LOC103025819 (rassf2)


Basic Information

Item Value
gene id LOC103025819
gene name rassf2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 18571229 ~ 18577765 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254960.3
AAAAAATTGCCTCCACTTCCTGTGTGAACACTTCTTAGGGAGGggccactcacacacacacacacgttcttCTGGACAGATCGATTCCTCGGTACCGGTTCTGGTTCTGCTGCACCTGTTACCCACTATCTTCCTCCGGGTTCGAGCGTCTGGCCTACAATCTACTGTCCTACTGCTCCTCTCAACAGTACTGCAGTGTTCTGGTGGTTCTGGTGGCAccaggtggtggtggtgataatGGCTGGTGAGCAGGACTCGGAGCAGGTGCAGATAGGTGAAAATAAATTCATCAGCAAGAGTGTGATACTCTCTCACCTCAAAACCTACAACCTTTACTACGAGGGTGAGGCTCTGCAGCTGCGCCACAGAGAGGAGGAAGGAGAGCTGATCATCGAGGGCTTACTGAACATCTTCTGGGGACTGCAGCGTCCAATCAGACTGCAGATGCAAGATGGCAAGGAGCCAATCAGACTTGGTCCTTCCCCCGAGGGGCATGGCACAAGCCCTGCAGAGTCTGAAAAAGACCAAATAAAACTGGCTCCACCCACCATTGAGGTCACAGGCCCTGTGGACCAATCAAAAGACAACAACAGTGAGACAGCAGAAGAGACAGGTGAGGAGGAGGAGTCAGCACACCTGCAGAGGACCAGGAGTGATGTGGGTGTGAGGAGACTTGGTGGGCGGACAGCACTTGGCAACCATCGACGAATCAGGAGACACAGATGTTCATTTAATGGGCATTACTATAACCACAAGACGGCAATTTTCACGCCAGCATATGGCTCCGTCACTAACGTTCGCATCAACAGCTCAATGACGACGGTGCATGTTCTTCGGGTCCTTCTCAACAAGTTTAAGATCGAGAACAGTCCAGAAGAGTTCAGTCTTTTCCTCCTGCACACCAGCGGAGAGCGGGTCCAGCTAAAGCGAGATGATCACCCGCTGTCCGTTCGGGTTCTGCAGGGTCCGTGTGAACAGGTCAGCAAAATCTTTCTAATGGAACCGGACCAGGTGGAGGAGATCACCTACGACgtggCGCAGTATATTAAGCTGGAGATGCCAGTGCTGCAGAGTTTTATTAATAAGCTGAAGGAGGAGGAGCTTAGAGAGATGAACAAACTGAAACAGAGgtacaGTGATATGCGCAGTGTTATTAAGAAGCACATGCAGAGTTTGGCGGGTGAGACGGTGTGTTAGAGTCTACAtactgtctctgtctttctcatcATTCttattaatatcattttaaGAGATTTACACAACTACCATTTACCCCGTAACAAATGTTCATACATAGTTTAATACTTGTTTAATTACAGTTATTAATCAGGTCAAACACACctaacaaataattaataagcagtaataacttattaattaaaacgacaactgcattttacattcatttacagtcagtgttagataaatacagtatatttttctaCAGATGTATGAATCATTGTGCAGAATTATATTTGTAagtgtaatataatattcaaaactgtaacagtgctggtgatgttatgttgtgtacagtgtgtaattTTAAGTGACAGTGTATAGTAAGTTTCTTGGCTTATGTATAACGATGGtactttttaattgttaataaaatatatttatataaata
>XM_007254961.3
AAAAAATTGCCTCCACTTCCTGTGTGAACACTTCTTAGGGAGGggccactcacacacacacacacgttcttCTGGACAGATCGATTCCTCGGTACCGGTTCTGGTTCTGCTGCACCTGTTACCCACTATCTTCCTCCGGGTTCGAGCGTCTGGCCTACATACTGCAGTGTTCTGGTGGTTCTGGTGGCAccaggtggtggtggtgataatGGCTGGTGAGCAGGACTCGGAGCAGGTGCAGATAGGTGAAAATAAATTCATCAGCAAGAGTGTGATACTCTCTCACCTCAAAACCTACAACCTTTACTACGAGGGTGAGGCTCTGCAGCTGCGCCACAGAGAGGAGGAAGGAGAGCTGATCATCGAGGGCTTACTGAACATCTTCTGGGGACTGCAGCGTCCAATCAGACTGCAGATGCAAGATGGCAAGGAGCCAATCAGACTTGGTCCTTCCCCCGAGGGGCATGGCACAAGCCCTGCAGAGTCTGAAAAAGACCAAATAAAACTGGCTCCACCCACCATTGAGGTCACAGGCCCTGTGGACCAATCAAAAGACAACAACAGTGAGACAGCAGAAGAGACAGGTGAGGAGGAGGAGTCAGCACACCTGCAGAGGACCAGGAGTGATGTGGGTGTGAGGAGACTTGGTGGGCGGACAGCACTTGGCAACCATCGACGAATCAGGAGACACAGATGTTCATTTAATGGGCATTACTATAACCACAAGACGGCAATTTTCACGCCAGCATATGGCTCCGTCACTAACGTTCGCATCAACAGCTCAATGACGACGGTGCATGTTCTTCGGGTCCTTCTCAACAAGTTTAAGATCGAGAACAGTCCAGAAGAGTTCAGTCTTTTCCTCCTGCACACCAGCGGAGAGCGGGTCCAGCTAAAGCGAGATGATCACCCGCTGTCCGTTCGGGTTCTGCAGGGTCCGTGTGAACAGGTCAGCAAAATCTTTCTAATGGAACCGGACCAGGTGGAGGAGATCACCTACGACgtggCGCAGTATATTAAGCTGGAGATGCCAGTGCTGCAGAGTTTTATTAATAAGCTGAAGGAGGAGGAGCTTAGAGAGATGAACAAACTGAAACAGAGgtacaGTGATATGCGCAGTGTTATTAAGAAGCACATGCAGAGTTTGGCGGGTGAGACGGTGTGTTAGAGTCTACAtactgtctctgtctttctcatcATTCttattaatatcattttaaGAGATTTACACAACTACCATTTACCCCGTAACAAATGTTCATACATAGTTTAATACTTGTTTAATTACAGTTATTAATCAGGTCAAACACACctaacaaataattaataagcagtaataacttattaattaaaacgacaactgcattttacattcatttacagtcagtgttagataaatacagtatatttttctaCAGATGTATGAATCATTGTGCAGAATTATATTTGTAagtgtaatataatattcaaaactgtaacagtgctggtgatgttatgttgtgtacagtgtgtaattTTAAGTGACAGTGTATAGTAAGTTTCTTGGCTTATGTATAACGATGGtactttttaattgttaataaaatatatttatataaata

Function

symbol description
rassf2 Enables protein kinase activity. Involved in protein stabilization. Acts upstream of or within positive regulation of JNK cascade; positive regulation of apoptotic process; and regulation of protein phosphorylation. Located in several cellular components, including Golgi apparatus; kinetochore; and nucleoplasm. Part of protein-containing complex.

NR:

description
PREDICTED: ras association domain-containing protein 2 isoform X1

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG:

id description
K09851 RASSF2_4; Ras association domain-containing protein 2/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254960.3 True 1630 mRNA 0.45 10 18571229 18577765
XM_007254961.3 False 1601 mRNA 0.45 10 18571229 18577765

Neighbor

gene id symbol gene type direction distance location
LOC103025514 NA coding downstream 1167 18565701 ~ 18570062 (-)
LOC103023096 ddhd2,LOC108440555,LOC107678050,LOC107553701,LOC107720719 coding downstream 89113 18459004 ~ 18482116 (-)
tacc1 NA coding downstream 122026 18405003 ~ 18449203 (-)
LOC103021760 loxl2,loxl2a,LOC108440557,LOC107720722,LOC107678026,LOC107705082,LOC107687596,LOC107553706 coding downstream 182826 18349905 ~ 18388403 (-)
LOC103046908 NA coding downstream 253667 18307853 ~ 18317562 (-)
LOC103026456 kcnip3,kcnip3b,LOC107092684,LOC106535652,LOC103473704,LOC103026456,LOC108440143,LOC107678047,LOC107572711,LOC107720714 coding upstream 1986 18579751 ~ 18595814 (-)
pcna pcna,LOC107658578,LOC107583397 coding upstream 26779 18604544 ~ 18609133 (-)
LOC103045069 bmp1,LOC108440159,LOC105014870,LOC107710833,LOC107661342 coding upstream 71021 18648786 ~ 18684766 (-)
LOC103045381 LOC108440153 coding upstream 108905 18686670 ~ 18691097 (-)
LOC103045990 aak1b,LOC108440145,LOC107583399 coding upstream 168483 18746248 ~ 18791052 (-)
G177596 NA non-coding downstream 5916 18561352 ~ 18565313 (-)
G177589 NA non-coding downstream 20362 18549010 ~ 18550867 (-)
G177584 NA non-coding downstream 33542 18534885 ~ 18537687 (-)
G177559 NA non-coding downstream 222575 18348298 ~ 18348654 (-)
G177555 NA non-coding downstream 232397 18338544 ~ 18338832 (-)
LOC111195060 NA non-coding upstream 42434 18620199 ~ 18624721 (-)
G177605 NA non-coding upstream 48524 18626289 ~ 18626532 (-)
G177607 NA non-coding upstream 51534 18629299 ~ 18629554 (-)
G177609 NA non-coding upstream 54649 18632414 ~ 18632670 (-)
G177626 NA non-coding upstream 159099 18736864 ~ 18740579 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 39594 18485642 ~ 18531635 (-)
G177568 NA other downstream 168221 18397582 ~ 18403008 (-)
G177526 NA other downstream 396704 18171849 ~ 18174525 (-)
stoml2 stoml2,LOC107686459,LOC107688641,LOC107569390,LOC106563216 other downstream 2780585 15780555 ~ 15790644 (-)
LOC111194989 NA other downstream 3005766 15528296 ~ 15565463 (-)
LOC111195059 NA other upstream 37127 18614892 ~ 18618612 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other upstream 309263 18887028 ~ 18934600 (-)
G177704 NA other upstream 513381 19091146 ~ 19092146 (-)
LOC103035567 LOC103035567,LOC108425166 other upstream 542021 19119786 ~ 19128123 (-)
LOC111194984 sh2d4a other upstream 1160884 19738649 ~ 19739313 (-)

Expression


Co-expression Network