LOC103036397 (march5l,LOC103036397,LOC108425180,LOC107689266,LOC107718703,LOC107602066,LOC107588990)


Basic Information

Item Value
gene id LOC103036397
gene name march5l,LOC103036397,LOC108425180,LOC107689266,LOC107718703,LOC107602066,LOC107588990
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19158102 ~ 19162507 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254998.3
CGATAGAAATTTCCTCTGTGAGGCGGTTAAAGCGGAAGTTGCCAAAAGTGGCTTAGTAAACACTTGACAGGTtataaactcttaaatcttaaatctgcTTTTTAAAGCTGCTGTGGCAGACAGACTGATGATCAATCAGTTTGATGGTCAGACGTGATTGATCATGGCTTCTGCAGATGAACCTCCTGAAAGGCACTGCTGGGTGTGTTTTGCAACAGAGAGGGAGGACCGGGTGGCTGAGTGGGTCAGTCCATGTCGGTGTAAAGGCTGCACCAAGTGGATCCACCAGGCCTGTCTGCAGCGTTGGCTGGATGAAAAGCAGAAGGGCAACAGCGGCGGAACCGTCAGCTGCCCACAGTGTGGCACAGAATACCGTATTGTCTTCCCCAAAATGGgACCTTTAGTATATTTCCTGCAGCAGCTGGACCGAGCTCTGTCCCGGGTCAGTCCATTTGCAGCTGCCGGTGTGGTGGTGGGAACGGTTTACTGGTCAGCTGTCACCTATGGAGCCGTCACAGTCATGCAGGTGGTGGGTCATAAGAAGGGGCTGGATGTTATGGAGCGGGCGGATCCGCTATTCTTGCTGATGGGTTTACCCACAATACCGGTGATGCTGGTTCTGGGGAAGATGATCCGGTGGGAGGATTATGCTGTGCGACTCTGGCAACGTCACTCCGCCAAACTACAGCTGCTCAGCGCCATCGTACCTGgtATTGGGAGGCCCCTTCCCCGAGTGCCGGTTGCTGGGGGTTATGGGGGGGATCATATCTCGGTGTCGCGGACACTGTGTGGTGCGCTGGTCTTCCCCTCCGTTGCCGGGCTGGTGGGTCGGCTGCTGTTCCGGAGGGTACCGTCCAACCTGCAGCGGACTGTACTGggcGGGATAGCGTTCGTGGTGATTAAAGGGATACTGAAGGTTTATTTTAAGCAGCAGCAGTTTCTCATCCAGGCCAACCGGCGCATCCTCAACTACCCCGACCGGGACGATCCAACGGACACAgcggaggaggagggagggagtgagggatGAAGAGTCATAAGAGGGGGGAGTGATGGAAGAAGAGTTGAAGGAGGGGGGAGTGAGAGATGAACAGGAGAAGGGGGAAGTGAGGGataaggaggaggaagaaggggAATGAGGGATGAAGAGAGGGAGGGGCAAATGAGGAATGAAGAGGAGGGTGGAGTGAGGGATGAAGAGGAGGGGCAAATGAGggatgaggaggaggggggAGTAAGGAAAAAGAGAAGGGGGGAATGAGGGATGAAGAAAAGGAGGCACAAGGAGTAGAGGGGGAGTGAGAGATGAAGAGGGGGAGGAGTGAGGGATGAAGAGTAGAAGGAGGGGGGTGAGGGATGAAGACAAGGAGGAGAAAAGGGAAGGAAGGATACGGAGTAGAGGTGGAGTGAGGGATGAGGAGGATGGGGTGAAGGGGGAGGGATGAAGAGGAGATAGAGAAAGGTGGTTCCTCTCTAACTTGATGATCCAGATTCCGGATCTGATGCTGATGTTTGATTCTTATAAACGCTGTAAATCCTGTTATTTAATTTGagttatttctttattaaagtGAATTATGAACGTGTTCCAGAGTTTATTGATAAGCTTTATTAAAGTGAATTATGAACGTG
>XM_022681191.1
ATAGttttgtgtctcttgtctcaccTATGTCTGTCTATTTCTGATGTCTACATCTGTGACCCTGATGTGTTGTAGCtacatttagtgtctctcaTACTTTTATTAATTACAATCTTATTTTGCTGTACCTTTGggaggagagtaacgtaatttcaatccTCTGTATGTCCCGTTCATATGCAATACTGACAATTAAACTACTTGACTTAATTTATTAGGTGGGTCCAGAGCAGAGCAGCCATTACAGAAACAATAACAGCCCGCCGGGAGGAGGCCCGGCCCCCGCGGAGCTGCTCTCGGCAAAAATAACTGATTTATAAAAAGTAACTCTGCTGTGGCAGACAGACTGATGATCAATCAGTTTGATGGTCAGACGTGATTGATCATGGCTTCTGCAGATGAACCTCCTGAAAGGCACTGCTGGGTGTGTTTTGCAACAGAGAGGGAGGACCGGGTGGCTGAGTGGGTCAGTCCATGTCGGTGTAAAGGCTGCACCAAGTGGATCCACCAGGCCTGTCTGCAGCGTTGGCTGGATGAAAAGCAGAAGGGCAACAGCGGCGGAACCGTCAGCTGCCCACAGTGTGGCACAGAATACCGTATTGTCTTCCCCAAAATGGgACCTTTAGTATATTTCCTGCAGCAGCTGGACCGAGCTCTGTCCCGGGTCAGTCCATTTGCAGCTGCCGGTGTGGTGGTGGGAACGGTTTACTGGTCAGCTGTCACCTATGGAGCCGTCACAGTCATGCAGGTGGTGGGTCATAAGAAGGGGCTGGATGTTATGGAGCGGGCGGATCCGCTATTCTTGCTGATGGGTTTACCCACAATACCGGTGATGCTGGTTCTGGGGAAGATGATCCGGTGGGAGGATTATGCTGTGCGACTCTGGCAACGTCACTCCGCCAAACTACAGCTGCTCAGCGCCATCGTACCTGgtATTGGGAGGCCCCTTCCCCGAGTGCCGGTTGCTGGGGGTTATGGGGGGGATCATATCTCGGTGTCGCGGACACTGTGTGGTGCGCTGGTCTTCCCCTCCGTTGCCGGGCTGGTGGGTCGGCTGCTGTTCCGGAGGGTACCGTCCAACCTGCAGCGGACTGTACTGggcGGGATAGCGTTCGTGGTGATTAAAGGGATACTGAAGGTTTATTTTAAGCAGCAGCAGTTTCTCATCCAGGCCAACCGGCGCATCCTCAACTACCCCGACCGGGACGATCCAACGGACACAgcggaggaggagggagggagtgagggatGAAGAGTCATAAGAGGGGGGAGTGATGGAAGAAGAGTTGAAGGAGGGGGGAGTGAGAGATGAACAGGAGAAGGGGGAAGTGAGGGataaggaggaggaagaaggggAATGAGGGATGAAGAGAGGGAGGGGCAAATGAGGAATGAAGAGGAGGGTGGAGTGAGGGATGAAGAGGAGGGGCAAATGAGggatgaggaggaggggggAGTAAGGAAAAAGAGAAGGGGGGAATGAGGGATGAAGAAAAGGAGGCACAAGGAGTAGAGGGGGAGTGAGAGATGAAGAGGGGGAGGAGTGAGGGATGAAGAGTAGAAGGAGGGGGGTGAGGGATGAAGACAAGGAGGAGAAAAGGGAAGGAAGGATACGGAGTAGAGGTGGAGTGAGGGATGAGGAGGATGGGGTGAAGGGGGAGGGATGAAGAGGAGATAGAGAAAGGTGGTTCCTCTCTAACTTGATGATCCAGATTCCGGATCTGATGCTGATGTTTGATTCTTATAAACGCTGTAAATCCTGTTATTTAATTTGagttatttctttattaaagtGAATTATGAACGTGTTCCAGAGTTTATTGATAAGCTTTATTAAAGTGAATTATGAACGTG

Function

symbol description
march5l Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in negative regulation of cell aging; protein autoubiquitination; and regulation of mitochondrial fission. Predicted to be located in endoplasmic reticulum and mitochondrial outer membrane.

NR:

description
E3 ubiquitin-protein ligase MARCH5

GO:

id name namespace
GO:0090344 negative regulation of cell aging biological_process
GO:0051865 protein autoubiquitination biological_process
GO:0090140 regulation of mitochondrial fission biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10660 MARCH5; E3 ubiquitin-protein ligase MARCH5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254998.3 False 1632 mRNA 0.52 7 19158102 19161050
XM_022681191.1 True 1854 mRNA 0.51 7 19158102 19162507

Neighbor

gene id symbol gene type direction distance location
dusp11 NA coding downstream 24724 19129207 ~ 19133378 (-)
dgcr2 dgcr2 coding downstream 36445 19112034 ~ 19121657 (-)
LOC103047211 LOC108425134 coding downstream 51966 19099862 ~ 19106136 (-)
rhof rhof,LOC108425170,LOC105014892,LOC106568222 coding downstream 85573 19063550 ~ 19072529 (-)
LOC103031534 NA coding downstream 101850 19052991 ~ 19056252 (-)
LOC103047514 NA coding upstream 19742 19182249 ~ 19185669 (-)
inip inip,LOC107658659,LOC107558675,LOC107571239 coding upstream 48373 19210880 ~ 19213378 (-)
lin54 lin54,LOC107744261 coding upstream 57327 19219834 ~ 19235608 (-)
plac8 plac8 coding upstream 83495 19246002 ~ 19249795 (-)
srek1ip1 srek1ip1,LOC107658680,LOC107744254,LOC107685105,LOC107713259 coding upstream 93582 19256089 ~ 19259917 (-)
G177717 NA non-coding downstream 11063 19144278 ~ 19147039 (-)
G177688 NA non-coding downstream 79768 19075375 ~ 19078334 (-)
LOC103033103 NA non-coding downstream 80126 19077571 ~ 19077976 (-)
LOC111195061 NA non-coding downstream 81186 19075247 ~ 19076916 (-)
G177678 NA non-coding downstream 170687 18983812 ~ 18987415 (-)
G177729 acty,LOC103036907,LOC108425179,LOC107658603,LOC106563059,LOC107588989 non-coding upstream 3583 19166090 ~ 19168529 (-)
G177742 kiaa1958 non-coding upstream 38042 19200549 ~ 19202732 (-)
G177735 NA non-coding upstream 51799 19214306 ~ 19216110 (-)
G177734 NA non-coding upstream 54608 19217115 ~ 19219395 (-)
G177746 cops4,csn4,LOC106562268 non-coding upstream 74844 19237351 ~ 19240764 (-)
LOC103035567 LOC103035567,LOC108425166 other downstream 29979 19119786 ~ 19128123 (-)
G177704 NA other downstream 65956 19091146 ~ 19092146 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other downstream 223502 18887028 ~ 18934600 (-)
LOC111195059 NA other downstream 539490 18614892 ~ 18618612 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 626467 18485642 ~ 18531635 (-)
LOC111194984 sh2d4a other upstream 576142 19738649 ~ 19739313 (-)
G178173 NA other upstream 2129015 21291522 ~ 21295833 (-)
G178267 grin3a,LOC107710005,LOC107750958 other upstream 2771012 21933519 ~ 21933831 (-)
G178426 NA other upstream 3292990 22455497 ~ 22456779 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other upstream 3338811 22501318 ~ 22509783 (-)

Expression


Co-expression Network