pum3 (pum3,k0020,LOC107705054,LOC107742987)


Basic Information

Item Value
gene id pum3
gene name pum3,k0020,LOC107705054,LOC107742987
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19919877 ~ 19932820 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255020.3
GCAGTGTCGCAAAATCAGCTCCTCGCCTTTTACGACACCTCGTTGCCGTAAAGTGTTTTCGTGTACACATGGTTGTTGATCATGGAGGCCAAACCAAGAAAGAAATCATTCGCTGCTAAAGATGGAAAGAAACCTGCCTTCAAGGGGAAAGGCAAATTTGAGGGTAAACCTCCCGGTAAACGCCCTTTCAAACCTCACAACGCAGACAAAAAGAAGCCTTTTGTAAAACCAGGAGGAAAAGGGGGAGCACAAAAATTCATGAAGCAAAAACCTACAGATGGAAAGTttgtgaaaaagagaaaactgtCCGACGGGGACAGCACAAAGGAAGAAGGATCTGAAGCAAAGAAACCCAAGTGGAACGAGtttaaacagaagaaaaaggAGCTGAAACAGAACCGACAACAGAACGACAGGAAAGACTCGTTCCAGACTGTGATTAGAGCCAAACAAGTCTGGGAGATGATCAGAAGGAAGGATTGTGACAAAGACAAGAAAGAAAAGTTGTTGAAAGAGCTTCGGGAGCTTGTTCGGGGAAAAGTTAAAACAatTGCATTTGCTCATGACTCGACGCGAGTGCTTCAGTGCTTTATACAGTTTGGAAATGATAAGCAAAGACAAGAAATCTTTGATGAACTCAAAGatCACATGGTGGAGCTGAGTAAATCCAAATATGCTAGAAACATTGTAAAGAAGTTTTTAATGTATGGGAGCAAACAGCAGGTGGGGGAGGTGATGCTGGCCTTCAAGGGTAAGGTCAGACAGATGTTGAGGCATTCGGAGGCTTCGTCTGTGGTGGAATACGCTTACAACGACAAGGCCATTCTCTCCCAGAGACTCATGCTTACAGAGGAGCTCTACGGCAACACCTTCCAAGTCTGCAAGTCCACAGTGTGTCCTACATTAGAGAAGGTGTTGGAGAGTAATCCAGAAAAACTGGAGAGTATAGCAGATGAAATGAAACAGATCCTCACACCAATGGCTCAGAAagAAGCAGTTATTAAACATTCACTCGTCCACAAGGTGTTCCTAGACTTTTTCCTCCACGCTCCAGATAAACTCAAATCAgAGATGATTGAGTCAATAAGGGAGTCAGTGGTGTACATGGCACACACGCACGATGGAGCCCGGGTCACCATGCACTGCCTGTGGCACGGCACATCCAAGgACAGGAAGGTtatcatcaaaactatgaagacGTATATTGCAAAGTTTGCAATGGGAGAGTATGCACACCTAGTCCTTCTTGCAGCTTTTGATTGCATTGACGACACCAAACTGGTCAAACAGGCTGTTCTATCAGAGCTGGTGAGTTCTCTGGCTGAGGTCATCAGCAATAAACATGGCAAGAAGGTGCTTCTCTATCTTCTCAGCCCTCGGGACCCCGCCCACCTGCTACCAGAAATCATTCAAGTGCTGGAGAAGGGTGACGGCAACGCTCACAGtaAAAAGGACGTGTCTGTGAGGCGTCAGGAGCTGCTGGAGGCCATATCTCCTCCCCTGTTGACGTACCTGTGTGAGAATACTCGCTCTATGGTGATGGATAAGGCCTGCAGCGTGGTGGTCAGCGACATCCTGGGAGCTGCAGTGGGAGACCTGTGGCCTGCTATGGGGGCTGTAGCTGAACTGGCGGCTGAAGACTTTGTAGCTGGTGGTGTGGATGGCCAGCTGCACATGGCTGAGCACCCTGCAGGCCATCTCGTGCTGAAATGGTTGATTGAGCAGGACGCCAAGATGAAGGCGGCAGGTCGAGAGGAACGTTTCTCCAGAGTTCTACTTGAAAAAGTGGGCCTAGATAAGCTGAAAACATGGGTGTCAGTCAACCGTGGTGCTATGGTCCTCTGCTGCCTCCTCCAGAGCGCAGACGAGGGAGTGGCGGAGGACGTGAGGACTGCTCTGCGCTCCATTATtcccaaactgaaaaaaattcaGAACTCAAAAGGAGTGGAGGCTCTGCTGGAGAAACTGGCCTAGAGTAAAATCAGTACTGATGAGCACCATACGTTCTTACAGGTTCTCACACTGCCTCCAACCGGTGCTGGACCTCCTCGCCAAGATCTGAAGATCCAACACCCAGACTTGCTTTCCTCTTTTTGGTTTAAGAGTAATTTTGTAATTCTGCAAGACATTCTCAGTCATGTTGTGCAAAGGATTTTGTAATTCTCATTTTATGAATTGTTACTTATGgatttatatgtatgtaaatacaaaataaataactacATACTCAA

Function

symbol description
pum3 Predicted to enable DNA binding activity and RNA binding activity. Acts upstream of or within germ cell migration. Predicted to be located in chromosome. Is expressed in several structures, including digestive system; female organism; immature eye; mesoderm; and nervous system.

NR:

description
pumilio homolog 3 isoform X1

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14844 PUF6; pumilio homology domain family member 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255020.3 True 2231 mRNA 0.47 18 19919877 19932820

Neighbor

gene id symbol gene type direction distance location
LOC103023409 co-prmt,LOC108428880 coding upstream 900 19896737 ~ 19918977 (+)
erbin erbin,erbb2ip,LOC107667260,LOC107726559,LOC107705051,LOC107742960 coding upstream 268459 19594101 ~ 19651418 (+)
nln nln,LOC107705053,LOC107667266,LOC107548669 coding upstream 397804 19503557 ~ 19522073 (+)
trappc13 trappc13,LOC107667267 coding upstream 444700 19459956 ~ 19475177 (+)
ppwd1 ppwd1 coding upstream 474219 19432487 ~ 19445658 (+)
LOC103030097 NA coding downstream 216438 20149258 ~ 20150118 (+)
LOC103027562 NA coding downstream 219641 20152461 ~ 20155315 (+)
smad2 smad2,LOC107743055,LOC107653131 coding downstream 296707 20229527 ~ 20257745 (+)
skor2 skor2,LOC107743073,LOC107653123,LOC107738854,LOC107558682 coding downstream 448869 20381689 ~ 20395156 (+)
hdhd2 hdhd2,LOC107738843,LOC107743237 coding downstream 470674 20403494 ~ 20407568 (+)
G177861 NA non-coding upstream 29164 19890267 ~ 19890713 (+)
LOC107197765 NA non-coding upstream 43487 19875366 ~ 19876390 (+)
G177830 NA non-coding upstream 86767 19795144 ~ 19833110 (+)
G177833 NA non-coding upstream 101167 19818233 ~ 19818710 (+)
G177826 tjp2 non-coding upstream 140341 19775840 ~ 19779536 (+)
LOC111195063 NA non-coding downstream 16776 19949596 ~ 19955474 (+)
G177885 NA non-coding downstream 57824 19990644 ~ 19995167 (+)
G177940 NA non-coding downstream 167756 20100576 ~ 20100802 (+)
LOC111195064 NA non-coding downstream 172514 20105334 ~ 20123848 (+)
G177955 NA non-coding downstream 225027 20157847 ~ 20163869 (+)
LOC103042206 LOC108428882 other upstream 144086 19750942 ~ 19775791 (+)
LOC111194983 NA other upstream 197317 19720301 ~ 19722560 (+)
LOC103024155 si:dkey-81j8.6,LOC108440140,LOC107720718,LOC107572716,LOC107678005,LOC105904646 other upstream 1361433 18539898 ~ 18558444 (+)
LOC103047412 golga7,LOC108276767,LOC107553707,LOC107687624,LOC107678053,LOC107586122 other upstream 1589388 18324873 ~ 18330489 (+)
G177219 NA other upstream 1693744 18224273 ~ 18226133 (+)
LOC103043854 NA other downstream 156418 20089238 ~ 20096711 (+)
G177950 NA other downstream 206002 20138822 ~ 20139564 (+)
ier3ip1 ier3ip1,LOC106633120 other downstream 463557 20396377 ~ 20399165 (+)
LOC103046694 LOC108440723,LOC108277161 other downstream 2194301 22127121 ~ 22315307 (+)
LOC103025565 scd5 other downstream 2523499 22456319 ~ 22465729 (+)

Expression


Co-expression Network