LOC103045166 (LOC108440562,LOC108276891,LOC107586118,LOC107687659)


Basic Information

Item Value
gene id LOC103045166
gene name LOC108440562,LOC108276891,LOC107586118,LOC107687659
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 18181740 ~ 18212818 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254936.3
gagagagagagagagagagagagagagagagagaagatggcaggaggtgtggagctggtGGATCTGTAGGATTTCCCTCCAGAACCGCGTGGAACCGTGTGGATCTGAGTGGAACCGGGTCTGACTGGAGCTGTCCGGCCTCCAGCAGCAGAGAGGGTATTATAGAGGACAGCGGTCATGCAGAAGGCAGGGACGGCTCCGTCCTCACGGGGTCCCAGCGCTCCCGGATCTCCAGCTACTTCTATTGTGGCCAGGATGGATAATCAGGTGATTGGTTATAAAGATTTGGCAGCTATTCCTAGAGATAAAGCCATTCTGGAGGTGGAGCGTCCTGACCTGATGGTGTACGAACCTCACTTCAACATCTCCGCTCTGGACCGAACCGGCCTTTCCCGCAGCAGAGAGaGGTCCATGTCTCCTCACTCCATCTCACCCCCTCCGTCCCCTGAGATTTTTGCCTCCAGAGAGCAGAAGGCGTGGTCTGAACAGGGTTCACCCGGCGGATCCACCATGGGCTCTACAGTTCAGCTCCGCAAAATCAGCGCCACCAAAGGACCCCTGCAGCACTTCCACAGGCCAGataatgGAAGCAACATCTACAACAAGCCTCCCATCTATAAGCACGCTCCCCAGGAGGCACCTGCACCATCccataataaacacaaagagGAGGTCATCATCATATCCTCCAAATTCCCAGCTGCCCAACCCCCTGACCCCACCCAGCCATCGAAGATCGAGACCGAATACTGGCCCTGCCCACCTTCTCTGGCTAGCGTGGagattgAATGGAGGAGGAAGGCGGAGGAGGAGGGCAGGGCTGTGGAGGATGATGAGTTTGAGGACCTGACTGAAGACGCCAAGAGACTGCAGGAACAGGAGCTAAATAAGATCCAGTCGAACTTGGGTAAACTGATCCTAAAGGAGGAAATAGAGAAATCTGTTCACATCCGGAGGAAAACTCGCTCCCTACCCGACAGGACACACATGCACTTAGGTTCCAGTGGAGCATCTAAATCTGCCTCGTTACCTCCCTGCAGTCGCTCAGGACTCACCCGGCTGCAGTCAGCTGACTTCACCTCCACAGACGGCGACAAACCCAGAACAGGCCTGCAGAACGGAGAACCTCAGCGAGGCCGAATGGACCGGGGGAATTCACTGCCCAGCATTCTGGAGCAGAAGatttaTCCTTATGAAATGCTGATCGTGAACCACAGAGGGCGATGTAAGCTTCCTCCCGGAGTGGACAGGACCAGACTGGAGAGGCATCTCTCTCCTGAAGATTTCGAGACTCTATTCGGAATGCCGATCTCAGAGTTTGATCGTCTGTCGCTGTGGAAAAGAAACgaactgaagaagaaagtctCGCTTTTCTAACACCTGCATCATCTTCAGCACGGACTCTCATTATTACCTGCCCGGGAGACACAGCAGACCCAACTCGGACCGATTCGGGATGATCAGACATCACCATTATCTCCAATAATCAGCTTTGATCTCTGACTTGTATCAGACAGCTTGCGTACGTCTCTGTGTACTGTTTAGGATAAAA
>XM_007254937.3
caGTTAGGTGGAAATAACAGCACTGTTGGAGGATATTTGTAGCCGTGCACAGGGAGTATATtagcaatataaaaaacaaatagaaaaatagatgtGTAACCTGTAACCATAGAAGATGTCgtttttgaagtattttttttattttaattaattgtagAAGCATGTATTTTTAGTGCATAATAAAAAAAGCGCAGCACGGCAAAGCAGTGCAAtgaaaatatagatatatatgtattttttcacaTTGGGAATGAATCGTCTTTTTTAAGGCGTCGTGTGGTTTAGGTGACCCAGTCGTCTCTTCATCCTCCTGCAGAAGAACCAGCAGAACCTCCTGCAGAAGCAGCAGAACCAGCGGAGCCGAGCACCATAGAACCGCGCAGAGCTGTCCGGCCTCCAGCAGCAGAGAGGGTATTATAGAGGACAGCGGTCATGCAGAAGGCAGGGACGGCTCCGTCCTCACGGGGTCCCAGCGCTCCCGGATCTCCAGCTACTTCTATTGTGGCCAGGATGGATAATCAGGTGATTGGTTATAAAGATTTGGCAGCTATTCCTAGAGATAAAGCCATTCTGGAGGTGGAGCGTCCTGACCTGATGGTGTACGAACCTCACTTCAACATCTCCGCTCTGGACCGAACCGGCCTTTCCCGCAGCAGAGAGaGGTCCATGTCTCCTCACTCCATCTCACCCCCTCCGTCCCCTGAGATTTTTGCCTCCAGAGAGCAGAAGGCGTGGTCTGAACAGGGTTCACCCGGCGGATCCACCATGGGCTCTACAGTTCAGCTCCGCAAAATCAGCGCCACCAAAGGACCCCTGCAGCACTTCCACAGGCCAGataatgGAAGCAACATCTACAACAAGCCTCCCATCTATAAGCACGCTCCCCAGGAGGCACCTGCACCATCccataataaacacaaagagGAGGTCATCATCATATCCTCCAAATTCCCAGCTGCCCAACCCCCTGACCCCACCCAGCCATCGAAGATCGAGACCGAATACTGGCCCTGCCCACCTTCTCTGGCTAGCGTGGagattgAATGGAGGAGGAAGGCGGAGGAGGAGGGCAGGGCTGTGGAGGATGATGAGTTTGAGGACCTGACTGAAGACGCCAAGAGACTGCAGGAACAGGAGCTAAATAAGATCCAGTCGAACTTGGGTAAACTGATCCTAAAGGAGGAAATAGAGAAATCTGTTCACATCCGGAGGAAAACTCGCTCCCTACCCGACAGGACACACATGCACTTAGGTTCCAGTGGAGCATCTAAATCTGCCTCGTTACCTCCCTGCAGTCGCTCAGGACTCACCCGGCTGCAGTCAGCTGACTTCACCTCCACAGACGGCGACAAACCCAGAACAGGCCTGCAGAACGGAGAACCTCAGCGAGGCCGAATGGACCGGGGGAATTCACTGCCCAGCATTCTGGAGCAGAAGatttaTCCTTATGAAATGCTGATCGTGAACCACAGAGGGCGATGTAAGCTTCCTCCCGGAGTGGACAGGACCAGACTGGAGAGGCATCTCTCTCCTGAAGATTTCGAGACTCTATTCGGAATGCCGATCTCAGAGTTTGATCGTCTGTCGCTGTGGAAAAGAAACgaactgaagaagaaagtctCGCTTTTCTAACACCTGCATCATCTTCAGCACGGACTCTCATTATTACCTGCCCGGGAGACACAGCAGACCCAACTCGGACCGATTCGGGATGATCAGACATCACCATTATCTCCAATAATCAGCTTTGATCTCTGACTTGTATCAGACAGCTTGCGTACGTCTCTGTGTACTGTTTAGGATAAAA
>XM_007254938.2
agagagagagagagagagagagagagagagagagaagatggcaggaggtgtggagctggtGGATCTGTAGGATTTCCCTCCAGAACCGCGTGGAACCGTGTGGATCTGAGTGGAACCGGGTCTGACTGGAGCTGTCCGGCCTCCAGCAGCAGAGAGGGTATTATAGAGGACAGCGGTCATGCAGAAGGCAGGGACGGCTCCGTCCTCACGGGGTCCCAGCGCTCCCGGATCTCCAGCTACTTCTATTGTGGCCAGGATGGATAATCAGGTGATTGGTTATAAAGATTTGGCAGCTATTCCTAGAGATAAAGCCATTCTGGAGGTGGAGCGTCCTGACCTGATGGTGTACGAACCTCACTTCAACATCTCCGCTCTGGACCGAACCGGCCTTTCCCGCAGCAGAGAGaGGTCCATGTCTCCTCACTCCATCTCACCCCCTCCGTCCCCTGAGATTTTTGCCTCCAGAGAGCAGAAGGCGTGGTCTGAACAGGGTTCACCCGGCGGATCCACCATGGGCTCTACAGTTCAGCTCCGCAAAATCAGCGCCACCAAAGGACCCCTGCAGCACTTCCACAGGCCAGataatgGAAGCAACATCTACAACAAGCCTCCCATCTATAAGCACGCTCCCCAGGAGGCACCTGCACCATCccataataaacacaaagagGAGGTCATCATCATATCCTCCAAATTCCCAGCTGCCCAACCCCCTGACCCCACCCAGCCATCGAAGATCGAGACCGAATACTGGCCCTGCCCACCTTCTCTGGCTAGCGTGGagattgAATGGAGGAGGAAGGCGGAGGAGGAGGGCAGGGCTGTGGAGGATGATGAGTTTGAGGACCTGACTGAAGACGCCAAGAGACTGCAGGAACAGGAGCTAAATAAGATCCAGTCGAACTTGGGTAAACTGATCCTAAAGGAGGAAATAGAGAAATCTGTTCACATCCGGAGGAAAACTCGCTCCCTACCCGACAGGACACACATGCACTTAGGTTCCAGTGGAGCATCTAAATCTGCCTCGTTACCTCCCTGCAGTCGCTCAGGACTCACCCGGCTGCAGTCAGCTGACTTCACCTCCACAGACGGCGACAAACCCAGAACAGGCCTGCAGatttaTCCTTATGAAATGCTGATCGTGAACCACAGAGGGCGATGTAAGCTTCCTCCCGGAGTGGACAGGACCAGACTGGAGAGGCATCTCTCTCCTGAAGATTTCGAGACTCTATTCGGAATGCCGATCTCAGAGTTTGATCGTCTGTCGCTGTGGAAAAGAAACgaactgaagaagaaagtctCGCTTTTCTAACACCTGCATCATCTTCAGCACGGACTCTCATTATTACCTGCCCGGGAGACACAGCAGACCCAACTCGGACCGATTCGGGATGATCAGACATCACCATTATCTCCAATAATCAGCTTTGATCTCTGACTTGTATCAGACAGCTTGCGTACGTCTCTGTGTACTGTTTAGGATAAAA

Function

NR:

description
PREDICTED: dematin-like isoform X1

GO:

id name namespace
GO:0007010 cytoskeleton organization biological_process
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254936.3 False 1552 mRNA 0.53 16 18187058 18212818
XM_007254937.3 True 1807 mRNA 0.50 16 18181740 18212818
XM_007254938.2 False 1487 mRNA 0.53 15 18187057 18212818

Neighbor

gene id symbol gene type direction distance location
itga1 itga1 coding upstream 479624 17647967 ~ 17702116 (+)
LOC103021841 NA coding upstream 610271 17564914 ~ 17571469 (+)
LOC103023379 NA coding upstream 681879 17492213 ~ 17499861 (+)
dhx29 dhx29,LOC107562543,LOC107571104 coding upstream 691696 17464001 ~ 17490044 (+)
tctn1 NA coding upstream 850902 17317118 ~ 17330838 (+)
LOC103044456 NA coding downstream 23479 18236297 ~ 18252700 (+)
LOC103021446 NA coding downstream 118863 18331681 ~ 18337181 (+)
LOC103047729 NA coding downstream 126043 18338861 ~ 18347330 (+)
letm2 letm2,LOC107586128,LOC107705077,LOC107678006,LOC107687501 coding downstream 312047 18524865 ~ 18537048 (+)
LOC103044763 NA coding downstream 347521 18560339 ~ 18563776 (+)
G177215 NA non-coding upstream 4974 18175476 ~ 18176766 (+)
G177203 NA non-coding upstream 76627 18103086 ~ 18105113 (+)
G177201 NA non-coding upstream 83553 18097911 ~ 18098187 (+)
G177198 NA non-coding upstream 101020 18080009 ~ 18080720 (+)
G177191 NA non-coding upstream 177760 18003720 ~ 18003980 (+)
G177216 NA non-coding downstream 36610 18249428 ~ 18258855 (+)
G177240 NA non-coding downstream 95074 18307892 ~ 18309648 (+)
G177257 NA non-coding downstream 192195 18405013 ~ 18464234 (+)
LOC111195058 ddhd2,LOC106583313 non-coding downstream 246240 18459058 ~ 18466201 (+)
G177274 NA non-coding downstream 257118 18469936 ~ 18472897 (+)
xpo7 xpo7,LOC107678024,LOC107586117 other upstream 7222 18138712 ~ 18174518 (+)
G176882 inpp5j other upstream 1134751 17042835 ~ 17046989 (+)
fam136a fam136a,LOC102792467 other upstream 1357412 16820935 ~ 16824328 (+)
LOC103047397 unc13b,LOC107686461,LOC107688005 other upstream 2208083 15794264 ~ 15973657 (+)
LOC103039555 LOC108415819 other upstream 4112378 13951405 ~ 14069362 (+)
G177219 NA other downstream 11455 18224273 ~ 18226133 (+)
LOC103047412 golga7,LOC108276767,LOC107553707,LOC107687624,LOC107678053,LOC107586122 other downstream 112055 18324873 ~ 18330489 (+)
LOC103024155 si:dkey-81j8.6,LOC108440140,LOC107720718,LOC107572716,LOC107678005,LOC105904646 other downstream 327080 18539898 ~ 18558444 (+)
LOC111194983 NA other downstream 1507483 19720301 ~ 19722560 (+)
LOC103042206 LOC108428882 other downstream 1538124 19750942 ~ 19775791 (+)

Expression


Co-expression Network