LOC103035567 (LOC103035567,LOC108425166)


Basic Information

Item Value
gene id LOC103035567
gene name LOC103035567,LOC108425166
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19119786 ~ 19128123 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254995.3
GATTGGCGGGAGCGCGCTGGTCAATTACGTCATGCCTTGATCCCCAAACAGCGCGCGATGGCGCGGCGGAACGGCTGATCGGCGGCGCGAGGAGCGGTAAGCCCGGAGCAGCAATGAAGGCGGGGGCGTCGTCCATGTGGGCGTCGTGCTGCGGGTTGCTAAATGAGGTGATTGGTACCGGGTCGGTGCGCGGGCAGCAGCCGGGGTTTGGTGGAGCTGCCGGACCTTTCCGCTTCGCACCGAGTGCCGGGTACTCCACCTACCCCCCGACCCCCAGCCCAACCGCAGCCAACGCTGCCGCCGGCCTGGTGTGTAAAGCCTGTGGACTTGCCTTCTCCGTCTTCAGACGCAAGcatGTGTGTTCGGACTGTAAGAAGAGTTTCTGCTCACTGTGCTCAGTGCTGCAGGAAAACCTGCGCCGTTGTGTTACCTGTCACCTGCTGTGGGGAACAGCGTTCCAGCGGCGGCGTTTGATGCGTCTGCGTGTGAAGGACCTGCGGCAGTACCTACGTCTGCGCAACATCAGCACCGACACCTGCAGGGAGAAGGAGGACCTGGTGGAGCTGGTGCTCAGACATCTGGGGGCGGAGCTTCAGCTACCAGAGGACCAGGAGGatcaggaggaagaggaagaagaggaggaagaggaggaggtggCATCAGACAGCCTGCACCTAGCCCCGCCCACAGACCTTTCCTCACCCCCTGCAGCACGCTCCACCTCTCAGCAGTCTGTCTCTGCACTTTCAGTCTCCGCCTCTCAGGGAGAAACACCCAGTCCCAGCAACAGCTCAGGAACCAGCCAGgaacAGGGCGACAGTGCGTCTGTCTCTTTGCTGACCCTGGAACCCAGTGAACGTTTACTAGAGTCCAGTCCGGTGGTGCAGCGGCGGGCGCGGGCGTCTCTCTCTGACCTGGCGCGGGAGGAGGATATCGAGGTGCTGACGGTTCGGCAGCTAAAGGAAATCCTGGCGCGGAACTTTGTAAATTTCTCGGGATGCTGTGAGAAGTGGGAACTGGTGGAGCGAGTTCACCGACTTTACCGAGAGAGCCAGATCAACCGCATCTCCCtagAAAatgttagcagcagcagcagcagcatcacagcagTTGTGGCGTATCCTCATCCAATATGCGACGGAGAAGCAGCAGacgCCGTTGCCGTGGCACCGCTGGGTGCAGTGGATGAGAACCTGTGCCGGATCTGTATGGACGCTGTGATCGACTGTGTGCTGCTGGAGTGCGGTCACATGGTTACCTGCACCAAGTGCGGCAAGAGAATGAACGAGTGTCCGATCTGTCGGCAGTACGTCGTCAGAGCCGTGCACGTCTTCAAatcttaacacacacactctcagctcCGGACTGCGAGGCTCAGCAAAATACTCTACAGTACTACTGCTGGACAGTGCGCCTCTGATGATCAGACTCCAAACACTTTCTCTGTTCCCGTCACCAGACCCCAACCccagcgagtgtgtgtgtgtgtgagagacccAGAGCACTCTAGTGTGCGAGACCTGGGGCACGcaagtgtatgtgagtgtgtgtgacatGGGGAGCtcgagtgtgtgtgagctgggGTGCGctagtgtatttgtgtgtgtgacgCAGGCGCACaagtgtaagtgagtgtgtgaccCAGGGTGCATATGAGTGTATGCAAGTGTGTGTGACCTGGGGtgcacgagtgtgtgtgagcCAGGTTGGCTTGGTCTAGTCATTAATAAAGAGTCTGAGATGATTTATGTTTATGTGCAATATTAGAAAATAAACGGAGCGTGAGCTAACAACGCTAATCACCCACAGCAGGACTGTCGCTGTACCTTACAGAGGTGCCAAACATGGATCGAAGCTTAGTGAACTGTGCGTCAGGCTGATCTGAGTTCTCTCCACTGTGTTGTTTTCTACATCATTGCTCAGTGCTTTAAAACCCTCAGCGGTATAACAGTTTCAGCACACCTGCACCAGGTAACTGAAGATTTCTCCACTTCCTGTTCAGCATTACACCTGAACTCCGCAACAGGGAGCCAGAAAGTCTTTGTTCCATACAGCCAGAAATGTTCATTATTATTGAgttaattcattattaaattaatcgTTAAAGTTTAAATTTACTGAATGGTTGCCAGTATCGCtactaca
>XM_015607301.2
TGATTGGCGGGAGCGCGCTGGTCAATTACGTCATGCCTTGATCCCCAAACAGCGCGCGATGGCGCGGCGGAACGGCTGATCGGCGGCGCGAGGAGCGGTAAGCCCGGAGCAGCAATGAAGGCGGGGGCGTCGTCCATGTGGGCGTCGTGCTGCGGGTTGCTAAATGAGGTGATTGGTACCGGGTCGGTGCGCGGGCAGCAGCCGGGGTTTGGTGGAGCTGCCGGACCTTTCCGCTTCGCACCGAGTGCCGGGTACTCCACCTACCCCCCGACCCCCAGCCCAACCGCAGCCAACGCTGCCGCCGGCCTGGTGTGTAAAGCCTGTGGACTTGCCTTCTCCGTCTTCAGACGCAAGcatGTGTGTTCGGACTGTAAGAAGAGTTTCTGCTCACTGTGCTCAGTGCTGCAGGAAAACCTGCGCCGTTGTGTTACCTGTCACCTGCTGTGGGGAACAGCGTTCCAGCGGCGGCGTTTGATGCGTCTGCGTGTGAAGGACCTGCGGCAGTACCTACGTCTGCGCAACATCAGCACCGACACCTGCAGGGAGAAGGAGGACCTGGTGGAGCTGGTGCTCAGACATCTGGGGGCGGAGCTTCAGCTACCAGAGGACCAGGAGGatcaggaggaagaggaagaagaggaggaagaggaggaggtggCATCAGACAGCCTGCACCTAGCCCCGCCCACAGACCTTTCCTCACCCCCTGCAGCACGCTCCACCTCTCAGCAGTCTGTCTCTGCACTTTCAGTCTCCGCCTCTCAGGGAGAAACACCCAGTCCCAGCAACAGCTCAGGAACCAGCCAGgaacAGGGCGACAGTGCGTCTGTCTCTTTGCTGACCCTGGAACCCAGTGAACGTTTACTAGAGTCCAGTCCGGTGGTGCAGCGGCGGGCGCGGGCGTCTCTCTCTGACCTGGCGCGGGAGGAGGATATCGAGGTGCTGACGGTTCGGCAGCTAAAGGAAATCCTGGCGCGGAACTTTGTAAATTTCTCGGGATGCTGTGAGAAGTGGGAACTGGTGGAGCGAGTTCACCGACTTTACCGAGAGAGCCAGATCAACCGCATCTCCCtagAAAatgttagcagcagcagcagcagcatcacagcagacgCCGTTGCCGTGGCACCGCTGGGTGCAGTGGATGAGAACCTGTGCCGGATCTGTATGGACGCTGTGATCGACTGTGTGCTGCTGGAGTGCGGTCACATGGTTACCTGCACCAAGTGCGGCAAGAGAATGAACGAGTGTCCGATCTGTCGGCAGTACGTCGTCAGAGCCGTGCACGTCTTCAAatcttaacacacacactctcagctcCGGACTGCGAGGCTCAGCAAAATACTCTACAGTACTACTGCTGGACAGTGCGCCTCTGATGATCAGACTCCAAACACTTTCTCTGTTCCCGTCACCAGACCCCAACCccagcgagtgtgtgtgtgtgtgagagacccAGAGCACTCTAGTGTGCGAGACCTGGGGCACGcaagtgtatgtgagtgtgtgtgacatGGGGAGCtcgagtgtgtgtgagctgggGTGCGctagtgtatttgtgtgtgtgacgCAGGCGCACaagtgtaagtgagtgtgtgaccCAGGGTGCATATGAGTGTATGCAAGTGTGTGTGACCTGGGGtgcacgagtgtgtgtgagcCAGGTTGGCTTGGTCTAGTCATTAATAAAGAGTCTGAGATGATTTATGTTTATGTGCAATATTAGAAAATAAACGGAGCGTGAGCTAACAACGCTAATCACCCACAGCAGGACTGTCGCTGTACCTTACAGAGGTGCCAAACATGGATCGAAGCTTAGTGAACTGTGCGTCAGGCTGATCTGAGTTCTCTCCACTGTGTTGTTTTCTACATCATTGCTCAGTGCTTTAAAACCCTCAGCGGTATAACAGTTTCAGCACACCTGCACCAGGTAACTGAAGATTTCTCCACTTCCTGTTCAGCATTACACCTGAACTCCGCAACAGGGAGCCAGAAAGTCTTTGTTCCATACAGCCAGAAATGTTCATTATTATTGAgttaattcattattaaattaatcgTTAAAGTTTAAATTTACTGAATGGTTGCCAGTATCGCtactaca
>XR_002651453.1
GATTGGCGGGAGCGCGCTGGTCAATTACGTCATGCCTTGATCCCCAAACAGCGCGCGATGGCGCGGCGGAACGGCTGATCGGCGGCGCGAGGAGCGGTAAGCCCGGAGCAGCAATGAAGGCGGGGGCGTCGTCCATGTGGGCGTCGTGCTGCGGGTTGCTAAATGAGGTGATTGGTACCGGGTCGGTGCGCGGGCAGCAGCCGGGGTTTGGTGGAGCTGCCGGACCTTTCCGCTTCGCACCGAGTGCCGGGTACTCCACCTACCCCCCGACCCCCAGCCCAACCGCAGCCAACGCTGCCGCCGGCCTGGTGTGTAAAGCCTGTGGACTTGCCTTCTCCGTCTTCAGACGCAAGcatGTGTGTTCGGACTGTAAGAAGAGTTTCTGCTCACTGTGCTCAGTGCTGCAGGAAAACCTGCGCCGTTGTGTTACCTGTCACCTGCTGTGGGGAACAGCGTTCCAGCGGCGGCGTTTGATGCGTCTGCGTGTGAAGGACCTGCGGCAGTACCTACGTCTGCGCAACATCAGCACCGACACCTGCAGGGAGAAGGAGGACCTGGTGGAGCTGGTGCTCAGACATCTGGGGGCGGAGCTTCAGCTACCAGAGGACCAGGAGGatcaggaggaagaggaagaagaggaggaagaggaggaggtggCATCAGACAGCCTGCACCTAGCCCCGCCCACAGACCTTTCCTCACCCCCTGCAGCACGCTCCACCTCTCAGCAGTCTGTCTCTGCACTTTCAGTCTCCGCCTCTCAGGGAGAAACACCCAGTCCCAGCAACAGCTCAGGAACCAGCCAGgaacAGGGCGACAGTGCGTCTGTCTCTTTGCTGACCCTGGAACCCAGTGAACGTTTACTAGAGTCCAGTCCGGTGGTGCAGCGGCGGGCGCGGGCGTCTCTCTCTGACCTGGCGCGGGAGGAGGATATCGAGGTGCTGACGGTTCGGCAGCTAAAGGAAATCCTGGCGCGGAACTTTGTAAATTTCTCGGGATGCTGTGAGAAGTGGGAACTGGTGGAGCGAGTTCACCGACTTTACCGAGAGAGCCAGATCAACCGCATCTCCCtagAAAatgttagcagcagcagcagcagcatcacagcagTTGTGGCGTATCCTCATCCAATATGCGACGGAGAAGCAGCAGacgCCGTTGCCGTGGCACCGCTGGGTGCAGTGGATGAGAACCTGTGCCGGATCTGTATGGACGCTGTGATCGACTGTGTGCTGCTGGAGTGCGGTCACATGGTTACCTGCACCAAGTGCGGCAAGAGAATGAACGAGTGTCCGATCTGTCGGCAGTACGTCGTCAGAGCCGTGCACGTCTTCAAatcttaacacacacactctcagctcCGGACTGCGAGGCTCAGCAAAATACTCTACAGTACTACTGCTGGACAGTGCGCCTCTGATGATCAGACTCCAAACACTTTCTCTGTTCCCGTCACCAGACCCCAACCccagcgagtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtggaggtca

Function

NR:

description
E3 ubiquitin-protein ligase RNF34-like isoform X1

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254995.3 True 2145 mRNA 0.55 8 19122654 19128122
XM_015607301.2 False 2104 mRNA 0.55 7 19122654 19128123
XR_002651453.1 False 1521 misc_RNA 0.59 9 19119786 19128122

Neighbor

gene id symbol gene type direction distance location
LOC103047211 LOC108425134 coding downstream 13650 19099862 ~ 19106136 (-)
rhof rhof,LOC108425170,LOC105014892,LOC106568222 coding downstream 47257 19063550 ~ 19072529 (-)
LOC103031534 NA coding downstream 63534 19052991 ~ 19056252 (-)
LOC103030174 NA coding downstream 71450 19038310 ~ 19048336 (-)
LOC103029848 ggt1 coding downstream 113925 18994874 ~ 19005861 (-)
dusp11 NA coding upstream 1084 19129207 ~ 19133378 (-)
LOC103036397 march5l,LOC103036397,LOC108425180,LOC107689266,LOC107718703,LOC107602066,LOC107588990 coding upstream 29979 19158102 ~ 19162507 (-)
LOC103047514 NA coding upstream 54126 19182249 ~ 19185669 (-)
inip inip,LOC107658659,LOC107558675,LOC107571239 coding upstream 82757 19210880 ~ 19213378 (-)
lin54 lin54,LOC107744261 coding upstream 91711 19219834 ~ 19235608 (-)
G177688 NA non-coding downstream 41452 19075375 ~ 19078334 (-)
LOC103033103 NA non-coding downstream 41810 19077571 ~ 19077976 (-)
LOC111195061 NA non-coding downstream 42870 19075247 ~ 19076916 (-)
G177678 NA non-coding downstream 132371 18983812 ~ 18987415 (-)
G177669 NA non-coding downstream 164846 18950852 ~ 18954940 (-)
G177717 NA non-coding upstream 16155 19144278 ~ 19147039 (-)
G177728 actr1b,actr1,LOC108425179,LOC103036907,LOC107588989,LOC107658603,LOC107602067,LOC106563059 non-coding upstream 33494 19161617 ~ 19164767 (-)
G177729 acty,LOC103036907,LOC108425179,LOC107658603,LOC106563059,LOC107588989 non-coding upstream 37967 19166090 ~ 19168529 (-)
G177742 kiaa1958 non-coding upstream 72426 19200549 ~ 19202732 (-)
G177735 NA non-coding upstream 86183 19214306 ~ 19216110 (-)
G177704 NA other downstream 27640 19091146 ~ 19092146 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other downstream 185186 18887028 ~ 18934600 (-)
LOC111195059 NA other downstream 501174 18614892 ~ 18618612 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 588151 18485642 ~ 18531635 (-)
G177568 NA other downstream 716778 18397582 ~ 18403008 (-)
LOC111194984 sh2d4a other upstream 610526 19738649 ~ 19739313 (-)
G178173 NA other upstream 2163399 21291522 ~ 21295833 (-)
G178267 grin3a,LOC107710005,LOC107750958 other upstream 2805396 21933519 ~ 21933831 (-)
G178426 NA other upstream 3327374 22455497 ~ 22456779 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other upstream 3373195 22501318 ~ 22509783 (-)

Expression


Co-expression Network