LOC103031534


Basic Information

Item Value
gene id LOC103031534
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19052991 ~ 19056252 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254980.3
AATAGctttattatatatcttatttgtATTGATGAAAgtaaacagtaataaagtacAGGGCCGTGTTTGTGTAGGTTTCAGTAGTGAAGGGAGGAAGGGTAGCTCCCGAATTGGGACAATTTAAATGAGGCAGTTTGGAACACAGCCGGGTTGCCATGATACGCAGTAAACAAAATGCGGCCGATAAAGTTACTGATCTGCAGATTCACCACAAACTCGCCAGAACCAGAACCGAGTCACAGCCTCCAGAACTGAGTTAAAGCCTTTAGAACCGAGTCACAGCCTCCAGAACAGAATTAGAGCCTCCAGAACCGAATTAGAGCCTCCAGAAACGATTTATAACCTCAAGAAGTGAGTTTAAGTCTCCAGAACCAGAACGGAGTTACAGccttcagaaccagaacagagTTACGGCCTCTAGAACTAGAACTGAGTTACAGCCTCCAGAACCAGAAGCAGGACTGAGTTAAAGCCTCCAGAACCAGAACTGAGTCACAGCCTCTAGAAACAGTACCAAGTCATAGCCTCCAGAACTAAATTACAGACACCAGAACTGAGTGACAGCCTCCGGAACTGAGTCACAGccttcagaaccagaaccaaaaCTGAGTTACAGCCACCAGAACCGAGTAACAGCTTTTAAGAAAGGGGTTACAGAATCCTAAAGCGAGTTACAGCCTTCAGAACTGGGTTACAGAATCCAGAACCGAGTTACAGCCTCTAGAAACGAGTTAAAGCAGCTGAACCCAGCTCTGCTGAGCCTGAGACCCACTCTGAACCCCAGAACCAGGTCCAGTTAACTTGGAGCGATGTCTCTCACCAGACTGTGGGACAAGAAGGCGGAGAAGAACGGTGTTCTCCGGACGGTGTTCTCTGTTACTGGTGACCAGTACACTGGAGAGTGGCTGCAGAACCGCAAACATGGTAAGGGAACTCAGGTGTGGAAAAGGGCAGGTGTGGTTTATGATGGTGAGTGGAGGTTTGGGAAGCGGGATGGTTTCGGCACTTTGAGCAAACAGTCGCCACCCTCTAACAACTACGAGGTGATTTACTCAGGAGAATGGAAAAACGACAAGAAGGAGggtTTTGGAATGGAGGTCTACAGCCCCAGCTCATTGTATGAGGGTCAGTGGGTGGAGCATGAGAGAAGTGGCTCAGGCAGGATGTTCTACCCCAATGGAGATGTTTATGAGGGGGAGTGGctgaaggacaaaccacatggACAGGGCGTCCTAACACTTGCAAACGGGAACAGGTATGAAGGAAGCTGGAAAGACGGGAGGAAAAACGGACCCGGTTGCTTTTTCTACCTGGATAAAGGTCAGCTGTACGAGGGGTTCTGGGTGGACGACGTGGCGAAGTGTGGTACGATGTGCGATTTCGGACGAGAGCATGCAGCCACACCCACAGTTATCCCATCCCTCAgGTGCAGCTGCAGGATGCTGAAAGTGTGTTACTGGAGGGAATTGCCGACTGTTCCAACATCGGAGAGCAACACCAGTACGACAAGAGCAGCCCAGAAACACCTGAGTGAAAACACACCTGCTCAACTCACAGTCAGAACCCCCCACCCCATGTCTGATTATCACACACTCTGAACTGAGAGACTGGAAGTTAAAACAGATTATAGctgtatataaacataattataattatgactttaaa

Function

GO:

id name namespace
GO:0120031 plasma membrane bounded cell projection assembly biological_process
GO:0044782 cilium organization biological_process
GO:0030031 cell projection assembly biological_process
GO:0060271 cilium assembly biological_process

KEGG:

id description
ko05016 Huntington disease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254980.3 True 1665 mRNA 0.48 5 19052991 19056252

Neighbor

gene id symbol gene type direction distance location
LOC103030174 NA coding downstream 4655 19038310 ~ 19048336 (-)
LOC103029848 ggt1 coding downstream 47130 18994874 ~ 19005861 (-)
LOC103029209 gpat4,LOC108440151,LOC108277038,LOC107746208,LOC107558124 coding downstream 169820 18873117 ~ 18883171 (-)
LOC103028676 NA coding downstream 182850 18847995 ~ 18870141 (-)
brf2 NA coding downstream 205610 18841071 ~ 18847381 (-)
rhof rhof,LOC108425170,LOC105014892,LOC106568222 coding upstream 7298 19063550 ~ 19072529 (-)
LOC103047211 LOC108425134 coding upstream 43610 19099862 ~ 19106136 (-)
dgcr2 dgcr2 coding upstream 55782 19112034 ~ 19121657 (-)
dusp11 NA coding upstream 72955 19129207 ~ 19133378 (-)
LOC103036397 march5l,LOC103036397,LOC108425180,LOC107689266,LOC107718703,LOC107602066,LOC107588990 coding upstream 101850 19158102 ~ 19162507 (-)
G177678 NA non-coding downstream 65576 18983812 ~ 18987415 (-)
G177669 NA non-coding downstream 98051 18950852 ~ 18954940 (-)
G177644 NA non-coding downstream 223704 18827603 ~ 18829287 (-)
G177617 NA non-coding downstream 254857 18743510 ~ 18798134 (-)
G177626 NA non-coding downstream 312412 18736864 ~ 18740579 (-)
LOC111195061 NA non-coding upstream 18995 19075247 ~ 19076916 (-)
G177688 NA non-coding upstream 19123 19075375 ~ 19078334 (-)
LOC103033103 NA non-coding upstream 21319 19077571 ~ 19077976 (-)
G177685 NA non-coding upstream 53909 19110161 ~ 19159146 (-)
G177717 NA non-coding upstream 88026 19144278 ~ 19147039 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other downstream 118391 18887028 ~ 18934600 (-)
LOC111195059 NA other downstream 434379 18614892 ~ 18618612 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 521356 18485642 ~ 18531635 (-)
G177568 NA other downstream 649983 18397582 ~ 18403008 (-)
G177526 NA other downstream 878466 18171849 ~ 18174525 (-)
G177704 NA other upstream 34894 19091146 ~ 19092146 (-)
LOC103035567 LOC103035567,LOC108425166 other upstream 63534 19119786 ~ 19128123 (-)
LOC111194984 sh2d4a other upstream 682397 19738649 ~ 19739313 (-)
G178173 NA other upstream 2235270 21291522 ~ 21295833 (-)
G178267 grin3a,LOC107710005,LOC107750958 other upstream 2877267 21933519 ~ 21933831 (-)

Expression


Co-expression Network