brf2


Basic Information

Item Value
gene id brf2
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 18841071 ~ 18847381 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254969.3
CTTATTAATctttagtttcatttatttgctgTGTATATAAATCTGAGCGTTAGGGCGGAACTAATTATCTGTAGTATGTGGTTTCCGCCCGGAGCGGCCGGTATGTGGACAGTACGCAGGGCGAGCGTAAACATTTTCcgctgtttattattaatttaatatttttgggaTTTCTGGATTTACTATTCTGTACTGAAGCTCCGCGGTGAGCTATGGTGGGCCCCTGTCCTGAGTGCGGGTCAAGTAACGTGGTGGAGGATGATCTGTACTCTCAGAAGCAGTGGGTGTGTGAGGACTGCGGCTCACTGGTATCAGAGGGTGTCTTCACCACCACCCTCAGTGACGAGCAACACAGCCGCACTGTGCCGTATTACGAGAGCACTGAGACCAGCAAGAAACCCTGTCCCAATCTTATTAAAGgtctgatccGGGTGCGGGCTCTGTGTCGGATCCTGCGAGTGCCGGGTGATATGGAGTCGGGGGCTGTCAGTCTGTTTGAGCGAGCTTACGGTAACCCAGCCTTCCTCCAGGTGCGTCTGCAGAAGAAGGAGGTGCTGGGCGGGGCTTGTATTCTTCTCATATGCAGGCAGAACAACCGGCCCGTCACCATGGGCACCATCAGCAACTTGCTGGAGGTGGAGCTAGCTTTTGTTGGTGTGGTTTATCAGGACCTGATCAAAGCTCTGAACATCGAACCCTCAACCGCCACCAGCCTCATCAACatgctggagagctactgctaCGGgTATAAACTCTCTCCTGGGGAGGTGGCGGAGGTGTTTGCAGAGACGCCTCGGCGGCTGGTGGAGCGCAGCACTGCGCTGGCGGAGCTGGCAGCTGATACGTGGCTGGTGACGGGCCGGCAGCCTCTGCCACTCCTCATGGCGTGTGTTTACGTGGCCTGGCAGTCTTTAAAACCAATGGGGCGAATGAAGGTGAGTCTGAATAAATTCTGTGTGATCGGTGGGCTGGGGAAGGAGGTGTGTGGGGCGAGGAAGGACACGGCCCATAAGCGTGTGGTTGAGCTGCGGGACGTCCTGTGTAAACTGGGTAAGGAGCTGCCGTGGCTGAGAGGGGACACTGTGGAGCCTGGCACTGTGGCCAAACTGGTGGATGACATCCTAAAGCACCGGCAGGCCCTGCATCTGAAGGCTATGAGGCATTATGAGGAGGAACTTCAGCTGCAGTTTGGCGATCAGCTGGCCAGCTCCGACTCGTCAGCTCCGGCCACATCTAAAGCAGGTGACAAATCAGAACCGGACCCCTCCCCTCAGTCTGAGCTAAGTCCATCAGAATCCAAGCTGAAGGGGCGGAGCCAGAACCTCAGCACTGTAAATACAACAGAAGTGGGCGGTGAGCCCCCTGCTGGTGAGCTGCACTGGGGGAAGAGACACCTGTTTCTGCCCCCGTCTGTCCGTCCCGACAAGCAGAGGCGAGTCGACCCCCCAGTGCCGGCGGTGACGGGTGATGAGGAGATCTCTGACAGTGAAATCGAGACCTACATCCGCTCGCCGGAGGAGATCCGGAAATACCTGACCGTGCAGCAGAAGCTGAAGGAGGACGGGGACTGATTATCTGTTCTGATTATTGGTTATTGATCAGTGTGAAGTGCTCCAGCAGTTCATTTCAGGTTATTTATTCAGTTGTAAagtttgttattgttgttgttgttttttttgctgttactTGTTGTTTTAATAAGTTGCACTGAGACTAATGATAAAAGTTTGTCAacttttattgattattattactgATTATTTGAAGCTCATGCACTCAGCACTTTATAAAATAACCAGCGAGGGTCAGAACAGGGATGGACGCTTTGTTTTTGGACAATTCCTACAAATTTCGGACCAAATACAGGGAGTTTATACAGGCTATCATTACttgttaaacaatagaagaagaaagaacTGGAACGCCCACAACTGTATGGCTTACACCGGTCTggtgtgtaagttgtgagttgctatcttgtgagtgaggctggtctaggcctgtcacaatatttcTGTTAAACAACTTCTCAACATGgcctcaattttttttcaatcCTTCATTCCAAAAATAGACTGTGATGTGACTGAAACACTAACTCAATTTTTAGAATATTTGTATTTCAATTCcattatgtacatttattttctaaattgaAAAGTCTATAAAGTTTATAAAGTCATGCTCTCTGTTCGCAGCCTGGTTAGTGTCGTCTCGTTGATGTCCTTTCCTGTTTTTTGCTGCTCTGGTTTTACTGGGatcagatttttattatttgtctgACTCAGTAATAATAAACGTCCTGTTCTTCCTCGTCTGAGTGATTAATCTGAGTTAATGGTTTAATTAGTTGGAAAGGTTAAGTGAAGCTCAGCTTTTCATTATGCTTCATTTATTCTTTTcctttatataaaacataagcTGTGCAAACTTTACACAAACGTGCCTGTTTCTATGGCAACCACGTCCAACCTCATTTTATGAATGCTTGTATTATTGGTGCTATTAAAgttctatttttaatta
>XM_022681182.1
ctttgaggacagatctacaCACTCTTGGcctctcagtgtcttcatgagggagagttaCCTGGAATAAATTTCTCAGGgttttgaaggagttcctggaggtgctgaacaatagttgctgcttttccttcacgctgcagcttatcccaaatcacctcaaatcatcaTCTTAGTTCATCAGGTGAGCTATGGTGGGCCCCTGTCCTGAGTGCGGGTCAAGTAACGTGGTGGAGGATGATCTGTACTCTCAGAAGCAGTGGGTGTGTGAGGACTGCGGCTCACTGGTATCAGAGGGTGTCTTCACCACCACCCTCAGTGACGAGCAACACAGCCGCACTGTGCCGTATTACGAGAGCACTGAGACCAGCAAGAAACCCTGTCCCAATCTTATTAAAGgtctgatccGGGTGCGGGCTCTGTGTCGGATCCTGCGAGTGCCGGGTGATATGGAGTCGGGGGCTGTCAGTCTGTTTGAGCGAGCTTACGGTAACCCAGCCTTCCTCCAGGTGCGTCTGCAGAAGAAGGAGGTGCTGGGCGGGGCTTGTATTCTTCTCATATGCAGGCAGAACAACCGGCCCGTCACCATGGGCACCATCAGCAACTTGCTGGAGGTGGAGCTAGCTTTTGTTGGTGTGGTTTATCAGGACCTGATCAAAGCTCTGAACATCGAACCCTCAACCGCCACCAGCCTCATCAACatgctggagagctactgctaCGGgTATAAACTCTCTCCTGGGGAGGTGGCGGAGGTGTTTGCAGAGACGCCTCGGCGGCTGGTGGAGCGCAGCACTGCGCTGGCGGAGCTGGCAGCTGATACGTGGCTGGTGACGGGCCGGCAGCCTCTGCCACTCCTCATGGCGTGTGTTTACGTGGCCTGGCAGTCTTTAAAACCAATGGGGCGAATGAAGGTGAGTCTGAATAAATTCTGTGTGATCGGTGGGCTGGGGAAGGAGGTGTGTGGGGCGAGGAAGGACACGGCCCATAAGCGTGTGGTTGAGCTGCGGGACGTCCTGTGTAAACTGGGTAAGGAGCTGCCGTGGCTGAGAGGGGACACTGTGGAGCCTGGCACTGTGGCCAAACTGGTGGATGACATCCTAAAGCACCGGCAGGCCCTGCATCTGAAGGCTATGAGGCATTATGAGGAGGAACTTCAGCTGCAGTTTGGCGATCAGCTGGCCAGCTCCGACTCGTCAGCTCCGGCCACATCTAAAGCAGGTGACAAATCAGAACCGGACCCCTCCCCTCAGTCTGAGCTAAGTCCATCAGAATCCAAGCTGAAGGGGCGGAGCCAGAACCTCAGCACTGTAAATACAACAGAAGTGGGCGGTGAGCCCCCTGCTGGTGAGCTGCACTGGGGGAAGAGACACCTGTTTCTGCCCCCGTCTGTCCGTCCCGACAAGCAGAGGCGAGTCGACCCCCCAGTGCCGGCGGTGACGGGTGATGAGGAGATCTCTGACAGTGAAATCGAGACCTACATCCGCTCGCCGGAGGAGATCCGGAAATACCTGACCGTGCAGCAGAAGCTGAAGGAGGACGGGGACTGATTATCTGTTCTGATTATTGGTTATTGATCAGTGTGAAGTGCTCCAGCAGTTCATTTCAGGTTATTTATTCAGTTGTAAagtttgttattgttgttgttgttttttttgctgttactTGTTGTTTTAATAAGTTGCACTGAGACTAATGATAAAAGTTTGTCAacttttattgattattattactgATTATTTGAAGCTCATGCACTCAGCACTTTATAAAATAACCAGCGAGGGTCAGAACAGGGATGGACGCTTTGTTTTTGGACAATTCCTACAAATTTCGGACCAAATACAGGGAGTTTATACAGGCTATCATTACttgttaaacaatagaagaagaaagaacTGGAACGCCCACAACTGTATGGCTTACACCGGTCTggtgtgtaagttgtgagttgctatcttgtgagtgaggctggtctaggcctgtcacaatatttcTGTTAAACAACTTCTCAACATGgcctcaattttttttcaatcCTTCATTCCAAAAATAGACTGTGATGTGACTGAAACACTAACTCAATTTTTAGAATATTTGTATTTCAATTCcattatgtacatttattttctaaattgaAAAGTCTATAAAGTTTATAAAGTCATGCTCTCTGTTCGCAGCCTGGTTAGTGTCGTCTCGTTGATGTCCTTTCCTGTTTTTTGCTGCTCTGGTTTTACTGGGatcagatttttattatttgtctgACTCAGTAATAATAAACGTCCTGTTCTTCCTCGTCTGAGTGATTAATCTGAGTTAATGGTTTAATTAGTTGGAAAGGTTAAGTGAAGCTCAGCTTTTCATTATGCTTCATTTATTCTTTTcctttatataaaacataagcTGTGCAAACTTTACACAAACGTGCCTGTTTCTATGGCAACCACGTCCAACCTCATTTTATGAATGCTTGTATTATTGGTGCTATTAAAgttctatttttaatta

Function

NR:

description
transcription factor IIIB 50 kDa subunit

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process

KEGG:

id description
K15197 BRF2; transcription factor IIIB 50 kDa subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254969.3 True 2526 mRNA 0.48 7 18841071 18847381
XM_022681182.1 False 2499 mRNA 0.48 7 18841071 18846591

Neighbor

gene id symbol gene type direction distance location
LOC103045990 aak1b,LOC108440145,LOC107583399 coding downstream 50019 18746248 ~ 18791052 (-)
LOC103045381 LOC108440153 coding downstream 149974 18686670 ~ 18691097 (-)
LOC103045069 bmp1,LOC108440159,LOC105014870,LOC107710833,LOC107661342 coding downstream 156305 18648786 ~ 18684766 (-)
pcna pcna,LOC107658578,LOC107583397 coding downstream 231938 18604544 ~ 18609133 (-)
LOC103026456 kcnip3,kcnip3b,LOC107092684,LOC106535652,LOC103473704,LOC103026456,LOC108440143,LOC107678047,LOC107572711,LOC107720714 coding downstream 245257 18579751 ~ 18595814 (-)
LOC103028676 NA coding upstream 614 18847995 ~ 18870141 (-)
LOC103029209 gpat4,LOC108440151,LOC108277038,LOC107746208,LOC107558124 coding upstream 25736 18873117 ~ 18883171 (-)
LOC103029848 ggt1 coding upstream 147493 18994874 ~ 19005861 (-)
LOC103030174 NA coding upstream 190929 19038310 ~ 19048336 (-)
LOC103031534 NA coding upstream 205610 19052991 ~ 19056252 (-)
G177644 NA non-coding downstream 11784 18827603 ~ 18829287 (-)
G177617 NA non-coding downstream 42937 18743510 ~ 18798134 (-)
G177626 NA non-coding downstream 100492 18736864 ~ 18740579 (-)
G177609 NA non-coding downstream 208401 18632414 ~ 18632670 (-)
G177607 NA non-coding downstream 211517 18629299 ~ 18629554 (-)
G177669 NA non-coding upstream 103471 18950852 ~ 18954940 (-)
G177678 NA non-coding upstream 136431 18983812 ~ 18987415 (-)
LOC111195061 NA non-coding upstream 227866 19075247 ~ 19076916 (-)
G177688 NA non-coding upstream 227994 19075375 ~ 19078334 (-)
LOC103033103 NA non-coding upstream 230190 19077571 ~ 19077976 (-)
LOC111195059 NA other downstream 222459 18614892 ~ 18618612 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 309436 18485642 ~ 18531635 (-)
G177568 NA other downstream 438063 18397582 ~ 18403008 (-)
G177526 NA other downstream 666546 18171849 ~ 18174525 (-)
stoml2 stoml2,LOC107686459,LOC107688641,LOC107569390,LOC106563216 other downstream 3050427 15780555 ~ 15790644 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other upstream 39647 18887028 ~ 18934600 (-)
G177704 NA other upstream 243765 19091146 ~ 19092146 (-)
LOC103035567 LOC103035567,LOC108425166 other upstream 272405 19119786 ~ 19128123 (-)
LOC111194984 sh2d4a other upstream 891268 19738649 ~ 19739313 (-)
G178173 NA other upstream 2444141 21291522 ~ 21295833 (-)

Expression


Co-expression Network