LOC103047514


Basic Information

Item Value
gene id LOC103047514
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19182249 ~ 19185669 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255034.2
CAGGTGAGGGTTGTGCAGGTACAGGTGAGGTACAGGTAAAGTGACcaaactgtttcttttgaaACAACAAATGAATTTTGGGATTTTTTCATTTCTATGCTGTTTTACTGAAGAAGATTTCTCTCAGATTCTCAGAGGCAGTTCAGAATTATTTGTGAAAATGGAAAGCATTTCAGTGAAGAATCAGACGAGTGTTTCGGTGGTTAGCGAGTTTATTCTGTTGGGTTTTGCCGGACTGCAGGCGGAGTATTTTGGACTGGTGGGGGCGCTGTTCCTGAGTGTGTACATTACGGTGCTGgtcagtaactctgtgttcgtGATGATGTTGTTGGTGGAGCCGCGGCTGCAGAAGCCGATGTACATTATCATGATGAACCTGGCGTTGGCGGATATCGGGTTCTGCACCGTGGTCCTGCCTAAAACCGTGTCCCGGTATCTCCTCGACGGCGGCACCATCTCCTTCCATGCCTGCATGTTCCAGAGGCTGCTGGTCCATTACTTCGCCAACGTCAACTTCCTGGTGATGACGACGATGGCTCTGGATCGGTTCCTGGCGGTCTGCTACCCCCTCAGATATCCTGTTCTGATGACCAACCGGATCATGATCCTCCTAAATGGGATCTCATGGACCGTTTCCATGATCATCCCGGCCTTCATCACCACTCAGATGTCCCAGATGCCATTCTGCGGGCCGAACCGGATCGTCCACTGCTTTTGTGACACAGCGTTCTTATACAGCCTGGTCTGTTCCAACGTCAGTGCCCAGAGCTTCGTCTTCACCTCGTTAGTGACGAGCATCATCTCGCTGACTCTCCTGATCATCACTTTCTTTTATCTCAGCATCGTGGTGTCCGTCATGAGAATGTCCAGCAGCCTTAGCAAAACCAAGGCCTTTTCCACCTGCGGAACTCAGCTCTGCATCATCTGCATTCACTACGTCCCACGATTCGTTGTCCTGACCTCGCCGTACCTGCCCAATGTCAAGTTCGACATCAACCATCGAATCGCCTTCACACTCACCTACTGGCTGATCCCGCCTCTCCTTAACCCCTTCCTGTACTTCTTCAGAACCAAAGAGATCCGTCAGCTCTTCCACAAATGGTGTTCCTGTGCTCAGAGGCACGTGAGGCGGAGCCAAATCAATATTCTGTCTGTGTCTAACTGATTGTTCTTTATATTAATCtattaaatattgaataataataatcaataaatatgtttactcataataactgtaataattaatgtgtttaataaatgcTGATTTACAAGAGAAGAGTTTCAgctgtttacattttattgcattaaaaTTACTAATCAGTGTTTGGACACAGCAAAGAATGTtatgaaacacagtggagaaGATTGGATTTAATTCAGGAgtttaacaataaaacaaaatcatttAATCATTAGGTCACTTTTACAGTTcacaaatttttttttctaattttatttcaattttttcccattttctctcatttacacagccaattacccaacccagtcATTAGTACTCCCTCTATCATTAGTAattccccaacacaccagggtgaagactaacacatgcttcctccgatacatgtgaagccagccaccact

Function

GO:

id name namespace
GO:0050896 response to stimulus biological_process
GO:0016020 membrane cellular_component
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255034.2 True 1602 mRNA 0.45 2 19182249 19185669

Neighbor

gene id symbol gene type direction distance location
LOC103036397 march5l,LOC103036397,LOC108425180,LOC107689266,LOC107718703,LOC107602066,LOC107588990 coding downstream 19742 19158102 ~ 19162507 (-)
dusp11 NA coding downstream 48871 19129207 ~ 19133378 (-)
dgcr2 dgcr2 coding downstream 60592 19112034 ~ 19121657 (-)
LOC103047211 LOC108425134 coding downstream 76113 19099862 ~ 19106136 (-)
rhof rhof,LOC108425170,LOC105014892,LOC106568222 coding downstream 109720 19063550 ~ 19072529 (-)
inip inip,LOC107658659,LOC107558675,LOC107571239 coding upstream 25211 19210880 ~ 19213378 (-)
lin54 lin54,LOC107744261 coding upstream 34165 19219834 ~ 19235608 (-)
plac8 plac8 coding upstream 60333 19246002 ~ 19249795 (-)
srek1ip1 srek1ip1,LOC107658680,LOC107744254,LOC107685105,LOC107713259 coding upstream 70420 19256089 ~ 19259917 (-)
adamts6 adamts6,LOC107685101,LOC107713302,LOC107744255 coding upstream 172453 19358122 ~ 19430590 (-)
G177729 acty,LOC103036907,LOC108425179,LOC107658603,LOC106563059,LOC107588989 non-coding downstream 13720 19166090 ~ 19168529 (-)
G177728 actr1b,actr1,LOC108425179,LOC103036907,LOC107588989,LOC107658603,LOC107602067,LOC106563059 non-coding downstream 17482 19161617 ~ 19164767 (-)
G177685 NA non-coding downstream 23103 19110161 ~ 19159146 (-)
G177717 NA non-coding downstream 35210 19144278 ~ 19147039 (-)
G177688 NA non-coding downstream 103915 19075375 ~ 19078334 (-)
G177742 kiaa1958 non-coding upstream 14880 19200549 ~ 19202732 (-)
G177735 NA non-coding upstream 28637 19214306 ~ 19216110 (-)
G177734 NA non-coding upstream 31446 19217115 ~ 19219395 (-)
G177746 cops4,csn4,LOC106562268 non-coding upstream 51682 19237351 ~ 19240764 (-)
G177751 cwc27,LOC107744252,LOC107713303 non-coding upstream 75352 19261021 ~ 19266467 (-)
LOC103035567 LOC103035567,LOC108425166 other downstream 54126 19119786 ~ 19128123 (-)
G177704 NA other downstream 90103 19091146 ~ 19092146 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other downstream 247649 18887028 ~ 18934600 (-)
LOC111195059 NA other downstream 563637 18614892 ~ 18618612 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 650614 18485642 ~ 18531635 (-)
LOC111194984 sh2d4a other upstream 552980 19738649 ~ 19739313 (-)
G178173 NA other upstream 2105853 21291522 ~ 21295833 (-)
G178267 grin3a,LOC107710005,LOC107750958 other upstream 2747850 21933519 ~ 21933831 (-)
G178426 NA other upstream 3269828 22455497 ~ 22456779 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other upstream 3315649 22501318 ~ 22509783 (-)

Expression


Co-expression Network