srek1ip1 (srek1ip1,LOC107658680,LOC107744254,LOC107685105,LOC107713259)


Basic Information

Item Value
gene id srek1ip1
gene name srek1ip1,LOC107658680,LOC107744254,LOC107685105,LOC107713259
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19256089 ~ 19259917 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255008.3
TGTGTAAGTTCCCCGGCTTTCAGCGGGTGGCGGTAATGCTCACCGTAAGCTActagaggaagaagaaggagaagagcctggtgtgtgttgttgtgttttgaGGACGAGCtgcatttttttcacattaaaatcTCTATACTCAGCTGAAATGGCTGTTCCAGgtGTTAATAAGGATAATATTCGAGCTGGATGTAAAAGATGTGGCTATCCGGGTCACCTGACGTTCGAGTGTCGTAACTTTGTGCGAGTGGACCCCAGGAAGGACATCGTTTTGGACGTTAGCAGCACAAGCACTGAAGAGAGCGAGGAAGAAGAGCAGGCGGCTGTCAGCAAGGAGAAGATCTTTGGGAGCAATTCTAAAGGTTCTCAGGAGGACTCAAAAAAGGAAAAGcacaaaaagaaaagtaaagaaagatCCCACCGTAAAGCAAAAAAGAGGTCTTATTCATCTAGTGATGATGacgatgaggaggaggaggaagaggagagcaaaaaaaagaaaaagcacaaGAGCCATAAGAAGAAaggcaaaaaggaaaaaaaagagaaagagaaaagacgTATGAAAAAGAGCAAGAAGAAACTTAAACAGACCTCCtcatccagcagctccagcggATCTTCAGACACAGACTGAGATGttaatgttgttatttttgATGTCGGCTCACCAGGACCAGCATTTCTTATGAACGTAAAGGCTCAGACATTTGCGGcagattttaattaaaataattatgatCTGAAATACCCAAAGACTAGGGGAGTTTCAGAGCCGTGTATAGATATGTTACTGTTTAAGCAGTGAATCTTTCTCCTGACATTGGTAGCTATGTTCTCTTATGGAGGTTTATTGTGCTGGTGGAAAGGTAACCTTTCTTAGTGTATTTTTGATGCAATTATGATTTTGtacagaaagtaaataaaaacatgtggCTGTTACTTTTCTATAA

Function

symbol description
srek1ip1 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to act upstream of or within RNA splicing and mRNA processing. Orthologous to human SREK1IP1 (SREK1 interacting protein 1).

NR:

description
protein SREK1IP1 isoform X1

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255008.3 True 953 mRNA 0.41 5 19256089 19259917

Neighbor

gene id symbol gene type direction distance location
plac8 plac8 coding downstream 6294 19246002 ~ 19249795 (-)
lin54 lin54,LOC107744261 coding downstream 20481 19219834 ~ 19235608 (-)
inip inip,LOC107658659,LOC107558675,LOC107571239 coding downstream 42711 19210880 ~ 19213378 (-)
LOC103047514 NA coding downstream 70420 19182249 ~ 19185669 (-)
LOC103036397 march5l,LOC103036397,LOC108425180,LOC107689266,LOC107718703,LOC107602066,LOC107588990 coding downstream 93582 19158102 ~ 19162507 (-)
adamts6 adamts6,LOC107685101,LOC107713302,LOC107744255 coding upstream 98205 19358122 ~ 19430590 (-)
trim23 trim23,LOC107658681 coding upstream 189828 19449745 ~ 19458441 (-)
sgtb sgtb,LOC107667268,LOC107558703,LOC107548671,LOC107705058 coding upstream 216411 19476328 ~ 19507826 (-)
LOC103041684 tjp2 coding upstream 515887 19775804 ~ 19832975 (-)
LOC103023098 LOC108428883,LOC107705047,LOC107667273,LOC107726562,LOC107558698 coding upstream 575715 19835632 ~ 19863882 (-)
G177746 cops4,csn4,LOC106562268 non-coding downstream 15325 19237351 ~ 19240764 (-)
G177734 NA non-coding downstream 36694 19217115 ~ 19219395 (-)
G177735 NA non-coding downstream 39979 19214306 ~ 19216110 (-)
G177742 kiaa1958 non-coding downstream 53357 19200549 ~ 19202732 (-)
G177729 acty,LOC103036907,LOC108425179,LOC107658603,LOC106563059,LOC107588989 non-coding downstream 87560 19166090 ~ 19168529 (-)
G177751 cwc27,LOC107744252,LOC107713303 non-coding upstream 1104 19261021 ~ 19266467 (-)
G177762 NA non-coding upstream 81625 19341542 ~ 19341849 (-)
G177770 NA non-coding upstream 138031 19397948 ~ 19401691 (-)
G177766 NA non-coding upstream 187851 19447768 ~ 19449065 (-)
G177769 trappc13,LOC107667267 non-coding upstream 211205 19471122 ~ 19472634 (-)
LOC103035567 LOC103035567,LOC108425166 other downstream 127966 19119786 ~ 19128123 (-)
G177704 NA other downstream 163943 19091146 ~ 19092146 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other downstream 321489 18887028 ~ 18934600 (-)
LOC111195059 NA other downstream 637477 18614892 ~ 18618612 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 724454 18485642 ~ 18531635 (-)
LOC111194984 sh2d4a other upstream 478732 19738649 ~ 19739313 (-)
G178173 NA other upstream 2031605 21291522 ~ 21295833 (-)
G178267 grin3a,LOC107710005,LOC107750958 other upstream 2673602 21933519 ~ 21933831 (-)
G178426 NA other upstream 3195580 22455497 ~ 22456779 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other upstream 3241401 22501318 ~ 22509783 (-)

Expression


Co-expression Network