LOC103045381 (LOC108440153)


Basic Information

Item Value
gene id LOC103045381
gene name LOC108440153
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 18686670 ~ 18691097 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255027.3
tttttctcagtgaTGGATGCGAGTGAGGTGAATTGGACGGGGGGTGTAGAGTCTAATCTGACGCTGCTGCCGTATTACCTGCACTCCTCTGGGATGGCGCTGGGCTTCATCCTGTCGTATCTGCTGgttctgctgctgtgtgtgggcGGGAACGGACTGGTCTGTGTGGTGGTCCTGCGGAACAGGAACATGCGTTCCGTCACCAACCTCTTCATCCTCAACCTGGCCATCAGTGACCTGCTGGTGGGCGTGGTCTGTGTGCCCACCACGCTGATTGACAGCCTCATATCCGgctGGCCTTTTAGTCAGACCACCTGCACCCTCAGCAACCTGGTCCAGGGCATGTCCGTCTCCGCATCCGTCTTCACACTCGTCGCCATCGCTGTGGACAGATATACAGGCATCATGTACCCGTTCCGTCACCGACTGAGACCAATGACGGCTCTCTTCGCCATCTTCTTCATCTGGCTGCTAGCGTTCGCCATCATCTTCCCTTCGGCCACCACGCTGACTGTCATCCAACTGGAGGACACCTACATGATCCAAGACAACCAGATGTACCCGCTGTTCGTGTGTTACGAGGACTGGCCCAAAGCCGACATGCGACGCATCTACACCACCGTGATCTTCATCCACGTCTACCTGGCACCACTGGCCCTGATCAGCATCATGTACGGATGCATTTCCGCGAAGCTGTCGGGAAATCTGCAGCACCACGGGGGCTCCGAGGCCCGCAGGGGGCGCTCCCGGCGCAGGGTAAAGGTCATAAAGATGTTGATCATGGTGGCAGTGTTGTTCATGGTGTCATGGCTGCCGCTGTGGACACTAATGCTGCTGACGGACTACCAGGACCTGGACCAACAGCAGATTGACTTCCTCAGCAGCTACCTGTTCCCCGTCGCTCACTGGCTAGCCTTCTTTAACAGCGGCGTCAACCCCATCATCTACGGGTTCTTTAACGAGAACTTCCGCCGTGGGTTCCAGTCTGTAGTTGCCTGTCACTCTTGTGACACACCAATGATTGATATGCGCTCAAGAAGGTTTATGGTGCTGCCATCCAACCGGGTGTCCAGCGCTAACGGAGACGCCAAGAATCAGAAGAAAGAGCCGAGAGGACTCCCACTGCAGGCGATCCTACTGGAGGACCTGAACAGGCTAACAGGAGtcaaacagataaacagagcCTGGGCAGAGTGAGAACATTTTAAGTTTTACCAAATATACCTAAAATCAGTCAACAAGCTCCTACATATTGGGCAGCAAGTAAACAGTCAGTTCTTAAAGGTGATGATTGTTGTTGAAGCAGAAAAAATGGACATGAAGTGAAAGAATCTGAGACAATTTAACCAGAACCAAACTGTGATGTTCTAGACATTGACTGGGTCATAATAGTTCTTCAAAAAAAGGACAACCTCTGAACTTAAGAACTAGCAGCTACAGGGATGTTATGGGTGCTCAAGGCCTCCACCCATCTTACAACTTACAGGACTTGTAAGTTAAATGATCTACTGTAATGTAAGTTAATCTTGGTGCCAGGTGGGGACACATTCAGACTTCATTATAGGACATGCAGCTGAAGTTAATCTACACTCAAAATTAAACCATGCACAAAAATCTGGAACAATATTTGTCCGATTGGTGGAAAAATTGGTGGACAGTCTTGGTTAGGGTAGACAGAAAGATGACCAAAAGCACATTACATTAGCTGTGCACACAAAAAACAGGGTTGGTTTCTTGGACAGGATGTTTTTTACGTACAGAATGACGCACATTTCCAGAGATGCGAGTTTGTAATGTAAATGACGAGGAATAGCTGCCAGGTCAGAGCAGATATAGCAGAAATGGTGAGTGGCATTGAGGCCTCGAGTGGCCCCAAAAACACTGCAGGAGTCTGGAAGCCCCGAGCCCCCTAGCCACCCTGCTGCCATTTAGCCTGCCATTCAGCCTGCCAGTCTGCCGCTGTGCCCAAGAATGCCCCCCTGCCACCCGTCCCAAAGCACTGTTCCCTACTGCCAGAGCTCCGGACCTCTACTGCACACAACCAGAACAGAACACAAACCAcccacaaaccacacacacatatatacacacacacactaacacatttacacacacacacacagcacgcCGTCCTCCTGTCACTCAGCTTAATTCTGTAACCCGGACACAGTATTATAACTCACTAAACTATATGCTTaacaatcactggccactttattaaacacaactaCATTGTGTTGAATGaaattcactggccactttactggaaaccTTTGAGCACAGATTGATTGGccactttatataaaaaaaaacttcttatgCTTAaagctcactggccactttattggaaacacctctgCTTGTACAGGGATGTATTTGTTAATCACGCACACGCAGGTTCCTGTACTGTGTTAATGTAAATACgtgtataatgtatattgaGTGCACTGTGTAAAGCGTTGTTATAGTGTattgttatttatgtttatggaTTATGGATTGTGACAATGTGCAGAAAGATGTGAAACAGGGTGATTTAATGTATAAtctgtttgttttactgtacagaTCATTTGGGTTtatattgtctctctctctgtgtctgcagTAAAATGTTAGCATTGCTAATCGCTAAACGCCTCGATTGTGGCTATGTGAGATTTCTGTCAAAATAAAGGCATCACATACAGACACAGTGGTGCAGTTCTGGGAAGGTGGTTTAGATTCTCAGAGAAGTTATCTCCTATACACACATGGTGCTAATCTGAACCTA

Function

NR:

description
PREDICTED: neuropeptide FF receptor 1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255027.3 True 2773 mRNA 0.48 3 18686670 18691097

Neighbor

gene id symbol gene type direction distance location
LOC103045069 bmp1,LOC108440159,LOC105014870,LOC107710833,LOC107661342 coding downstream 1904 18648786 ~ 18684766 (-)
pcna pcna,LOC107658578,LOC107583397 coding downstream 77537 18604544 ~ 18609133 (-)
LOC103026456 kcnip3,kcnip3b,LOC107092684,LOC106535652,LOC103473704,LOC103026456,LOC108440143,LOC107678047,LOC107572711,LOC107720714 coding downstream 90856 18579751 ~ 18595814 (-)
LOC103025819 rassf2 coding downstream 108905 18571229 ~ 18577765 (-)
LOC103025514 NA coding downstream 116608 18565701 ~ 18570062 (-)
LOC103045990 aak1b,LOC108440145,LOC107583399 coding upstream 55151 18746248 ~ 18791052 (-)
brf2 NA coding upstream 149974 18841071 ~ 18847381 (-)
LOC103028676 NA coding upstream 156898 18847995 ~ 18870141 (-)
LOC103029209 gpat4,LOC108440151,LOC108277038,LOC107746208,LOC107558124 coding upstream 182020 18873117 ~ 18883171 (-)
LOC103029848 ggt1 coding upstream 303777 18994874 ~ 19005861 (-)
G177609 NA non-coding downstream 54000 18632414 ~ 18632670 (-)
G177607 NA non-coding downstream 57116 18629299 ~ 18629554 (-)
G177605 NA non-coding downstream 60138 18626289 ~ 18626532 (-)
LOC111195060 NA non-coding downstream 61949 18620199 ~ 18624721 (-)
G177596 NA non-coding downstream 121357 18561352 ~ 18565313 (-)
G177626 NA non-coding upstream 45767 18736864 ~ 18740579 (-)
G177617 NA non-coding upstream 52413 18743510 ~ 18798134 (-)
G177644 NA non-coding upstream 136506 18827603 ~ 18829287 (-)
G177669 NA non-coding upstream 259755 18950852 ~ 18954940 (-)
G177678 NA non-coding upstream 292715 18983812 ~ 18987415 (-)
LOC111195059 NA other downstream 68058 18614892 ~ 18618612 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 155035 18485642 ~ 18531635 (-)
G177568 NA other downstream 283662 18397582 ~ 18403008 (-)
G177526 NA other downstream 512145 18171849 ~ 18174525 (-)
stoml2 stoml2,LOC107686459,LOC107688641,LOC107569390,LOC106563216 other downstream 2896026 15780555 ~ 15790644 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other upstream 195931 18887028 ~ 18934600 (-)
G177704 NA other upstream 400049 19091146 ~ 19092146 (-)
LOC103035567 LOC103035567,LOC108425166 other upstream 428689 19119786 ~ 19128123 (-)
LOC111194984 sh2d4a other upstream 1047552 19738649 ~ 19739313 (-)
G178173 NA other upstream 2600425 21291522 ~ 21295833 (-)

Expression


Co-expression Network