotransporter homolog

GO: NA

KEGG:

id description
K14614 SLC46A2; MFS transporter, PCFT/HCP family, solute carrier family 46 (thymic stromal cotransporter), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254085.3 False 2585 mRNA 0.46 5 22322720 22334543
XM_007254086.3 True 2656 mRNA 0.46 4 22322997 22334543
XM_015607076.2 False 2621 mRNA 0.46 5 22322841 22334543

Neighbor

gene id symbol gene type direction distance location
grin3a grin3a,LOC107750958,LOC107710005,LOC107702562,LOC107554227,LOC104941214 coding upstream 358012 21932331 ~ 21964708 (+)
musk musk coding upstream 953446 21326212 ~ 21369274 (+)
cst8 NA coding upstream 1026871 21285246 ~ 21295849 (+)
LOC103023250 NA coding upstream 1064133 21203262 ~ 21258587 (+)
LOC103022731 cntfr,LOC107554853,LOC107756542,LOC107738850,LOC107554231 coding upstream 1145262 20842037 ~ 21177458 (+)
sec31a sec31a coding downstream 86819 22421362 ~ 22453611 (+)
tmem150c tmem150c,LOC107558260 coding downstream 133894 22468437 ~ 22476305 (+)
LOC103022635 mat2al,LOC108440739,LOC108276530,LOC107732036,LOC107653488,LOC107573852,LOC102202437 coding downstream 175345 22509888 ~ 22515585 (+)
LOC111195066 NA coding downstream 184876 22519419 ~ 22528083 (+)
ankrd55 ankrd55,LOC107670032,LOC107737049,LOC107702571 coding downstream 504965 22839508 ~ 22863383 (+)
G178289 NA non-coding upstream 8426 22313170 ~ 22314294 (+)
G178282 NA non-coding upstream 219674 22102749 ~ 22103046 (+)
G178280 NA non-coding upstream 221437 22100040 ~ 22101283 (+)
G178278 NA non-coding upstream 223162 22099319 ~ 22099558 (+)
G178254 NA non-coding upstream 349686 21972714 ~ 21973034 (+)
G178310 NA non-coding downstream 5436 22339979 ~ 22386661 (+)
LOC111195069 NA non-coding downstream 46067 22380610 ~ 22381578 (+)
G178320 NA non-coding downstream 56655 22391198 ~ 22396197 (+)
G178344 NA non-coding downstream 181988 22516531 ~ 22524073 (+)
G178368 tln1 non-coding downstream 270452 22604995 ~ 22605572 (+)
LOC103046694 LOC108440723,LOC108277161 other upstream 7413 22127121 ~ 22315307 (+)
ier3ip1 ier3ip1,LOC106633120 other upstream 1923555 20396377 ~ 20399165 (+)
G177950 NA other upstream 2183156 20138822 ~ 20139564 (+)
LOC103043854 NA other upstream 2226009 20089238 ~ 20096711 (+)
LOC103042206 LOC108428882 other upstream 2546929 19750942 ~ 19775791 (+)
LOC103025565 scd5 other downstream 121776 22456319 ~ 22465729 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other downstream 152280 22486823 ~ 22491503 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other downstream 158897 22493440 ~ 22502159 (+)
G178352 NA other downstream 210097 22544640 ~ 22546130 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other downstream 354458 22689001 ~ 22709557 (+)

Expression


Co-expression Network