LOC103047729


Basic Information

Item Value
gene id LOC103047729
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 18338861 ~ 18347330 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254946.3
gtataatgtgtgtgaaaGCTATAAATGGGATATATTGTAGTAAATAATTGTAGTAATAAGACTGGAAGCTGTAGAATGTGAAGATCTGGAGCTGCATGAGGATTAGTAAAGgcCTTTGATCAGTGTAAATCTGCAGAAGGAGATCAGGATGGCTTCTGCCAGCAACACTGATTTTAAGTTGTACCGGCCGTCGGGTGGAGATGTTCAGTCCAGCTCGGTGGTCATCCTCCCCTGTTACCTGCATCCTGAGCGCAGCGCGGTGGAGATGACGGTCAGGTGGTTCAGGGGGACGGAGTGTATCTGCCTGTATAAAGATGGGAGGATGACTGTGGGGCGGGGCTACGAGGGGCGGATCAGTCTGTTTTCTCAGGAGCTGGAGAAAGGAAATGTCTCACTGATAATCAGAGACTACAGCTGGACAAGTGATGATTACCTGTGTCAGGTGTCCAACAAAGAAACTACAGCAGAGTTTACTGTGGGACTGGatGATCCCACAGAGGGTTTGGGTGCTTACATTTTGCAAGACAGGGACAGGAAATGGACAGaagatgaaagaaaaaagatggaGGAATCTGCTTTGATCATTGaattaTCAGCAGATGCCACACAGTCACTTGAGATGAAGAACAAGAAGCTGGAAAAGGAGAAGACACTAATTATGGAGGAAAAGAGCAGACTACAGCAAGAGCTCGGAGAGActcagcagcagcttcaggagAAAGATACTGCAGTGAAGAACATGGAGACAGAGCTGGAACACAGTAAAAAGCAGCTGGAGAGAATTGAAGAGGAACTGAAGAAAAAGAACAGGAAACTACAGGAGATGGAGTGTATGTTGCCTCCGGCTGTACCTCAGTCAGGATCAGTGGAGCTGGATCCTCAAGATGTAATTCCAGCAAGACCACGCAGGAGACACAGTAAAGAAGGGATTCCTCCAAGAATGAGAGAAGCCCTGTTGGAGCTCCGGCTGGTTCTGTTGGGTCGGACCGAGCACGGTGAAGACATGAAGAGCTCCATAGGAGCCGCCATCTTTGGCGAAAAGAGGAGGAGCCAGGCTAGAGAGCCTATAGTGAGGGAGCAGAGTGATGTGAGGCGGGGAGTGGTGTCTGGGAGGCAGGTAACCGTGGTGGACACTCTTGATTGGTTCTCTCCTGGACTGTCTCAGGAGGCGCTGAGGAACGACGTAGGAGTCTGCATCAATCTGTCCTCACCAGGACCTCACGCCTTCCTGCTGGTCGTACCGGTGAGGCAGGTGGAGGATGAGTCTACTGGAGAGGAGGTGGGGATGCTGGAGAGGATGGGGGAGATATTCGGGGAGAGGTGCTGGAGGAACACTATGGTTGTCGTGGTGACGGAGGAAGATCAGGTGGAGGATGTTGACGAGTTTGTTCGGTCAGGAAACGAGGAGGTTCGGAGACTTGTGGAGAAATGTGAGGAAAGGTATCACTGTCTCCACTTGGGCGACGGAGGTGTGGACGAGTCGGAGATCTGTGAGCTTCTAAAGAAGGTGGAGGAGATGGTGGGTGGACACAGAGACAAGTTCTACAGCAGCGAGGTCTATCTGGAGGCGGAGGCTCACATCCGAGAGATCGAGGAAAGAGTGGTAAGAGAGCGAGAGGAGATACGAGAGAAGCAGGAGAGAGAAGCTGAGGAGAAACGGCAGAGGAACGTCCGCAAGTCCGAAGTCCAGTTCCGAGAGTCTACGGCTCAGTTTCGGGAGCAGATAAATCAGCACGAAGTCCGAATTACGACTCTGGAAACAATGGTGAAGGAGGAGCGGGATGAAAAACGGAAGTTAGAGCTGGAGAACCATTTGGAGCGAGAGGTTCAGCAGAGAAACAAGCTTCAGTTGGAGCTTCAGAGACTGAAAGAACAGACTGAGAGGGACCGGAGGGCGATGGAGGAGAGACACCAACAGGAGATAGAGGAGATTAGGGAGGTGTATGAAGGAGAAGCCCAGATGAAGGCGGAGCGAATACTCAGAAAGAATATCCTGCCTGAACTCAAGCTGAGGACACTGGAACTCGtggcagagaagcagaaagatcTGGACATTCGATTGAAGGAGAAGGACAGGGAGTTGGAGCGACTGAGAATAAGACTCCAGGAGATGACACCAGCTCAAAGAGATGAGCCTCAGATTGACACTCAACAGCCAGGACTATTTAGCTGTTTTTGGAAAATACTCAGTGATCCAGTACTAAACACTCAATCagatcagtaatcagatttaatCAATAAGTCAGTTTACATTTACTGCGCTTCATATAGAGTCAAACACACCTGTAGGAGCATACTAGTCCTGTAGGGGGCGATAGGTCCTCATTAAGTGAGACACACcgtaaagaatgaaaaaaaaaaaggtcaaatccCAAATTACTCCCTAAACCCTACTCCCTAAGTAGTGAAAGACTCAAATACAGTTCTCTTACAAGCTTATGCTAATGTTTCTTTTCTATGTGTGAATGGAAATAATTTAAAGAACGGAGGAAGAAATCAGTTTTATGAAATCTGATCGTCTGTATGTAGAAGCTGAAGTATTATGACTTATTTAGGTCAATATAAAGGGAGTAAGAtcttagtagtttttttttttggtgaagatgttttataaagtttagacgtgtgtgtttaaaatatat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254946.3 True 2642 mRNA 0.48 9 18338861 18347330

Neighbor

gene id symbol gene type direction distance location
LOC103021446 NA coding upstream 1680 18331681 ~ 18337181 (+)
LOC103044456 NA coding upstream 86161 18236297 ~ 18252700 (+)
LOC103045166 LOC108440562,LOC108276891,LOC107586118,LOC107687659 coding upstream 126043 18181740 ~ 18212818 (+)
itga1 itga1 coding upstream 636745 17647967 ~ 17702116 (+)
LOC103021841 NA coding upstream 767392 17564914 ~ 17571469 (+)
letm2 letm2,LOC107586128,LOC107705077,LOC107678006,LOC107687501 coding downstream 177535 18524865 ~ 18537048 (+)
LOC103044763 NA coding downstream 213009 18560339 ~ 18563776 (+)
LOC103027413 LOC103027413,LOC108440158,LOC103369922 coding downstream 291588 18638918 ~ 18645170 (+)
LOC103045675 LOC108440144,LOC100694769,LOC101477777,LOC102295999,LOC102799311 coding downstream 343602 18690932 ~ 18738736 (+)
anxa4 anxa4,LOC107746213 coding downstream 445039 18792369 ~ 18806551 (+)
G177240 NA non-coding upstream 29213 18307892 ~ 18309648 (+)
G177216 NA non-coding upstream 80006 18249428 ~ 18258855 (+)
G177215 NA non-coding upstream 162095 18175476 ~ 18176766 (+)
G177203 NA non-coding upstream 233748 18103086 ~ 18105113 (+)
G177201 NA non-coding upstream 240674 18097911 ~ 18098187 (+)
G177257 NA non-coding downstream 57683 18405013 ~ 18464234 (+)
LOC111195058 ddhd2,LOC106583313 non-coding downstream 111728 18459058 ~ 18466201 (+)
G177274 NA non-coding downstream 122606 18469936 ~ 18472897 (+)
G177283 NA non-coding downstream 133174 18480504 ~ 18482101 (+)
G177279 NA non-coding downstream 138377 18485707 ~ 18490606 (+)
LOC103047412 golga7,LOC108276767,LOC107553707,LOC107687624,LOC107678053,LOC107586122 other upstream 8372 18324873 ~ 18330489 (+)
G177219 NA other upstream 112728 18224273 ~ 18226133 (+)
xpo7 xpo7,LOC107678024,LOC107586117 other upstream 164343 18138712 ~ 18174518 (+)
G176882 inpp5j other upstream 1291872 17042835 ~ 17046989 (+)
fam136a fam136a,LOC102792467 other upstream 1514533 16820935 ~ 16824328 (+)
LOC103024155 si:dkey-81j8.6,LOC108440140,LOC107720718,LOC107572716,LOC107678005,LOC105904646 other downstream 192568 18539898 ~ 18558444 (+)
LOC111194983 NA other downstream 1372971 19720301 ~ 19722560 (+)
LOC103042206 LOC108428882 other downstream 1403612 19750942 ~ 19775791 (+)
LOC103043854 NA other downstream 1741908 20089238 ~ 20096711 (+)
G177950 NA other downstream 1791492 20138822 ~ 20139564 (+)

Expression


Co-expression Network