inip (inip,LOC107658659,LOC107558675,LOC107571239)


Basic Information

Item Value
gene id inip
gene name inip,LOC107658659,LOC107558675,LOC107571239
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19210880 ~ 19213378 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255002.3
agtgatacTGTAGTGtgttgagatgcactagtatagagTGCAGGGATCAGCCCGGGCTGTAGGGAGCAGTGTGGCGGTAGGAGGACAGAAAGCCGTAGAGGAAGAATAACAATACAAACCTCGCCGAGTTTAGAGGAGCAGCAGTATGATTCTGATATTAATGCAGTAGTTTAttgatttctctttatttatcaGCGGTTTTCAGCTCAGTGTGTTTAGTCTGGAGCTCGGAGAGATGGCCTCTAACCCGCCGGGAGCAGGATTTCAGAATAAAAACAGAGTGGCGATTTTAGCTGAACTGGACAAGGAGAAGAGACGCCTCATACAGAACCAGTCCATGAACAACCCAGGAGCGAGTATCCCTCTCTCAAGACCGGCGGTGAACAAGGATTTCCGGGACCATGCAGAGCAGCAGCACATCGCTGCCCAGcagaaagcagctttacagcatgcacACGCGCACTCTTCAGGCTTTTTTATCACTCAGGATTCCTCTTTCGGAAACCTCATTCTTCCCGTCCTGCCTAGGCTTGATCCAGAGTgatgaagaaataaaataccatGCATTACAAGGACTCTCTGTTTGTTCAATTCAAGTCTTTAAAAGGTTATTACATCCTCTGATTAATTCATGTCACTCAGCAAATAGACTGTTGTGTATACTGATtgtacattgatttttttttttttttggtattttacataaaataaagaaattttaACCAAA

Function

symbol description
inip Predicted to be involved in DNA repair and response to ionizing radiation. Predicted to act upstream of or within cellular response to DNA damage stimulus. Predicted to be located in nucleus. Predicted to be part of SOSS complex. Predicted to be active in nucleoplasm. Orthologous to human INIP (INTS3 and NABP interacting protein).

NR:

description
SOSS complex subunit C

GO:

id name namespace
GO:0010212 response to ionizing radiation biological_process
GO:0006281 DNA repair biological_process
GO:0070876 SOSS complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255002.3 True 727 mRNA 0.43 4 19210880 19213378

Neighbor

gene id symbol gene type direction distance location
LOC103047514 NA coding downstream 25211 19182249 ~ 19185669 (-)
LOC103036397 march5l,LOC103036397,LOC108425180,LOC107689266,LOC107718703,LOC107602066,LOC107588990 coding downstream 48373 19158102 ~ 19162507 (-)
dusp11 NA coding downstream 77502 19129207 ~ 19133378 (-)
dgcr2 dgcr2 coding downstream 89223 19112034 ~ 19121657 (-)
LOC103047211 LOC108425134 coding downstream 104744 19099862 ~ 19106136 (-)
lin54 lin54,LOC107744261 coding upstream 6456 19219834 ~ 19235608 (-)
plac8 plac8 coding upstream 32624 19246002 ~ 19249795 (-)
srek1ip1 srek1ip1,LOC107658680,LOC107744254,LOC107685105,LOC107713259 coding upstream 42711 19256089 ~ 19259917 (-)
adamts6 adamts6,LOC107685101,LOC107713302,LOC107744255 coding upstream 144744 19358122 ~ 19430590 (-)
trim23 trim23,LOC107658681 coding upstream 236367 19449745 ~ 19458441 (-)
G177742 kiaa1958 non-coding downstream 8148 19200549 ~ 19202732 (-)
G177729 acty,LOC103036907,LOC108425179,LOC107658603,LOC106563059,LOC107588989 non-coding downstream 42351 19166090 ~ 19168529 (-)
G177728 actr1b,actr1,LOC108425179,LOC103036907,LOC107588989,LOC107658603,LOC107602067,LOC106563059 non-coding downstream 46113 19161617 ~ 19164767 (-)
G177685 NA non-coding downstream 51734 19110161 ~ 19159146 (-)
G177717 NA non-coding downstream 63841 19144278 ~ 19147039 (-)
G177735 NA non-coding upstream 928 19214306 ~ 19216110 (-)
G177734 NA non-coding upstream 3737 19217115 ~ 19219395 (-)
G177746 cops4,csn4,LOC106562268 non-coding upstream 23973 19237351 ~ 19240764 (-)
G177751 cwc27,LOC107744252,LOC107713303 non-coding upstream 47643 19261021 ~ 19266467 (-)
G177762 NA non-coding upstream 128164 19341542 ~ 19341849 (-)
LOC103035567 LOC103035567,LOC108425166 other downstream 82757 19119786 ~ 19128123 (-)
G177704 NA other downstream 118734 19091146 ~ 19092146 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other downstream 276280 18887028 ~ 18934600 (-)
LOC111195059 NA other downstream 592268 18614892 ~ 18618612 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 679245 18485642 ~ 18531635 (-)
LOC111194984 sh2d4a other upstream 525271 19738649 ~ 19739313 (-)
G178173 NA other upstream 2078144 21291522 ~ 21295833 (-)
G178267 grin3a,LOC107710005,LOC107750958 other upstream 2720141 21933519 ~ 21933831 (-)
G178426 NA other upstream 3242119 22455497 ~ 22456779 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other upstream 3287940 22501318 ~ 22509783 (-)

Expression


Co-expression Network