LOC103026456 (kcnip3,kcnip3b,LOC107092684,LOC106535652,LOC103473704,LOC103026456,LOC108440143,LOC107678047,LOC107572711,LOC107720714)


Basic Information

Item Value
gene id LOC103026456
gene name kcnip3,kcnip3b,LOC107092684,LOC106535652,LOC103473704,LOC103026456,LOC108440143,LOC107678047,LOC107572711,LOC107720714
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 18579751 ~ 18595814 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254962.3
TCCTGCGCGTGCAGTGAGAGATCAGAGAGCGCGAGCGGAGTGGCGGAGCGCGAGACCCCTGGACAGCATGCAGtctgatGGTCAGAGAGTGGACGCTCTGCCGGATGGAGCCCCCAGTGGGCCGCAGGAGGGAAAATGGCAGAAACCTCGGATCTCCCGCAAGAGTTTAATGAAGTGCTGCCTGGTGAAGTGGATCATCAGCAACACCGCACCACAGGgaccagATGACAGCAGTGATGGGGAGCTGGAGCTGTCGATGGTGAGACACCAGCCGGAAggtctggaggagctgcaggctCAGACCCAGTTCACCAGGAAGGAGCTGCAGTCTCTCTACAGGGGCTTCAAAAACgAGTGTCCCAGTGGGTTGGTTGATGAGGAAACCTTTAAGACCATCTACTCCCAGTTCTTCCCTCAAGGAGATGCGACAACATATGCTCACTTCCTCTTCAATGCCTTTGATGTGGACCGGAATGGCTCCATACGTTTCGAGGACTTTGTGATTGGTCTGTCAGTTTTGTTGCGCGGGTCTGTAACGGAGAAACTGCGCTGGGCCTTTAATCTGTACGATATTAATAAGGATGGATACATCACTAAAGAGGAAATGCTGGCCATCATGAAGTCCATATATGATATGATGGGGCGCTACACTTCCCCCAGCGTCAAGGAGGACGCTCCGTTCGAACACGTGGAGAAATTCTTCCAGAAGATGGACAGGAACAGAGATGGCGTGGTGACCATTGAGGAGTTCATCGAGACGTGCCAAAAGgACGAGAGTATAATGAGCTCCATGCAGCTGTTTGAGAACGTTATCTGAACTTCGCTGGATGTCCGAAGTGTTTTCCCTCCAAGTGGAGCTGTTGGAGACCCCAACCCACTGGGGATTTCCCACTGCATGAGAATgaagataaagaataaaatgataCTTTGTTTGAAAATTATATCTACAGATTTCCTTAAACAGCTAAAAATTGAACGACCTTCAGTTTTACCTAATGCTAATATGGCTAAAATGTGATGGATGCTAATGTACACCAGTTAGCATCATGCCAAATAATAAATACACCAGAGCTACAAAgctaatttatatttaatatttaatttatacataatataattatGAGTGAATATAGTTATTAACAATGCTGGCATACTTCAATCTATATTCTAGATTCTGTATAACAGTTTAGAGTTTTAACTACAATATCAGGATCTACATAatcaattgtaaaaaaaaaaaactagagttTAGTTTCTGTAGAAACTCCACTGcaagtgtgattgcagtgctgattATTTAGGGGGACAAAAAACaagagatgtaaaaaaaaacgacaaatagagGAGTACATCAAGTTTGGTTGATTTAGGAATACAGAAACTTTGTGGCTTGATCGTATGTGAAAATTAATGGGAGTAAGTAAGAGCAAGGaggcatgaaaaaaacaaaaggattTCCAAGCCCAATGCATGTTTTAGAGTTGGAATGTAGTCAATATCTcctactgcaatcacactaatttACTCCAAAATTTTACCACAGTGTGTCAATTTGAATTtgcagttagcatcatgctaagtGGTGGCTTATTAGCTTTCATTGCTTCCTTTGCTAAATAGCAATATTACTGTTGTAGCCCTGGTGCgaatctaaataaataacctTTAggcattcaaatatttaaactaataaatTATGGGATGGATTTTAGGCtccttattattgtatataagcTTCTAGTTCTATCGGTTAGTTAACTAGCTGCATTAGCTTCAGTGCTAAATCTGAAGAAACAAACCACACTAGTCATGTTAAATTGACTATTTGAAGTAAATGGTGGAATATATGATGTATATAAGACTTTATTTGAACTATCACTTTAACATAAGGAAGATGTTTTGGGTTCCACAGAGACTAAGATGTCAGTACGCTGTTAGCGGATGCTGTTAGCAGTTGCtagctgtgtgtttgtatatatctGTAAATACTGAGATTATCTGGATGTATAACATCAAATAAACAAGCGATTGCATGCTTAAACAAGCGATTGCatgcaatgcaatgcatttCA
>XM_007254963.3
TCCTGCGCGTGCAGTGAGAGATCAGAGAGCGCGAGCGGAGTGGCGGAGCGCGAGACCCCTGGACAGCATGCAGtctgatGGTCAGAGAGTGGACGCTCTGCCGGATGGAGCCCCCAGTGGGCCGCAGGAGGGAAAATGGCAGAAACCTCGGATCTCCCGCAAGAGTTTAATGAAGTGCTGCCTGGTGAAGTGGATCATCAGCAACACCGCACCACAGGgaccagACAGCAGTGATGGGGAGCTGGAGCTGTCGATGGTGAGACACCAGCCGGAAggtctggaggagctgcaggctCAGACCCAGTTCACCAGGAAGGAGCTGCAGTCTCTCTACAGGGGCTTCAAAAACgAGTGTCCCAGTGGGTTGGTTGATGAGGAAACCTTTAAGACCATCTACTCCCAGTTCTTCCCTCAAGGAGATGCGACAACATATGCTCACTTCCTCTTCAATGCCTTTGATGTGGACCGGAATGGCTCCATACGTTTCGAGGACTTTGTGATTGGTCTGTCAGTTTTGTTGCGCGGGTCTGTAACGGAGAAACTGCGCTGGGCCTTTAATCTGTACGATATTAATAAGGATGGATACATCACTAAAGAGGAAATGCTGGCCATCATGAAGTCCATATATGATATGATGGGGCGCTACACTTCCCCCAGCGTCAAGGAGGACGCTCCGTTCGAACACGTGGAGAAATTCTTCCAGAAGATGGACAGGAACAGAGATGGCGTGGTGACCATTGAGGAGTTCATCGAGACGTGCCAAAAGgACGAGAGTATAATGAGCTCCATGCAGCTGTTTGAGAACGTTATCTGAACTTCGCTGGATGTCCGAAGTGTTTTCCCTCCAAGTGGAGCTGTTGGAGACCCCAACCCACTGGGGATTTCCCACTGCATGAGAATgaagataaagaataaaatgataCTTTGTTTGAAAATTATATCTACAGATTTCCTTAAACAGCTAAAAATTGAACGACCTTCAGTTTTACCTAATGCTAATATGGCTAAAATGTGATGGATGCTAATGTACACCAGTTAGCATCATGCCAAATAATAAATACACCAGAGCTACAAAgctaatttatatttaatatttaatttatacataatataattatGAGTGAATATAGTTATTAACAATGCTGGCATACTTCAATCTATATTCTAGATTCTGTATAACAGTTTAGAGTTTTAACTACAATATCAGGATCTACATAatcaattgtaaaaaaaaaaaactagagttTAGTTTCTGTAGAAACTCCACTGcaagtgtgattgcagtgctgattATTTAGGGGGACAAAAAACaagagatgtaaaaaaaaacgacaaatagagGAGTACATCAAGTTTGGTTGATTTAGGAATACAGAAACTTTGTGGCTTGATCGTATGTGAAAATTAATGGGAGTAAGTAAGAGCAAGGaggcatgaaaaaaacaaaaggattTCCAAGCCCAATGCATGTTTTAGAGTTGGAATGTAGTCAATATCTcctactgcaatcacactaatttACTCCAAAATTTTACCACAGTGTGTCAATTTGAATTtgcagttagcatcatgctaagtGGTGGCTTATTAGCTTTCATTGCTTCCTTTGCTAAATAGCAATATTACTGTTGTAGCCCTGGTGCgaatctaaataaataacctTTAggcattcaaatatttaaactaataaatTATGGGATGGATTTTAGGCtccttattattgtatataagcTTCTAGTTCTATCGGTTAGTTAACTAGCTGCATTAGCTTCAGTGCTAAATCTGAAGAAACAAACCACACTAGTCATGTTAAATTGACTATTTGAAGTAAATGGTGGAATATATGATGTATATAAGACTTTATTTGAACTATCACTTTAACATAAGGAAGATGTTTTGGGTTCCACAGAGACTAAGATGTCAGTACGCTGTTAGCGGATGCTGTTAGCAGTTGCtagctgtgtgtttgtatatatctGTAAATACTGAGATTATCTGGATGTATAACATCAAATAAACAAGCGATTGCATGCTTAAACAAGCGATTGCatgcaatgcaatgcatttCA
>XM_022681179.1
CACAATCTGGTTTGGACTGCTGTCATTGAAATTGGATCAAAATCCAGTGTGGTTGTTGATTAAtgtaaattgaataaaaatctGTTTCAACTGCTGTTAAagacactggattaaaattctATTTATGAAACTGGATCAAATAAAACTGGATTTATTTGGATTGCTTTTAGTTAATCTGGATCAAAACCCAGATTGAATCACAACcgataatacttaaaaaaaaattagtgtgGCCCCATTCAGACTTCTACTAATGAACTGATTTGAACTTTTTTTGAGACTGAACTTAAATAGAGCTGACCTGAAATTGGATTCCTGTGGAAGGAAGAACCGGTTTAAAAACCGGTTTGGACTGTAAATAACGGGTATAATCAGCAGTTGTGTGATGATGCACTGATGCAGGGTATGGAGCTGATGGCCGTGGGCGTAGTCATCGTCCTGTTCTACCTGGTTCtgaagcagtttggactgtgggagCCTCTGTCTCTGGATGATGACAGCAGTGATGGGGAGCTGGAGCTGTCGATGGTGAGACACCAGCCGGAAggtctggaggagctgcaggctCAGACCCAGTTCACCAGGAAGGAGCTGCAGTCTCTCTACAGGGGCTTCAAAAACgAGTGTCCCAGTGGGTTGGTTGATGAGGAAACCTTTAAGACCATCTACTCCCAGTTCTTCCCTCAAGGAGATGCGACAACATATGCTCACTTCCTCTTCAATGCCTTTGATGTGGACCGGAATGGCTCCATACGTTTCGAGGACTTTGTGATTGGTCTGTCAGTTTTGTTGCGCGGGTCTGTAACGGAGAAACTGCGCTGGGCCTTTAATCTGTACGATATTAATAAGGATGGATACATCACTAAAGAGGAAATGCTGGCCATCATGAAGTCCATATATGATATGATGGGGCGCTACACTTCCCCCAGCGTCAAGGAGGACGCTCCGTTCGAACACGTGGAGAAATTCTTCCAGAAGATGGACAGGAACAGAGATGGCGTGGTGACCATTGAGGAGTTCATCGAGACGTGCCAAAAGgACGAGAGTATAATGAGCTCCATGCAGCTGTTTGAGAACGTTATCTGAACTTCGCTGGATGTCCGAAGTGTTTTCCCTCCAAGTGGAGCTGTTGGAGACCCCAACCCACTGGGGATTTCCCACTGCATGAGAATgaagataaagaataaaatgataCTTTGTTTGAAAATTATATCTACAGATTTCCTTAAACAGCTAAAAATTGAACGACCTTCAGTTTTACCTAATGCTAATATGGCTAAAATGTGATGGATGCTAATGTACACCAGTTAGCATCATGCCAAATAATAAATACACCAGAGCTACAAAgctaatttatatttaatatttaatttatacataatataattatGAGTGAATATAGTTATTAACAATGCTGGCATACTTCAATCTATATTCTAGATTCTGTATAACAGTTTAGAGTTTTAACTACAATATCAGGATCTACATAatcaattgtaaaaaaaaaaaactagagttTAGTTTCTGTAGAAACTCCACTGcaagtgtgattgcagtgctgattATTTAGGGGGACAAAAAACaagagatgtaaaaaaaaacgacaaatagagGAGTACATCAAGTTTGGTTGATTTAGGAATACAGAAACTTTGTGGCTTGATCGTATGTGAAAATTAATGGGAGTAAGTAAGAGCAAGGaggcatgaaaaaaacaaaaggattTCCAAGCCCAATGCATGTTTTAGAGTTGGAATGTAGTCAATATCTcctactgcaatcacactaatttACTCCAAAATTTTACCACAGTGTGTCAATTTGAATTtgcagttagcatcatgctaagtGGTGGCTTATTAGCTTTCATTGCTTCCTTTGCTAAATAGCAATATTACTGTTGTAGCCCTGGTGCgaatctaaataaataacctTTAggcattcaaatatttaaactaataaatTATGGGATGGATTTTAGGCtccttattattgtatataagcTTCTAGTTCTATCGGTTAGTTAACTAGCTGCATTAGCTTCAGTGCTAAATCTGAAGAAACAAACCACACTAGTCATGTTAAATTGACTATTTGAAGTAAATGGTGGAATATATGATGTATATAAGACTTTATTTGAACTATCACTTTAACATAAGGAAGATGTTTTGGGTTCCACAGAGACTAAGATGTCAGTACGCTGTTAGCGGATGCTGTTAGCAGTTGCtagctgtgtgtttgtatatatctGTAAATACTGAGATTATCTGGATGTATAACATCAAATAAACAAGCGATTGCATGCTTAAACAAGCGATTGCatgcaatgcaatgcatttCA

Function

symbol description
kcnip3b Predicted to enable calcium ion binding activity. Acts upstream of or within endocrine pancreas development. Is expressed in nervous system; neural tube; pancreatic system; and trigeminal placode. Orthologous to human KCNIP3 (potassium voltage-gated channel interacting protein 3).
kcnip3 Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Predicted to be located in cytosol. Predicted to be part of voltage-gated potassium channel complex.

NR:

description
PREDICTED: calsenilin-like isoform X3

GO:

id name namespace
GO:0031018 endocrine pancreas development biological_process
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23855 KCNIP; Kv channel-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254962.3 False 2072 mRNA 0.41 10 18579751 18595814
XM_007254963.3 False 2069 mRNA 0.41 9 18579751 18595814
XM_022681179.1 True 2341 mRNA 0.39 9 18579751 18585092

Neighbor

gene id symbol gene type direction distance location
LOC103025819 rassf2 coding downstream 1986 18571229 ~ 18577765 (-)
LOC103025514 NA coding downstream 9689 18565701 ~ 18570062 (-)
LOC103023096 ddhd2,LOC108440555,LOC107678050,LOC107553701,LOC107720719 coding downstream 97635 18459004 ~ 18482116 (-)
tacc1 NA coding downstream 130548 18405003 ~ 18449203 (-)
LOC103021760 loxl2,loxl2a,LOC108440557,LOC107720722,LOC107678026,LOC107705082,LOC107687596,LOC107553706 coding downstream 191348 18349905 ~ 18388403 (-)
pcna pcna,LOC107658578,LOC107583397 coding upstream 8730 18604544 ~ 18609133 (-)
LOC103045069 bmp1,LOC108440159,LOC105014870,LOC107710833,LOC107661342 coding upstream 52972 18648786 ~ 18684766 (-)
LOC103045381 LOC108440153 coding upstream 90856 18686670 ~ 18691097 (-)
LOC103045990 aak1b,LOC108440145,LOC107583399 coding upstream 150434 18746248 ~ 18791052 (-)
brf2 NA coding upstream 245257 18841071 ~ 18847381 (-)
G177596 NA non-coding downstream 14438 18561352 ~ 18565313 (-)
G177589 NA non-coding downstream 28884 18549010 ~ 18550867 (-)
G177584 NA non-coding downstream 42064 18534885 ~ 18537687 (-)
G177559 NA non-coding downstream 231097 18348298 ~ 18348654 (-)
G177555 NA non-coding downstream 240919 18338544 ~ 18338832 (-)
LOC111195060 NA non-coding upstream 24385 18620199 ~ 18624721 (-)
G177605 NA non-coding upstream 30475 18626289 ~ 18626532 (-)
G177607 NA non-coding upstream 33485 18629299 ~ 18629554 (-)
G177609 NA non-coding upstream 36600 18632414 ~ 18632670 (-)
G177626 NA non-coding upstream 141050 18736864 ~ 18740579 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 48116 18485642 ~ 18531635 (-)
G177568 NA other downstream 176743 18397582 ~ 18403008 (-)
G177526 NA other downstream 405226 18171849 ~ 18174525 (-)
stoml2 stoml2,LOC107686459,LOC107688641,LOC107569390,LOC106563216 other downstream 2789107 15780555 ~ 15790644 (-)
LOC111194989 NA other downstream 3014288 15528296 ~ 15565463 (-)
LOC111195059 NA other upstream 19078 18614892 ~ 18618612 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other upstream 291214 18887028 ~ 18934600 (-)
G177704 NA other upstream 495332 19091146 ~ 19092146 (-)
LOC103035567 LOC103035567,LOC108425166 other upstream 523972 19119786 ~ 19128123 (-)
LOC111194984 sh2d4a other upstream 1142835 19738649 ~ 19739313 (-)

Expression


Co-expression Network