LOC103025514


Basic Information

Item Value
gene id LOC103025514
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 18565701 ~ 18570062 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254959.2
CAGCAGCCCCTCCGCCACAGCACTGCTATTGTTCTGGTGCTGAGCCGTGATTGGCTGCTGTGTGTTGATTGACAGCTGTGGGGGCGGGACAGTGAGGGTGTGGATTGGATTTACACTGAAGAGACAGATCAGCTCGtgaccagagagagaggagcatcAGATTATCAGACAGGTGAGATCAGGTGATCATGCTGGGACGCCGGACGCTGACGCTGGTTTGGGTGTGGATGTTGCTGGTGGCCTCTCTCTGCCCCTGGGCGTCTGGGAAGAAAGGGGGCATGTTCGGTGGGCGGGGAAAAGGCGTAGGGATGGGAGGCAAGACTCCGCCCACTCAGAGCAAGGGTTCCTCTAAGCAGGGGCTGAAGATGGCCGGGGCGGCGGCTGCTGGTGCGATCGGCGGGGCGGCTATCGGCTACGGCCTCGGCTCTCTGGGAAGACCAAGGTACGGTCACGGCTACGGTTATGACTACTCCGAAGAGGACAGGCGGTACCACCACCCCGACGGACCGGGGTACTACAACCGCTCTGATCTGAGGTACTATAAGGGTGGAGGCAGCTCAGGGCCCATCCTGAACACCCTGCTCATAATCGGATCGGTGCTTAGCATCTTCATGTTGGGCTGAAACGAACTTGAGGTGTCGCTATGCTAACATCAATCATCTGATGATCATCGGAGCTGCAGAAAGCCAACTATAGAAactataataactgtaataaaggTAATCATACGCTGGAACAGGGTTGAGATTTAAGAGGCGTGGCCTAATGGACAGACGGTAAGGGTGATGATGTCAGGTGCTGATTGTCTGTAGGATAGCATTCAATAGCATTCAATGCTAAAGTACTCAAAGAAAAAATGCATCTAATCAATTCTTCTATATCTTTAACTTAGTGCCTATAAACTTAAAGAACTAGTTTGGTAATGACGTACAATATCATGTTTGATCTATGATCCCAAAATCAGTTGATTAGTTAAGAAAGGTTTGGTGTCTGATGTGTAGAGGTGGGTCAGCATGCTAATGAAGAAAGCCCCCTCACTTTCCTTGCTGTGGAGATCTGCGTAAGTGCAGCAGCCAGAGCAagccaaaaaaaatctacatttttgcattattaatccattaataatgtttttaacagatttttgaAGCAAATGTATTACATTTCCGTGGGCTGGTGTTTGCAGGGATGAGGTGGGTGATTTTTTGTCTAAATCCAGTGTTAGCTCAGCTCAGATaccaaaacaaaactcaaaattAATCAACTGAATCTGGGTTTACAGATTAATCATAAATTGTATGTTGATTATAAGTTGTTTTAGTGACCTGCTCTTAAAATCTGCTCAAAAGCATTGCATAAAGACCTATTTCCATgccaaaaagaaatatatagtcATGTATTTATCAATATGTGAAATACATttcaaatgcattttaaatatattttaaaattatataatcgTTGCACTATATTAcgaaataatgcatattttggccacattttcaaatatattaaatatacaaatacatttaattgaatacatttatatatatttctattcacATGGGTTTTCTTATCAGTGAGGCACTATTGTAAGAACATTTTTGTAacttttcagtaattcattttttaCTAATTCAGGTTTCTTTGCTGTTTAAATTCATTATAGAGTGGAAATGTTTAAGCTTAAAATTAGTGAACGCTTATGTTGTGTATTGACTAGCATCAATGCTAATAGCATGAAGACATTAAATGCAGTGTACTGATTTGCctaaatctatttttaaatcttttcttTTCAGGCGTTAATTTGGGTAATAAAGTTAAGCTCTCAAAAAAACTCTTCAGTTTAGTAACTTAAGTCCCCTATGTAGGCAATAGGGAACAAAGCATGAGATATTCAGACAGACCCAAAGTGGCCCAGTTATTTAGAAGGTGGTAAAGTGCAGGGCACAATCTAACACATCTGTAAACATAATTAACAGTTAAAATGACCTTAAAAACTGTTGTAGAcaacattaccacccacagtggacagagcagtagGGGGTAATGATGGGGACCGGCAGCTTCTGGCGAGAATAGTCCAGTGCAGGAGACCACGCATACATATCAAGGCAAAAGTCACGGAATGCGAGGTAGGCTTttggttattatttatatatatttaacaaatacaCCAAAATAACATGTACAtgaatataatcaaatattcaGCAGTCAGTCAagctgaggagctgaaattgAACAGAAAATTGAACTGAAAGTTTAGAAGAAAGAAatcctatttattttactattttgtacTGTTTTAATTTCTCACTGTGTTATAAGAGTGTGAATATGATGTGATGGATTATTTCTGctggtttaatgtttttatatttgccAGTGATGTTCTTAAAGGGCTGATTTTACAgtgattttttgcaaatatatgttatttttatgctctgattattattattattattattataatggttGCTGCCGTGATATAATGCAGTTAGTTATTATTCTTGTGGTTATAATATGCAGTAGgatggtgtgtatgtgtgttattaaTGATGTTTTTGCTCAGACTGAATAAACACTGATGAGCTCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254959.2 True 2604 mRNA 0.39 2 18565701 18570062

Neighbor

gene id symbol gene type direction distance location
LOC103023096 ddhd2,LOC108440555,LOC107678050,LOC107553701,LOC107720719 coding downstream 83585 18459004 ~ 18482116 (-)
tacc1 NA coding downstream 116498 18405003 ~ 18449203 (-)
LOC103021760 loxl2,loxl2a,LOC108440557,LOC107720722,LOC107678026,LOC107705082,LOC107687596,LOC107553706 coding downstream 177298 18349905 ~ 18388403 (-)
LOC103046908 NA coding downstream 248139 18307853 ~ 18317562 (-)
LOC103046193 LOC103046193,LOC108440561,LOC107553709,LOC107720725,LOC107678020,LOC107705087,LOC107586120 coding downstream 263659 18257392 ~ 18302042 (-)
LOC103025819 rassf2 coding upstream 1167 18571229 ~ 18577765 (-)
LOC103026456 kcnip3,kcnip3b,LOC107092684,LOC106535652,LOC103473704,LOC103026456,LOC108440143,LOC107678047,LOC107572711,LOC107720714 coding upstream 9689 18579751 ~ 18595814 (-)
pcna pcna,LOC107658578,LOC107583397 coding upstream 34482 18604544 ~ 18609133 (-)
LOC103045069 bmp1,LOC108440159,LOC105014870,LOC107710833,LOC107661342 coding upstream 78724 18648786 ~ 18684766 (-)
LOC103045381 LOC108440153 coding upstream 116608 18686670 ~ 18691097 (-)
G177596 NA non-coding downstream 388 18561352 ~ 18565313 (-)
G177589 NA non-coding downstream 14834 18549010 ~ 18550867 (-)
G177584 NA non-coding downstream 28014 18534885 ~ 18537687 (-)
G177559 NA non-coding downstream 217047 18348298 ~ 18348654 (-)
G177555 NA non-coding downstream 226869 18338544 ~ 18338832 (-)
LOC111195060 NA non-coding upstream 50137 18620199 ~ 18624721 (-)
G177605 NA non-coding upstream 56227 18626289 ~ 18626532 (-)
G177607 NA non-coding upstream 59237 18629299 ~ 18629554 (-)
G177609 NA non-coding upstream 62352 18632414 ~ 18632670 (-)
G177626 NA non-coding upstream 166802 18736864 ~ 18740579 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 34066 18485642 ~ 18531635 (-)
G177568 NA other downstream 162693 18397582 ~ 18403008 (-)
G177526 NA other downstream 391176 18171849 ~ 18174525 (-)
stoml2 stoml2,LOC107686459,LOC107688641,LOC107569390,LOC106563216 other downstream 2775057 15780555 ~ 15790644 (-)
LOC111194989 NA other downstream 3000238 15528296 ~ 15565463 (-)
LOC111195059 NA other upstream 44830 18614892 ~ 18618612 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other upstream 316966 18887028 ~ 18934600 (-)
G177704 NA other upstream 521084 19091146 ~ 19092146 (-)
LOC103035567 LOC103035567,LOC108425166 other upstream 549724 19119786 ~ 19128123 (-)
LOC111194984 sh2d4a other upstream 1168587 19738649 ~ 19739313 (-)

Expression


Co-expression Network