Gene
RNA
| Item | Value |
|---|---|
| gene id | G68765 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000012 |
| NCBI id | null |
| chromosome length | 13770000 |
| location | 765620 ~ 766677 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| PREDICTED: transmembrane protein 127 |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU78353 | False | 473 | lncRNA | 0.45 | 2 | 765620 | 766677 |
| TU78354 | True | 334 | lncRNA | 0.53 | 2 | 765620 | 766538 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000012_00644021_00646785 | NA | coding | upstream | 118545 | 644021 ~ 647075 (+) |
| CI01000012_00593086_00594741 | NA | coding | upstream | 170155 | 592126 ~ 595465 (+) |
| CI01000012_00502185_00516358 | NA | coding | upstream | 248712 | 500151 ~ 516908 (+) |
| CI01000012_00318129_00318595 | NA | coding | upstream | 446202 | 318129 ~ 319418 (+) |
| CI01000012_00194370_00195347 | HCAR1-3 | coding | upstream | 569944 | 193903 ~ 195676 (+) |
| CI01000012_00886127_00889703 | NA | coding | downstream | 118443 | 885120 ~ 890337 (+) |
| CI01000012_00979848_00986445 | NA | coding | downstream | 213171 | 979848 ~ 986745 (+) |
| CI01000012_00991831_01027918 | NA | coding | downstream | 224498 | 991175 ~ 1028035 (+) |
| CI01000012_01054663_01055748 | NA | coding | downstream | 287986 | 1054663 ~ 1058353 (+) |
| CI01000012_01060250_01062758 | NA | coding | downstream | 293508 | 1060185 ~ 1062758 (+) |
| G68753 | NA | non-coding | upstream | 21706 | 743202 ~ 743914 (+) |
| G68750 | NA | non-coding | upstream | 32415 | 732848 ~ 733205 (+) |
| G68740 | NA | non-coding | upstream | 60581 | 703877 ~ 705039 (+) |
| G68731 | NA | non-coding | upstream | 74302 | 690048 ~ 691318 (+) |
| G68726 | NA | non-coding | upstream | 79470 | 685648 ~ 686150 (+) |
| G68771 | NA | non-coding | downstream | 8503 | 775180 ~ 775815 (+) |
| G68795 | NA | non-coding | downstream | 31488 | 798165 ~ 798422 (+) |
| G68804 | NA | non-coding | downstream | 37157 | 803834 ~ 805204 (+) |
| G68811 | NA | non-coding | downstream | 47968 | 814645 ~ 814864 (+) |
| G68894 | NA | non-coding | downstream | 200428 | 967105 ~ 1034619 (+) |
| G68725 | NA | other | upstream | 80764 | 683523 ~ 684856 (+) |
| G68660 | NA | other | upstream | 229667 | 535566 ~ 535953 (+) |
| G68282 | NA | other | upstream | 705088 | 26390 ~ 60532 (+) |
| G70029 | NA | other | downstream | 1855801 | 2622478 ~ 2631385 (+) |
| CI01000012_04424569_04425090 | NA | other | downstream | 3653562 | 4424569 ~ 4425756 (+) |
| CI01000012_04495631_04501066 | NA | other | downstream | 3731776 | 4495631 ~ 4501066 (+) |
| CI01000012_05177587_05180517 | SRSF5A | other | downstream | 4410218 | 5176895 ~ 5180970 (+) |
