cwc27 (cwc27,LOC102784682)


Basic Information

Item Value
gene id cwc27
gene name cwc27,LOC102784682
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19261204 ~ 19325401 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255009.3
TTGGTTCGCTAGCTTTAGGTGGCAGCAGTGCGGttagcagtgtttttcccccagTCAGGATGTTAAAGAAGGAGAAGTCTAAGCTGGCGGCGGTGTACAGGATTTATTAGAgtgatattttatgtttatgcgAGTTTTTTAGCCGTTTattatcgtttttttttcagtacggTAGCTGGCGTCCTACTAATACTGCTTCAAACATGAGCAACATATACATCCAGGAGCCTCCGACTAGTGGCAAGgTTTTAATTAAGACCTCTGCAGGTGATATTGATGTGGAGCTGTGGTCCAAAGAAGCTCCCAAAGCCTGCAGAAACTTCACTCAGCTGTGCATGGAAGGTTACTACAATGGGACCATATTCCATCGTGTTGTGCCAGAATTTATTATCCAGGGGGGTGATCCCACCGGCACTGGAACTGGAGGGGAGTCTATCTATGGCCGTCCTTTCAAGGACGAGTTTCACTCCAGATTACGGTTCAACAGGAGAGGTTTGGTGGCCATGGCAAATGCAGGACCACACGATAATGGAAGCCAGTTCTTCTTCACACTGGGACGGGCTGATGAGCTCAATAACAAGCACACCATTTTTGGAAAGGTCACAGGAGACACAGTGTATAACATGTTACGGTTGGCAGAGGTGGAGTGTGACAGTAACGAGCGGCCGCTAAATCCCCACAAAATCCGATCTACAGAGGTTTTACATTCTCCGTTTGATGACATTGAGCCTCGTGAAATAAAAGGCAAGAAAGAGAAATCCAAAGAGGAGACAAAGAAATCTCAGTCTAAGGCAACAAAAAATTTCAGCTTGCTCTCGTTTGGTGAGGAggcagaagaggaagaggaaatgGTCACTCAAGTCAGCCAGACAATGAAGGGGAAAAGCAAAAGCAGTCACGACCTTCTAAAGGACGATCCGAAGTTGAGCTCAGTACCGGTTGTTGACAGaaaaacaggtcctGAAGGAAGAGGGGAAAATTCAGAGGAAGATGATGAAATGAAAGATAGAGACGAGGATGACGAAGACGATGAGGATGCAGCTCTGAGGAGAAAGGAAATGAGAGACCGCATCTCAAACAAACTGAAGAAAGGAAAAGTGGGAGAAGAGAAAGCTGAGGTTGgcgaggagagagaaaagaagagcagTCGCAGTGATGAACTACGAAAAGAGGCACGCCAGTTGAAGAAAGAGTTGCTTGCAATCAAGCAACGGAAAGAGGAGAGCGTGAAACCGGAGGAGGTCGAAAGTGCTGGTGAAAAGAAGCCAGCTAATGAAGCCTTGGCCGAGTACATGGAAAGCAAGAAGAAATACGAGGAAATGAGGAAGCAGAAGCTGAAGAAAGGCTCAAGTCGCGAGGCACAGACTCTCGCTCTTCTGGACCGCTTTAAATCCAAGCTGTCGAGTGCCATTTCTGAGGCCCCAGAGACCTCTGAAGATGTGGAGGAACTGGGAGAGGATGATGATAAAGGATGGATGGCCCATGTACTGCAGTTTGATGAGCAAACCAGAAAGGTGAAGGATGCCAACATGCAGGACGAAGACACATTCGAGATCTATGACCCGCGCAACCCCGTCAACAAGCGCAGACGAGAGGAGAGCAAGAAGCTTCTGAGGGAGAAGAAGGCCAAGAGGTGAGGAGGGAGTCAGTGCTTTGTTCCTGTGTCTCAGTGACCTTCTCTCATCTGCTGGATCTTCTCCTGCTGCCTGCTCACTTTGGTATGAACTGCAACCCTGGATCCTGTTGAACAAGGAAACAAGAAGGGACTAATGAATGTGACCTGCTTGAAACAGGAAGGCTGGTGTACAGACTTTCCCTAAGACATGGTGTACAGTATAATCTCTCAAACAGAGAATCTCAGTCATTCACACCAATTAAggttaataaatgattttttattacTGCAAATATTCtgagtttgtttaattttgtcaaGTTTGTATCATGTTTGTACATGTTGTCTCTGCTAATAAAACTGGAAACAAGACCCCCTGCTGAATTGGGATCAActgggaaataataataataataaagttcattaaaaaaataactatatgTA
>XM_022681194.1
GTTGGTTCGCTAGCTTTAGGTGGCAGCAGTGCGGttagcagtgtttttcccccagTCAGGATGTTAAAGAAGGAGAAGTCTAAGCTGGCGGCGGTGTACAGGATTTATTAGAgtgatattttatgtttatgcgAGTTTTTTAGCCGTTTattatcgtttttttttcagtacggTAGCTGGCGTCCTACTAATACTGCTTCAAACATGAGCAACATATACATCCAGGAGCCTCCGACTAGTGGCAAGgTTTTAATTAAGACCTCTGCAGGTGATATTGATGTGGAGCTGTGGTCCAAAGAAGCTCCCAAAGCCTGCAGAAACTTCACTCAGCTGTGCATGGAAGGTTACTACAATGGGACCATATTCCATCGTGTTGTGCCAGAATTTATTATCCAGGGGGGTGATCCCACCGGCACTGGAACTGGAGGGGAGTCTATCTATGGCCGTCCTTTCAAGGACGAGTTTCACTCCAGATTACGGTTCAACAGGAGAGGTTTGGTGGCCATGGCAAATGCAGGACCACACGATAATGGAAGCCAGTTCTTCTTCACACTGGGACGGGCTGATGAGCTCAATAACAAGCACACCATTTTTGGAAAGGTCACAGGAGACACAGTGTATAACATGTTACGGTTGGCAGAGGTGGAGTGTGACAGTAACGAGCGGCCGCTAAATCCCCACAAAATCCGATCTACAGAGGTTTTACATTCTCCGTTTGATGACATTGAGCCTCGTGAAATAAAAGGCAAGAAAGAGAAATCCAAAGAGGAGACAAAGAAATCTCAGTCTAAGGCAACAAAAAATTTCAGCTTGCTCTCGTTTGGTGAGGAggcagaagaggaagaggaaatgGTCACTCAAGTCAGCCAGACAATGAAGGGGAAAAGCAAAAGCAGTCACGACCTTCTAAAGGACGATCCGAAGTTGAGCTCAGTACCGGTTGTTGACAGaaaaacaggtcctGAAGGAAGAGGGGAAAATTCAGAGGAAGATGATGAAATGAAAGATAGAGACGAGGATGACGAAGACGATGAGGATGCAGCTCTGAGGAGAAAGGAAATGAGAGACCGCATCTCAAACAAACTGAAGAAAGGAAAAGTGGGAGAAGAGAAAGCTGAGGTTGgcgaggagagagaaaagaagagcagTCGCAGTGATGAACTACGAAAAGAGGCACGCCAGTTGAAGAAAGAGTTGCTTGCAATCAAGCAACGGAAAGAGGAGAGCGTGAAACCGGAGGAGGTCGAAAGTGCTGttgaagGTGAAAAGAAGCCAGCTAATGAAGCCTTGGCCGAGTACATGGAAAGCAAGAAGAAATACGAGGAAATGAGGAAGCAGAAGCTGAAGAAAGGCTCAAGTCGCGAGGCACAGACTCTCGCTCTTCTGGACCGCTTTAAATCCAAGCTGTCGAGTGCCATTTCTGAGGCCCCAGAGACCTCTGAAGATGTGGAGGAACTGGGAGAGGATGATGATAAAGGATGGATGGCCCATGTACTGCAGTTTGATGAGCAAACCAGAAAGGTGAAGGATGCCAACATGCAGGACGAAGACACATTCGAGATCTATGACCCGCGCAACCCCGTCAACAAGCGCAGACGAGAGGAGAGCAAGAAGCTTCTGAGGGAGAAGAAGGCCAAGAGGTGAGGAGGGAGTCAGTGCTTTGTTCCTGTGTCTCAGTGACCTTCTCTCATCTGCTGGATCTTCTCCTGCTGCCTGCTCACTTTGGTATGAACTGCAACCCTGGATCCTGTTGAACAAGGAAACAAGAAGGGACTAATGAATGTGACCTGCTTGAAACAGGAAGGCTGGTGTACAGACTTTCCCTAAGACATGGTGTACAGTATAATCTCTCAAACAGAGAATCTCAGTCATTCACACCAATTAAggttaataaatgattttttattacTGCAAATATTCtgagtttgtttaattttgtcaaGTTTGTATCATGTTTGTACATGTTGTCTCTGCTAATAAAACTGGAAACAAGACCCCCTGCTGAATTGGGATCAActgggaaataataataataataaagttcattaaaaaaataactatatgTA

Function

symbol description
cwc27 Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in protein peptidyl-prolyl isomerization. Predicted to act upstream of or within protein folding. Predicted to be located in nucleus. Predicted to be part of U2-type precatalytic spliceosome. Orthologous to human CWC27 (CWC27 spliceosome associated cyclophilin).

NR:

description
peptidyl-prolyl cis-trans isomerase CWC27 homolog

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG:

id description
K12737 SDCCAG10; peptidyl-prolyl cis-trans isomerase SDCCAG10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255009.3 False 2059 mRNA 0.45 14 19261205 19325401
XM_022681194.1 True 2066 mRNA 0.45 14 19261204 19325401

Neighbor

gene id symbol gene type direction distance location
fam159b NA coding upstream 6397 19252744 ~ 19254807 (+)
cops4 cops4,csn4,LOC106562268 coding upstream 16617 19237435 ~ 19244587 (+)
kiaa1958 kiaa1958,LOC107683261,LOC106568575 coding upstream 51775 19193304 ~ 19209429 (+)
LOC103036907 actr1,acty,LOC108425179,LOC103036907,LOC106585571,LOC105889177,LOC107602067 coding upstream 92675 19161614 ~ 19168529 (+)
LOC103033969 NA coding upstream 104101 19150409 ~ 19157103 (+)
ppwd1 ppwd1 coding downstream 107086 19432487 ~ 19445658 (+)
trappc13 trappc13,LOC107667267 coding downstream 134555 19459956 ~ 19475177 (+)
nln nln,LOC107705053,LOC107667266,LOC107548669 coding downstream 178156 19503557 ~ 19522073 (+)
erbin erbin,erbb2ip,LOC107667260,LOC107726559,LOC107705051,LOC107742960 coding downstream 268700 19594101 ~ 19651418 (+)
LOC103023409 co-prmt,LOC108428880 coding downstream 571336 19896737 ~ 19918977 (+)
G177449 NA non-coding upstream 45084 19214411 ~ 19216120 (+)
G177448 inip,LOC107658659,LOC107558675,LOC107571239 non-coding upstream 47892 19210944 ~ 19213312 (+)
G177446 NA non-coding upstream 71475 19189073 ~ 19189729 (+)
G177445 NA non-coding upstream 72326 19188469 ~ 19188878 (+)
G177443 NA non-coding upstream 79554 19181111 ~ 19181650 (+)
G177472 NA non-coding downstream 28567 19353968 ~ 19358749 (+)
G177479 NA non-coding downstream 72547 19397948 ~ 19401681 (+)
G177485 NA non-coding downstream 86225 19411626 ~ 19479842 (+)
G177506 NA non-coding downstream 168774 19494175 ~ 19494374 (+)
LOC111195062 NA non-coding downstream 201526 19526927 ~ 19551020 (+)
LOC103024155 si:dkey-81j8.6,LOC108440140,LOC107720718,LOC107572716,LOC107678005,LOC105904646 other upstream 702760 18539898 ~ 18558444 (+)
LOC103047412 golga7,LOC108276767,LOC107553707,LOC107687624,LOC107678053,LOC107586122 other upstream 930715 18324873 ~ 18330489 (+)
G177219 NA other upstream 1035071 18224273 ~ 18226133 (+)
xpo7 xpo7,LOC107678024,LOC107586117 other upstream 1086686 18138712 ~ 18174518 (+)
G176882 inpp5j other upstream 2214215 17042835 ~ 17046989 (+)
LOC111194983 NA other downstream 394900 19720301 ~ 19722560 (+)
LOC103042206 LOC108428882 other downstream 425541 19750942 ~ 19775791 (+)
LOC103043854 NA other downstream 763837 20089238 ~ 20096711 (+)
G177950 NA other downstream 813421 20138822 ~ 20139564 (+)
ier3ip1 ier3ip1,LOC106633120 other downstream 1070976 20396377 ~ 20399165 (+)

Expression


Co-expression Network