plac8 (plac8)


Basic Information

Item Value
gene id plac8
gene name plac8
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19246002 ~ 19249795 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255007.2
GGTGACTTCTTATATAAAGGGCCACTGGCTTTGACAGTGTGCATGTGGACACTGCAGTGGATATTTGAAGAGTGTCTTTAGATTGAACAGAATCTACAAGCAGAAACATGGAGGTGACGACCCAGCCAGGCCCGTTTGCTCGCACAGAGTTCCAGACTGGGCTGTTTGAATGCTGTGATGACTGCTGCACATGCATGTACGGCTATTTCTGCCTGCCCTGCCTGGGCTGTTCCATCGCCAGTGATATGGGCGAGTGCTGTCTGTGTGGTTTAGGCATGCCGATACGCAGCGTGTATCGAACCAAATACAACATTAAGGGCTCCATGTGTAAAGACTTCTGTATCAGTCAGTTCTGCCTGCCCTGTGCTGCCTGTCAGCTAAAGAGAGACATAGACAGAAGAAAGCAGCAGGGGATCTTCTAAGGTGGACCAGACTCCAGCACACAGCATAACACCAACCCTCACACTCACATAACACTGTTACAGTGAGTGCCTTCATCTCAGAGTCCATCCTGATCCCGAGGGACGTCTCACTGACATGGTCTTCACACTGGTCTAATGGGATGATACTGTGTAaatttgtataataaaaaaaattgtgagcaATGTGATCATcagaattaatattaataaaatagatcaatGTGTTCACTGTG

Function

symbol description
plac8 Predicted to enable chromatin binding activity. Predicted to be involved in positive regulation of cold-induced thermogenesis and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including brown fat cell differentiation; defense response to bacterium; and response to cold. Predicted to be located in azurophil granule lumen and extracellular region.

NR:

description
placenta-specific gene 8 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255007.2 True 655 mRNA 0.47 4 19246002 19249795

Neighbor

gene id symbol gene type direction distance location
lin54 lin54,LOC107744261 coding downstream 10394 19219834 ~ 19235608 (-)
inip inip,LOC107658659,LOC107558675,LOC107571239 coding downstream 32624 19210880 ~ 19213378 (-)
LOC103047514 NA coding downstream 60333 19182249 ~ 19185669 (-)
LOC103036397 march5l,LOC103036397,LOC108425180,LOC107689266,LOC107718703,LOC107602066,LOC107588990 coding downstream 83495 19158102 ~ 19162507 (-)
dusp11 NA coding downstream 112624 19129207 ~ 19133378 (-)
srek1ip1 srek1ip1,LOC107658680,LOC107744254,LOC107685105,LOC107713259 coding upstream 6294 19256089 ~ 19259917 (-)
adamts6 adamts6,LOC107685101,LOC107713302,LOC107744255 coding upstream 108327 19358122 ~ 19430590 (-)
trim23 trim23,LOC107658681 coding upstream 199950 19449745 ~ 19458441 (-)
sgtb sgtb,LOC107667268,LOC107558703,LOC107548671,LOC107705058 coding upstream 226533 19476328 ~ 19507826 (-)
LOC103041684 tjp2 coding upstream 526009 19775804 ~ 19832975 (-)
G177746 cops4,csn4,LOC106562268 non-coding downstream 5238 19237351 ~ 19240764 (-)
G177734 NA non-coding downstream 26607 19217115 ~ 19219395 (-)
G177735 NA non-coding downstream 29892 19214306 ~ 19216110 (-)
G177742 kiaa1958 non-coding downstream 43270 19200549 ~ 19202732 (-)
G177729 acty,LOC103036907,LOC108425179,LOC107658603,LOC106563059,LOC107588989 non-coding downstream 77473 19166090 ~ 19168529 (-)
G177751 cwc27,LOC107744252,LOC107713303 non-coding upstream 11226 19261021 ~ 19266467 (-)
G177762 NA non-coding upstream 91747 19341542 ~ 19341849 (-)
G177770 NA non-coding upstream 148153 19397948 ~ 19401691 (-)
G177766 NA non-coding upstream 197973 19447768 ~ 19449065 (-)
G177769 trappc13,LOC107667267 non-coding upstream 221327 19471122 ~ 19472634 (-)
LOC103035567 LOC103035567,LOC108425166 other downstream 117879 19119786 ~ 19128123 (-)
G177704 NA other downstream 153856 19091146 ~ 19092146 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other downstream 311402 18887028 ~ 18934600 (-)
LOC111195059 NA other downstream 627390 18614892 ~ 18618612 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 714367 18485642 ~ 18531635 (-)
LOC111194984 sh2d4a other upstream 488854 19738649 ~ 19739313 (-)
G178173 NA other upstream 2041727 21291522 ~ 21295833 (-)
G178267 grin3a,LOC107710005,LOC107750958 other upstream 2683724 21933519 ~ 21933831 (-)
G178426 NA other upstream 3205702 22455497 ~ 22456779 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other upstream 3251523 22501318 ~ 22509783 (-)

Expression


Co-expression Network