dgcr2 (dgcr2)


Basic Information

Item Value
gene id dgcr2
gene name dgcr2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19112034 ~ 19121657 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254987.3
AAGCTGGTGGTGGAGAGCGCAGCCATCTTGTTGTGTTTTGGGCCGATCTGGAGCTGCGGAGAAAACCTACAAACACCCACCCTAAACACCCACCTAACAAACACCCACCTAACACCTGCACCAACAAACACCCACTCCATTTGCAGGCGGTACCAGCGGAACCGGACTCGCGGTGTTCCGGGGAGCTCCAGGCGTCAGGCGGAGGGCCCTCTCTCCGCGGCCGCTTCTGTCCTCCGGAGCCGCGGTATGAGCGCTAGATGTGGGGGAAGGCGCGCTGCACCGCCCCGCTGCTGCTCATCGCGCTGCTGGGCGCCATCAACACGGACCCGCCGGGCACAGGCCGGCGGTTAGCTGTGGCCCGGCTGCTCTCAGagcagcgCTGTAATGCAGGGCAGTTTGCGTGTCGCAGTGGGAAGATGCAGTGTATCCCACTGGAGTGGCAGTGCGACGGCTGGACTGCCTGCGAGGACAAAAGCGATGAACTTGACTGTCCACCGATGAAGGAGGCACGCTATCGCTATGGAAACACCTTTGACCAGACGGAGGAAGTAATGGGGGTGGCACAGCCGGTGCGCTTCAACAAGAAGTGCCCGAGCGGGTGGCATCACTATGAGAAGACGGCGAGCTGTTATAAAGTGTACCTGAGGAAGGAGAATTACTGGCAGGCGGTGGACACGTGCCAGCGGGTGAACGGATCTCTCGCCACCTTCGTCACCAATGAGGAGCTGCAGTTCATCCTGAGGATCGAGGTCGACTTCGACGAGAATGTGTGCGAACGCAAAGACCAGTGCAAtttcTGGGTGGGATATCAGTACGTCATCACTAATCAGAGTCACTCTCTGGAGGGCCGATGGGAGGTGGCCTATAAAGgTTCTCTGCAGGTGTTCCTCCCCCCAGAGGGTCTGACGGGTTTCGCGGAGGTCGGCTCCACACAGGAGAGCGTGTTTTGCGCTCAACTTCAACGGTTCCAGAACAAGAACATCAACGAACACGGACTGCACAGCTGGCATGCAGAGAACTGCTACCAACAATACCCCTTCCTCTGCAAGAGGAgACAGACGTGTGTGGATATTAAGGATAACGTGGTGAGTGAGGGGTACTACTTTACGCCTAAAGGAGATGATCCATGTCTGAGCTGCACCTGCCATGATGGAGAGCCGGAGATGTGTGTGGCGGCTCTGTGCGACCGGCCACAGGGATGCACACACTTTCGCAAAGACCCCAAAGAGTGCTGCAAGTTTACCTGCCTTGacccagatgGCAGCAGTCTGTTTGACTCCATGGCGAGTGGGATGCGTCTGATTGTCAGCTGTATCTCGTCGTTCCTAATCCTCTCGCTACTGCTCTTCATGGTGCATCGGCTGAGGCAGCGACGCCGAGAGAGGATCGAGACTCTGATTGGAGGAAACCTGCATCACTTTAATTTGGGTCGACGTGTGGCGGGTTTTGATTACGGTCCGGACGCGTTTGGGACAGGACTGACGCCACTTCACCTGTCGGACGATGGAGAGGGTGGGGCTTTTCATTTCCAGGAGCCGCCGCCTCCTTACGCTGCATACAAATACCCAGACATCCAGCACCCAGATGACCCGCCCCCTCCGTATGAGGCGTCAATAAACCCAGACAGCATCCTCTACGTGGATCTCTcCCGGACCGGATTGAACCTATCCTCCCCCCAGATGGTTGGAGATGTGAGCGGTCTCTGCAGGCCTCTCCCAGTCCCGCCCCCAGCTCCGCCTCCGAGACCAGAACATGCCCTCGAGCAAAGAGCGGAATCCATTGACAGCAGCACCCTGCTGGTGGCCCCAGACACGCCCACAGAGATGCATGACATCACCCAGGGCTCCACCCATGACCCCTCCAGTCCCACCTCCCTCAGCACAGTGGTGTGAGGAGCAAGAGGGGTGGGGCTTTGGGGGCGGAGCTTGAGAACTGTATGAGTGACTGGTCTATTGACGGTGCAGGTGAAGAAAACCTGAGGGCTcaatttaaaaacactaaaaactccAACACTAGAGCATGATGGGATTAGGGAGGGGCGGGAGGCATGGCCTCCGGCTCAATTAACGGTTAGCGTGTAAATACAGTCGTACAGTCACTGCTCCTTAattttgaggtttttttttcattagttttttGTCTGAGCATGTGGCACTGCGCCCTCTGCTGGACCCCAACAGATAACGTTCTGGAGTGTGGTTCTAAACCTGGATCATTTTCTTTCCTGCTCTGTCCGGACCGACCCGAAACGACCTTGAACATCAGGCGCACCGTAAACACTAACGCTGACCCTTTTGCCTCTCGGACCCTCACCCGACCCCTGCTCTCCTACACCAGCATAGCCCCGCACCAAGGCAACCCGGTTCTGGAGCAGAGCGGTTCTGGAGCAAAGTGGTTCTGCTGCGTCTCTTTCCTCATCACTTTCTCCTCAGGTGAAGAGCACAGTGGGATTGTGGGTAGGCAGGTGGGACTGGGCTGGTAATGAATGCAGGTATGAATTTAACACTGTAGCAGTGCAGCATCACTGCAGGAACACGCCCTTCATCGCTGCAGTTCTGGATCTCCTGGACCTTTGTTTTGGATGTAGATCTTTGGAGTTTTGGATCCTGATTTTTAGGTTCTGGAGATCTGGTTCTGAATATTAGGTTCTGAAGTTTTGGTTCTGGCAGAGATCTGGAGGAATATGAAGGCTGGAACTCTAATTAGAACATGAGCTCCTTTCAGTGCATGTTCTGGATCTTTAGAAACCAAGTCAGATCAGAACCTGAGAAGTCACTGAGGGGTTCACTGTTGATGCGTGACTGCGCTGTACAAGGTTTTGCTTcagtttgtctgtgtgtgtgtgtgtgtagtgtgagtggtagtgtgtgcgtatgtataaatgtgtgagtatgtgtgtgta

Function

symbol description
dgcr2 Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in adaxial cell; polster; and retina. Orthologous to human DGCR2 (DiGeorge syndrome critical region gene 2).

NR:

description
integral membrane protein DGCR2/IDD-like isoform X5

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254987.3 True 2902 mRNA 0.55 11 19112034 19121657

Neighbor

gene id symbol gene type direction distance location
LOC103047211 LOC108425134 coding downstream 5898 19099862 ~ 19106136 (-)
rhof rhof,LOC108425170,LOC105014892,LOC106568222 coding downstream 39505 19063550 ~ 19072529 (-)
LOC103031534 NA coding downstream 55782 19052991 ~ 19056252 (-)
LOC103030174 NA coding downstream 63698 19038310 ~ 19048336 (-)
LOC103029848 ggt1 coding downstream 106173 18994874 ~ 19005861 (-)
dusp11 NA coding upstream 7550 19129207 ~ 19133378 (-)
LOC103036397 march5l,LOC103036397,LOC108425180,LOC107689266,LOC107718703,LOC107602066,LOC107588990 coding upstream 36445 19158102 ~ 19162507 (-)
LOC103047514 NA coding upstream 60592 19182249 ~ 19185669 (-)
inip inip,LOC107658659,LOC107558675,LOC107571239 coding upstream 89223 19210880 ~ 19213378 (-)
lin54 lin54,LOC107744261 coding upstream 98177 19219834 ~ 19235608 (-)
G177688 NA non-coding downstream 33700 19075375 ~ 19078334 (-)
LOC103033103 NA non-coding downstream 34058 19077571 ~ 19077976 (-)
LOC111195061 NA non-coding downstream 35118 19075247 ~ 19076916 (-)
G177678 NA non-coding downstream 124619 18983812 ~ 18987415 (-)
G177669 NA non-coding downstream 157094 18950852 ~ 18954940 (-)
G177717 NA non-coding upstream 22621 19144278 ~ 19147039 (-)
G177728 actr1b,actr1,LOC108425179,LOC103036907,LOC107588989,LOC107658603,LOC107602067,LOC106563059 non-coding upstream 39960 19161617 ~ 19164767 (-)
G177729 acty,LOC103036907,LOC108425179,LOC107658603,LOC106563059,LOC107588989 non-coding upstream 44433 19166090 ~ 19168529 (-)
G177742 kiaa1958 non-coding upstream 78892 19200549 ~ 19202732 (-)
G177735 NA non-coding upstream 92649 19214306 ~ 19216110 (-)
G177704 NA other downstream 19888 19091146 ~ 19092146 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other downstream 177434 18887028 ~ 18934600 (-)
LOC111195059 NA other downstream 493422 18614892 ~ 18618612 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 580399 18485642 ~ 18531635 (-)
G177568 NA other downstream 709026 18397582 ~ 18403008 (-)
LOC111194984 sh2d4a other upstream 616992 19738649 ~ 19739313 (-)
G178173 NA other upstream 2169865 21291522 ~ 21295833 (-)
G178267 grin3a,LOC107710005,LOC107750958 other upstream 2811862 21933519 ~ 21933831 (-)
G178426 NA other upstream 3333840 22455497 ~ 22456779 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other upstream 3379661 22501318 ~ 22509783 (-)

Expression


Co-expression Network