pcna (pcna,LOC107658578,LOC107583397)


Basic Information

Item Value
gene id pcna
gene name pcna,LOC107658578,LOC107583397
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 18604544 ~ 18609133 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254965.3
GGTCCGCAGCCATCAAAAGTGCACGGAAAGCGCGCGCAGGAGACGCACTTTCGGAGCCTCGTGGAGCAGGAGGACTGACAGCATCCTCTCGAACTTTGTTCAGCTCTTAGTAGATCATTTATATTGATTGTAGCTGATAAATCAGATCTGCTGCTCTGATTTTTATAAGCACTAACTGAAGCTACAGGGAGCTGCTCTTATTTTTCCTCTGTGTCCGtaaacaaccaaacaaacagCACGATGTTCGAGGCAAGACTTGTGCAGGGCTCCATCCTGAAGAAGGTGCTGGAGGCTCTGAAGGACCTGATCACCGAGGCCTGCTGGGACGTGAGCTCCTCCGGGATCTCCCTGCAGAGCATGGACTCGTCCCACGTGTCTCTGGTGCAGCTCACCCTCCGCAGCGACGGCTTCGACTCCTACCGCTGCGACAGGAACCTCGCCATGGGGGTCAACCTCAGCAGTATGTCAAAGATCCTGAAGTGTGCTGGAAATGAGGACATCATTACTCTGCGGGCGGAGGACAACGCTGACTCTCTGGCTCTGGTGTTTGAGACGCTCAATCAGGAGAAAGTCTCTGATTATGAAATGAAGCTGATGGACTTGGATGTGGAGCAGCTTGGAATTCCAGAGCAGGAGTACAGCTGTGTGGTGAAGATGCCCTCAGGAGAGTTCGCCCGTATCTGCAGAGACCTGTCACAGATCGGAGATGCCGTCATGATCTCCTGCGCCAAAGATGGAGTGAAGTTCTCCGCCAGCGGTGAGCTCGGCACCGGCAACATCAAACTGTCCCAGACCAGCAATGTAGACAAGGAGGAAGAGGCTgTGACTATTGAGATGAATGAACCAGTACAGCTGATTTTTGCTCTGAACTACCTCAACTTCTTCACCAAGGCCACACCCCTGTCCAAAACAGTCACACTTAGCATGTCTGCAGACATTCCTCTTGTGGTGGAGTACAAGATCGCAGATATGGGTCATGTAAAATACTACCTGGCTCCCAAGATCGACGAGGAGTCGTCCTAAACCGTCCACTCGGAAACTGAAGATGCTCCAGCTCTGTGATTCAGAACTTGTCTGCAGAGCTTCTGGGGTGTTTTACTCAGCGCTGGTTCACATGTCTAGAGCCCACGCAACACTGACTGTTCAAACCACGAGAATCCTGGAGATATGACCCAGCAACTCCCATCATTACCCACGGGCTGCAGGGTCTTTACCGGGGGCAGTAATACGGTGGATTGTGTGCTCAGGTGCAGTCTATAGATCCAGTCTGTATTTCAGGTTTTTCAGTTTATCCTCCAAGCCCTTCTCCCTCTTCCCCTCTGCCTACAAGCACTCTGTTTATTCCTCTCATTCCAATATGTAGATAATTGTCTGTCTGTAAATATGCTAATTGGACTCTTCATTCTGTTGCCCTCTAATAAAATCTTTTTGTAATGGA

Function

symbol description
pcna Predicted to enable DNA polymerase processivity factor activity. Acts upstream of or within response to activity and response to bacterium. Located in nucleus. Is expressed in several structures, including anterior neural tube; head; immature eye; nervous system; and pleuroperitoneal region. Orthologous to human PCNA (proliferating cell nuclear antigen).

NR:

description
PREDICTED: proliferating cell nuclear antigen

GO:

id name namespace
GO:0014823 response to activity biological_process
GO:0009617 response to bacterium biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0019985 translesion synthesis biological_process
GO:0006275 regulation of DNA replication biological_process
GO:0070557 PCNA-p21 complex cellular_component
GO:0043626 PCNA complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0030337 DNA polymerase processivity factor activity molecular_function

KEGG:

id description
K04802 PCNA; proliferating cell nuclear antigen

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254965.3 True 1438 mRNA 0.50 6 18604544 18609133

Neighbor

gene id symbol gene type direction distance location
LOC103026456 kcnip3,kcnip3b,LOC107092684,LOC106535652,LOC103473704,LOC103026456,LOC108440143,LOC107678047,LOC107572711,LOC107720714 coding downstream 8730 18579751 ~ 18595814 (-)
LOC103025819 rassf2 coding downstream 26779 18571229 ~ 18577765 (-)
LOC103025514 NA coding downstream 34482 18565701 ~ 18570062 (-)
LOC103023096 ddhd2,LOC108440555,LOC107678050,LOC107553701,LOC107720719 coding downstream 122428 18459004 ~ 18482116 (-)
tacc1 NA coding downstream 155341 18405003 ~ 18449203 (-)
LOC103045069 bmp1,LOC108440159,LOC105014870,LOC107710833,LOC107661342 coding upstream 39653 18648786 ~ 18684766 (-)
LOC103045381 LOC108440153 coding upstream 77537 18686670 ~ 18691097 (-)
LOC103045990 aak1b,LOC108440145,LOC107583399 coding upstream 137115 18746248 ~ 18791052 (-)
brf2 NA coding upstream 231938 18841071 ~ 18847381 (-)
LOC103028676 NA coding upstream 238862 18847995 ~ 18870141 (-)
G177596 NA non-coding downstream 39231 18561352 ~ 18565313 (-)
G177589 NA non-coding downstream 53677 18549010 ~ 18550867 (-)
G177584 NA non-coding downstream 66857 18534885 ~ 18537687 (-)
G177559 NA non-coding downstream 255890 18348298 ~ 18348654 (-)
G177555 NA non-coding downstream 265712 18338544 ~ 18338832 (-)
LOC111195060 NA non-coding upstream 11066 18620199 ~ 18624721 (-)
G177605 NA non-coding upstream 17156 18626289 ~ 18626532 (-)
G177607 NA non-coding upstream 20166 18629299 ~ 18629554 (-)
G177609 NA non-coding upstream 23281 18632414 ~ 18632670 (-)
G177626 NA non-coding upstream 127731 18736864 ~ 18740579 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 72909 18485642 ~ 18531635 (-)
G177568 NA other downstream 201536 18397582 ~ 18403008 (-)
G177526 NA other downstream 430019 18171849 ~ 18174525 (-)
stoml2 stoml2,LOC107686459,LOC107688641,LOC107569390,LOC106563216 other downstream 2813900 15780555 ~ 15790644 (-)
LOC111194989 NA other downstream 3039081 15528296 ~ 15565463 (-)
LOC111195059 NA other upstream 5759 18614892 ~ 18618612 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other upstream 277895 18887028 ~ 18934600 (-)
G177704 NA other upstream 482013 19091146 ~ 19092146 (-)
LOC103035567 LOC103035567,LOC108425166 other upstream 510653 19119786 ~ 19128123 (-)
LOC111194984 sh2d4a other upstream 1129516 19738649 ~ 19739313 (-)

Expression


Co-expression Network