rhof (rhof,LOC108425170,LOC105014892,LOC106568222)


Basic Information

Item Value
gene id rhof
gene name rhof,LOC108425170,LOC105014892,LOC106568222
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19063550 ~ 19072529 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254986.3
tttattttactttaatagtgGATGTATGGAGCACATGGTACCAGGAtatgttggatcattgacttctgttaaaagttttcaaaaaatatcctgcattttgaaatatcactatatatattGCAGACAAAACAACTAATGTCCATTTTTGCCAATTTCGTGCAGCCCTAACCAGTACCTCAAAGTTGATAGGTGTGTAGATATCTTGTGCGATCTCTCTGACTAGTCAAAAGCATTTTAGCCAGCTTAGCTTAATCAATATGTGCTACTTAGTGGCTCTGTACTTTTCGTGTGTTtattctgataatttattttcttctctagtgttttatatttatattaatctgAGTTAACTGACGCGGCATCACAGAAGGTGATTTATCTCATAATTAACCCTCTGATCCCCAAACACAAATTTAACTTCTGTTTATCCGCTTTGTATTCGGTATGACCATTACTGTGAggaaaatatactaaataataccattacaaatgtattacaaatgtattacacatacacacacacatacatacacacacagaggtgtGAGTTCCATGAAACTGTGGCTCAGTGTTCCCCCGTGTGGCAGAGAGTGGCACTGTGCAGAACACACACCTCACTGAGGGAGGAGACACACACTCATTTTGAACTTAATGATGAGTTTAAACTGTGCTGCCTCGctttcacacacagacacacatacacacacagaccacacacactgGGAGGATACTCTCACACACGCGATGTAGAACTCAGAGAAAGAGGAAGTCGACGGCGGTGTGtatgaaagagtgtgtgtgtgtgagagtgtctgTGAGGTTGTGTCTGTGCTGTACCCCATGAGATGCTCCATGCTGGACTGCTGGACCCGATGACCTTCTGACCCCGAGAGGGTGCTGACCGCAGAGGACAGGATGCAGAACGGTTCGACTGAAACGATGCTCGGCGGTGAGCAGCTGAAATTCGTGATAGTTGGAGATGGTGGCTGCGGCAAAACCTCATTACTCATGGTTTACGCTAAAGGAGACTTCCCCGAGAAATACGCCCCCTCAGTTTTCGAAAAGTACGTAACAACGGTGACTCACGGTGGGAAGGAGATTCAGCTCAACCTGTACGACACGGCAGgtcagGATGATTATGACCGCCTGAGGCCATTGTCCTATCAGAATGCAGATCTGATCCTTATCTGTTATGATGTCACCAACCCCACCAGCTATGAAAACGTTATTATTAAgTGGTACCCTGAGGTTCATCACTTCTGCCGGGATGTCCCTAAGATCCTGATTGGCTGTAAGACGGACCTGCGGAAAGACAAGGAGAAGATGAGAAAACTCAGAGCGGTCGAGCAAGAGCCAATCACCTACACACAGggGGAGGAGACGCAGAAGCAGATGAACGCTGAACTTTATCTGGAATGTTCGGCCAAATACAGAGAAAACGTGGAGGACATTTTCAAAGAAGCGACAAAACTCGCAATGACGATGCGACGGAAAGCCAGAAAAGCACGAAAAAAACGGAAACCCTGCTCCATCCTGTAAAACGGAAAATCCTGGAATCTTCAGGAACGTCATAAAGTTTACAAAACTTTTAGACACATGCAGGAAATTTATGCAGCTTTAAAGAACCTTTCGGAACATCTGAGGAACATTCAGACTCCTGAATGTATGAAGGCTTAGAATGTATATTCTTTTATAATAACAtcttgttattttattgttatttttttgcacaGGGATATAGATTATTATAATGAGCAGCCAGTGTTCTTGCGGTGCTAAAGGGCGGAGCTTGTTCACTGGGTGGGGCGGTCACTCGGGTCAGTGGAGGGGTCTGCTGATCTTGCTGCTCCTCAGTTACAGTGCTGTCCATTACAAACTGTCTCCATAGTAACTGTTTATGTACACAGTGATGCTCCACCCACAAATGCACACCAATGCGGCTGCTGTTAACGGTTAAGGTAATGTTTACGTAAAAGGTCAGGATACCTCGCAGCAGGAGATATGGACGGATTGGTGGGCGGAGACTAAAAGGGGAGTTACAGTAAATGCTGTGATGGAAAACTGGAGTGTTGCATCATTCAGCCAATCACTGCACAACAGATCATGTCCACCAGAAGAGGATGAACTCTTTAATTACTCTGTAATTATTCAGAGATTATTCggtaattattttaaatctgaTTCAGTGCCATATTATAGTTTCTTTGTATTTAGGGGCAGAGTGATGTCACTCTCAGTAGCAGAGCGGAAGCTGTCGGGACTACTTCCTACTGCAGTGCGAATTTGAGGAACGAAAAACATGATTTCAAAACTGGAGACGCCTTAACAGatttttctctggttttgttGCAGTCTGATCAGTTTAATAGGGAagagattaaataaatatttgttttaaaattaaagagCACAGTGTTGTTTATAAA

Function

symbol description
rhof Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including cytoskeleton organization; regulation of actin cytoskeleton organization; and regulation of cell shape. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and cytoskeleton. Is expressed in macrophage and yolk syncytial layer. Orthologous to human RHOF (ras homolog family member F, filopodia associated).

NR:

description
PREDICTED: rho-related GTP-binding protein RhoF

GO: NA

KEGG:

id description
K07872 RHOF, RIF; Ras homolog gene family, member F

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254986.3 True 2426 mRNA 0.43 6 19063550 19072529

Neighbor

gene id symbol gene type direction distance location
LOC103031534 NA coding downstream 7298 19052991 ~ 19056252 (-)
LOC103030174 NA coding downstream 15214 19038310 ~ 19048336 (-)
LOC103029848 ggt1 coding downstream 57689 18994874 ~ 19005861 (-)
LOC103029209 gpat4,LOC108440151,LOC108277038,LOC107746208,LOC107558124 coding downstream 180379 18873117 ~ 18883171 (-)
LOC103028676 NA coding downstream 193409 18847995 ~ 18870141 (-)
LOC103047211 LOC108425134 coding upstream 27333 19099862 ~ 19106136 (-)
dgcr2 dgcr2 coding upstream 39505 19112034 ~ 19121657 (-)
dusp11 NA coding upstream 56678 19129207 ~ 19133378 (-)
LOC103036397 march5l,LOC103036397,LOC108425180,LOC107689266,LOC107718703,LOC107602066,LOC107588990 coding upstream 85573 19158102 ~ 19162507 (-)
LOC103047514 NA coding upstream 109720 19182249 ~ 19185669 (-)
G177678 NA non-coding downstream 76135 18983812 ~ 18987415 (-)
G177669 NA non-coding downstream 108610 18950852 ~ 18954940 (-)
G177644 NA non-coding downstream 234263 18827603 ~ 18829287 (-)
G177617 NA non-coding downstream 265416 18743510 ~ 18798134 (-)
G177626 NA non-coding downstream 322971 18736864 ~ 18740579 (-)
LOC111195061 NA non-coding upstream 2718 19075247 ~ 19076916 (-)
G177688 NA non-coding upstream 2846 19075375 ~ 19078334 (-)
LOC103033103 NA non-coding upstream 5042 19077571 ~ 19077976 (-)
G177685 NA non-coding upstream 37632 19110161 ~ 19159146 (-)
G177717 NA non-coding upstream 71749 19144278 ~ 19147039 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other downstream 128950 18887028 ~ 18934600 (-)
LOC111195059 NA other downstream 444938 18614892 ~ 18618612 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 531915 18485642 ~ 18531635 (-)
G177568 NA other downstream 660542 18397582 ~ 18403008 (-)
G177526 NA other downstream 889025 18171849 ~ 18174525 (-)
G177704 NA other upstream 18617 19091146 ~ 19092146 (-)
LOC103035567 LOC103035567,LOC108425166 other upstream 47257 19119786 ~ 19128123 (-)
LOC111194984 sh2d4a other upstream 666120 19738649 ~ 19739313 (-)
G178173 NA other upstream 2218993 21291522 ~ 21295833 (-)
G178267 grin3a,LOC107710005,LOC107750958 other upstream 2860990 21933519 ~ 21933831 (-)

Expression


Co-expression Network