LOC103023409 (co-prmt,LOC108428880)


Basic Information

Item Value
gene id LOC103023409
gene name co-prmt,LOC108428880
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19896737 ~ 19918977 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255042.3
GCCTCCCCTCTGTCTCCGCCCCCCGTCCCAACTCTTCCTCTGAGCTCCAGCAGCCCCTCTCTCTGCTGCCGGCACTTTTAGCAGCAGCTTTACAGCAGCAGAATGCCTCCAGGGCCTGTAGTAGGAAGCTGATGATCATGCAGGTAAATTAACACAGGTTTAAATGATGGGCAGCGGTCAGGAGCAGAGCCGTTTCTTCATCAGTCTGGTGTTTCTGAACGATAGCGGGACTGAGGGTGAGCTACAGGTCTCAGGAAAGGACCAGCATCAGGACCTCAGTGTGCAGGTCAGCAGAGACACAGCGGGCATCACTCTCACTGTGGAGAACGGTGATGGAGTATGTGTCTTCAGGTTCTCCATCTCCAGGGAGACGGAGTGCTGCCGGGTGGGCGGTCAGTCCTTCCTCATCACCACCAGCTGTGTGAGCGTCCTGCTGCGATTCCGTACTCGACCAGACTTCCAGAGTTTCCACAGTTTGCTAAAGTCATGGTTGGACTCCAGCAGGGAGATGTCAGTATTTGACCAGAGGACAGACAACTCATCTGCCCTCCAGTACTTTCAGTTTTATGGCTGTCTCTCTCAGCAGCAGAACATGCTTCAGGACTTTCTGAGGACGGCCACGTACCAAAAAGCCATTCTACTGAACGACGTCGACTTCAGAGATAAGGTAGTGCTGGATGTGGGCTGTGGAACTGGAATACTCTCTTTCTTCGCTGTTCAGGCTGGAGCTAAGAGAGTGTATGCAGTGGAGGCCAGCTCAGTCGCCAAACATGCAGAAGTTCTGGTCAGGAGTAACGGCATGTCGGACAGAATCACTGTGCTAAACGGGAAGATCGAGGAAGTTTCCTGTCCAGAGAAAGTGGATGTCATCATCTCAGAGCCTATTGGATACATGCTCCTCAACGAGAGGATGCTGGAGAGCTACCTTCACTCCAAACACTGGCTGAAGCCCAAAGGTATGATGTTCCCAACCTTCAGTGACATCCATCTGGCTCCCTTTACTGATGAGCAGCTTTACATGGAGCACCATGCACGCTCCAGCTTCTGGCTCCAGACGAGTTTTTATGGGGTAAACCTGAGTGGTCTCCATCCTGTGGCCGTAGAGGAGTTCTTCAGACAACCAATAGTGGACACTTTTGATATGCAGATTCTAATGGCCAGGTCTGTAAAATACACCATTAACTTCCTTGAAGCTAAAGAAGAAGACTTGCATAGGATGGAAATTCCCTTTGTCTTCAAGCTGCTGCAGTCAGGACTGATTCACGGCCTGGCGTTCTGGTTTGATGTGGCGTTTGTAGGATCGAGGATGACTGTATGGCTGTCCACCGCCCCCCACGAGCCCCTCTCTCACTGGTACCAGGTCCGTTGTCTCCTCCAGACTCCTCTCTTTGCCAAAATGGGACAGACCCTGTCTGGACAGGTTCTACTTATTGCCAACAAGAGacAGAGTTATGATATTCACATCACAGCAGTCGTCGATGAGTCCGGCTTTAAATCTGGAAACACGTTGGATCTCAAAAATCCTTTCTTTCGGTAG
>XM_022681214.1
CTCCCCTCTGTCTCCGCCCCCCGTCCCAACTCTTCCTCTGAGCTCCAGCAGCCCCTCTCTCTGCTGCCGGCACTTTTAGCAGCAGCTTTACAGCAGCAGAATGCCTCCAGGGCCTGTAGTAGGAAGCTGATGATCATGCAGGTAAATTAACACAGGTTTAAATGATGGGCAGCGGTCAGGAGCAGAGCCGTTTCTTCATCAGTCTGGTGTTTCTGAACGATAGCGGGACTGAGGGTGAGCTACAGGTCTCAGGAAAGGACCAGCATCAGGACCTCAGTGTGCAGGTCAGCAGAGACACAGCGGGCATCACTCTCACTGTGGAGAACGGTGATGGAGTATGTGTCTTCAGGTTCTCCATCTCCAGGGAGACGGAGTGCTGCCGGGTGGGCGGTCAGTCCTTCCTCATCACCACCAGCTGTGTGAGCGTCCTGCTGCGATTCCGTACTCGACCAGACTTCCAGAGTTTCCACAGTTTGCTAAAGTCATGGTTGGACTCCAGCAGGGAGATGTCAGTATTTGACCAGAGGACAGACAACTCATCTGCCCTCCAGTACTTTCAGTTTTATGGCTGTCTCTCTCAGCAGCAGAACATGCTTCAGGACTTTCTGAGGACGGCCACGTACCAAAAAGCCATTCTACTGAACGACGTCGACTTCAGAGATAAGGTAGTGCTGGATGTGGGCTGTGGAACTGGAATACTCTCTTTCTTCGCTGTTCAGGCTGGAGCTAAGAGAGTGTATGCAGTGGAGGCCAGCTCAGTCGCCAAACATGCAGAAGTTCTGGTCAGGAGTAACGGCATGTCGGACAGAATCACTGTGCTAAACGGGAAGATCGAGGAAGTTTCCTGTCCAGAGAAAGTGGATGTCATCATCTCAGAGCCTATTGGATACATGCTCCTCAACGAGAGGATGCTGGAGAGCTACCTTCACTCCAAACACTGGCTGAAGCCCAAAGGTATGATGTTCCCAACCTTCAGTGACATCCATCTGGCTCCCTTTACTGATGAGCAGCTTTACATGGAGCACCATGCACGCTCCAGCTTCTGGCTCCAGACGAGTTTTTATGGGGTAAACCTGAGTGGTCTCCATCCTGTGGCCGTAGAGGAGTTCTTCAGACAACCAATAGTGGACACTTTTGATATGCAGATTCTAATGGCCAGGTCTGTAAAATACACCATTAACTTCCTTGAAGCTAAAGAAGAAGACTTGCATAGGATGGAAATTCCCTTTGTCTTCAAGCTGCTGCAGTCAGGACTGATTCACGGCCTGGCGTTCTGGTTTGATGTGGCGTTTGTAGGATCGAGGATGACTGTATGGCTGTCCACCGCCCCCCACGAGCCCCTCTCTCACTGGTACCAGGTCCGTTGTCTCCTCCAGACTCCTCTCTTTGCCAAAATGGGACAGACCCTGTCTGGACAGGTTCTACTTATTGCCAACAAGAGacAGAGTTATGATATTCACATCACAGCAGTCGTCGATGAGTCCGGCTTTAAATCTGGAAACACGTTGGATCTCAAAAATCCTTTCTTTCGGTATGCCTGAGTCCGCTATATAAACCTTCTGCTTTGAGACCACATTCAGACTGACATCTGCCCGAAGAAGCATCACATAATCTGAaataattcacacttttaataaaaacaatgtttttgctgtttgtaaTGATGTTTTACACCCAGTGTGTTGCAAATATCTCTGctttatgtaaattaaaaataaataaaacatttttaccagTG
>XM_022681215.1
CCTCCCCTCTGTCTCCGCCCCCCGTCCCAACTCTTCCTCTGAGCTCCAGCAGCCCCTCTCTCTGCTGCCGGCACTTTTAGCAGCAGCTTTACAGCAGCAGAATGCCTCCAGGGCCTGTAGTAGGAAGCTGATGATCATGCAGGTAAATTAACACAGGTTTAAATGATGGGCAGCGGTCAGGAGCAGAGCCGTTTCTTCATCAGTCTGGTGTTTCTGAACGATAGCGGGACTGAGGGTGAGCTACAGGTCTCAGGAAAGGACCAGCATCAGGACCTCAGTGTGCAGGTCAGCAGAGACACAGCGGGCATCACTCTCACTGTGGAGAACGGTGATGGAGTATGTGTCTTCAGGTTCTCCATCTCCAGGGAGACGGAGTGCTGCCGGGTGGGCGGTCAGTCCTTCCTCATCACCACCAGCTGTGTGAGCGTCCTGCTGCGATTCCGTACTCGACCAGACTTCCAGAGTTTCCACAGTTTGCTAAAGTCATGGTTGGACTCCAGCAGGGAGATGTCAGTATTTGACCAGAGGACAGACAACTCATCTGCCCTCCAGTACTTTCAGCAGCAGAACATGCTTCAGGACTTTCTGAGGACGGCCACGTACCAAAAAGCCATTCTACTGAACGACGTCGACTTCAGAGATAAGGTAGTGCTGGATGTGGGCTGTGGAACTGGAATACTCTCTTTCTTCGCTGTTCAGGCTGGAGCTAAGAGAGTGTATGCAGTGGAGGCCAGCTCAGTCGCCAAACATGCAGAAGTTCTGGTCAGGAGTAACGGCATGTCGGACAGAATCACTGTGCTAAACGGGAAGATCGAGGAAGTTTCCTGTCCAGAGAAAGTGGATGTCATCATCTCAGAGCCTATTGGATACATGCTCCTCAACGAGAGGATGCTGGAGAGCTACCTTCACTCCAAACACTGGCTGAAGCCCAAAGGTATGATGTTCCCAACCTTCAGTGACATCCATCTGGCTCCCTTTACTGATGAGCAGCTTTACATGGAGCACCATGCACGCTCCAGCTTCTGGCTCCAGACGAGTTTTTATGGGGTAAACCTGAGTGGTCTCCATCCTGTGGCCGTAGAGGAGTTCTTCAGACAACCAATAGTGGACACTTTTGATATGCAGATTCTAATGGCCAGGTCTGTAAAATACACCATTAACTTCCTTGAAGCTAAAGAAGAAGACTTGCATAGGATGGAAATTCCCTTTGTCTTCAAGCTGCTGCAGTCAGGACTGATTCACGGCCTGGCGTTCTGGTTTGATGTGGCGTTTGTAGGATCGAGGATGACTGTATGGCTGTCCACCGCCCCCCACGAGCCCCTCTCTCACTGGTACCAGGTCCGTTGTCTCCTCCAGACTCCTCTCTTTGCCAAAATGGGACAGACCCTGTCTGGACAGGTTCTACTTATTGCCAACAAGAGacAGAGTTATGATATTCACATCACAGCAGTCGTCGATGAGTCCGGCTTTAAATCTGGAAACACGTTGGATCTCAAAAATCCTTTCTTTCGGTATGCCTGAGTCCGCTATATAAACCTTCTGCTTTGAGACCACATTCAGACTGACATCTGCCCGAAGAAGCATCACATAATCTGAaataattcacacttttaataaaaacaatgtttttgctgtttgtaaTGATGTTTTACACCCAGTGTGTTGCAAATATCTCTGctttatgtaaattaaaaataaataaaacatttttaccagTG
>XM_022681216.1
CTCCCCTCTGTCTCCGCCCCCCGTCCCAACTCTTCCTCTGAGCTCCAGCAGCCCCTCTCTCTGCTGCCGGCACTTTTAGCAGCAGCTTTACAGCAGCAGAATGCCTCCAGGGCCTGTAGTAGGAAGCTGATGATCATGCAGGTAAATTAACACAGGTTTAAATGATGGGCAGCGGTCAGGAGCAGAGCCGTTTCTTCATCAGTCTGGTGTTTCTGAACGATAGCGGGACTGAGGGTGAGCTACAGGTCTCAGGAAAGGACCAGCATCAGGACCTCAGTGTGCAGGTCAGCAGAGACACAGCGGGCATCACTCTCACTGTGGAGAACGGTGATGGAGTATGTGTCTTCAGGTTCTCCATCTCCAGGGAGACGGAGTGCTGCCGGGTGGGCGGTCAGTCCTTCCTCATCACCACCAGCTGTGTGAGCGTCCTGCTGCGATTCCGTACTCGACCAGACTTCCAGAGTTTCCACAGTTTGCTAAAGTCATGGTTGGACTCCAGCAGGGAGATGTCAGTATTTGACCAGAGGACAGACAACTCATCTGCCCTCCAGTACTTTCAGCAGAACATGCTTCAGGACTTTCTGAGGACGGCCACGTACCAAAAAGCCATTCTACTGAACGACGTCGACTTCAGAGATAAGGTAGTGCTGGATGTGGGCTGTGGAACTGGAATACTCTCTTTCTTCGCTGTTCAGGCTGGAGCTAAGAGAGTGTATGCAGTGGAGGCCAGCTCAGTCGCCAAACATGCAGAAGTTCTGGTCAGGAGTAACGGCATGTCGGACAGAATCACTGTGCTAAACGGGAAGATCGAGGAAGTTTCCTGTCCAGAGAAAGTGGATGTCATCATCTCAGAGCCTATTGGATACATGCTCCTCAACGAGAGGATGCTGGAGAGCTACCTTCACTCCAAACACTGGCTGAAGCCCAAAGGTATGATGTTCCCAACCTTCAGTGACATCCATCTGGCTCCCTTTACTGATGAGCAGCTTTACATGGAGCACCATGCACGCTCCAGCTTCTGGCTCCAGACGAGTTTTTATGGGGTAAACCTGAGTGGTCTCCATCCTGTGGCCGTAGAGGAGTTCTTCAGACAACCAATAGTGGACACTTTTGATATGCAGATTCTAATGGCCAGGTCTGTAAAATACACCATTAACTTCCTTGAAGCTAAAGAAGAAGACTTGCATAGGATGGAAATTCCCTTTGTCTTCAAGCTGCTGCAGTCAGGACTGATTCACGGCCTGGCGTTCTGGTTTGATGTGGCGTTTGTAGGATCGAGGATGACTGTATGGCTGTCCACCGCCCCCCACGAGCCCCTCTCTCACTGGTACCAGGTCCGTTGTCTCCTCCAGACTCCTCTCTTTGCCAAAATGGGACAGACCCTGTCTGGACAGGTTCTACTTATTGCCAACAAGAGacAGAGTTATGATATTCACATCACAGCAGTCGTCGATGAGTCCGGCTTTAAATCTGGAAACACGTTGGATCTCAAAAATCCTTTCTTTCGGTATGCCTGAGTCCGCTATATAAACCTTCTGCTTTGAGACCACATTCAGACTGACATCTGCCCGAAGAAGCATCACATAATCTGAaataattcacacttttaataaaaacaatgtttttgctgtttgtaaTGATGTTTTACACCCAGTGTGTTGCAAATATCTCTGctttatgtaaattaaaaataaataaaacatttttaccagTG
>XM_022681217.1
AGCCTCCCCTCTGTCTCCGCCCCCCGTCCCAACTCTTCCTCTGAGCTCCAGCAGCCCCTCTCTCTGCTGCCGGCACTTTTAGCAGCAGCTTTACAGCAGCAGAATGCCTCCAGGGCCTGTAGTAGGAAGCTGATGATCATGCAGGTAAATTAACACAGGTTTAAATGATGGGCAGCGGTCAGGAGCAGAGCCGTTTCTTCATCAGTCTGGTGTTTCTGAACGATAGCGGGACTGAGGGTGAGCTACAGGTCTCAGGAAAGGACCAGCATCAGGACCTCAGTGTGCAGGTCAGCAGAGACACAGCGGGCATCACTCTCACTGTGGAGAACGGTGATGGAGTATGTGTCTTCAGGTTCTCCATCTCCAGGGAGACGGAGTGCTGCCGGGTGGGCGGTCAGTCCTTCCTCATCACCACCAGCTGTGTGAGCGTCCTGCTGCGATTCCGTACTCGACCAGACTTCCAGAGTTTCCACAGTTTGCTAAAGTCATGGTTGGACTCCAGCAGGGAGATGTCAGTATTTGACCAGAGGACAGACAACTCATCTGCCCTCCAGTACTTTCAGCAGCAGAACATGCTTCAGGACTTTCTGAGGACGGCCACGTACCAAAAAGCCATTCTACTGAACGACGTCGACTTCAGAGATAAGGTAGTGCTGGATGTGGGCTGTGGAACTGGAATACTCTCTTTCTTCGCTGTTCAGGCTGGAGCTAAGAGAGTGTATGCAGTGGAGGCCAGCTCAGTCGCCAAACATGCAGAAGTTCTGGTCAGGAGTAACGGCATGTCGGACAGAATCACTGTGCTAAACGGGAAGATCGAGGAAGTTTCCTGTCCAGAGAAAGTGGATGTCATCATCTCAGAGCCTATTGGATACATGCTCCTCAACGAGAGGATGCTGGAGAGCTACCTTCACTCCAAACACTGGCTGAAGCCCAAAGGTATGATGTTCCCAACCTTCAGTGACATCCATCTGGCTCCCTTTACTGATGAGCAGCTTTACATGGAGCACCATGCACGCTCCAGCTTCTGGCTCCAGACGAGTTTTTATGGGGTAAACCTGAGTGGTCTCCATCCTGTGGCCGTAGAGGAGTTCTTCAGACAACCAATAGTGGACACTTTTGATATGCAGATTCTAATGGCCAGGTCTGTAAAATACACCATTAACTTCCTTGAAGCTAAAGAAGAAGACTTGCATAGGATGGAAATTCCCTTTGTCTTCAAGCTGCTGCAGTCAGGACTGATTCACGGCCTGGCGTTCTGGTTTGATGTGGCGTTTGTAGGATCGAGGATGACTGTATGGCTGTCCACCGCCCCCCACGAGCCCCTCTCTCACTGGTACCAGGTCCGTTGTCTCCTCCAGACTCCTCTCTTTGCCAAAATGGGACAGACCCTGTCTGGACAGGTTCTACTTATTGCCAACAAGAGacAGAGTTATGATATTCACATCACAGCAGTCGTCGATGAGTCCGGCTTTAAATCTGGAAACACGTTGGATCTCAAAAATCCTTTCTTTCGGTAG

Function

NR:

description
PREDICTED: histone-arginine methyltransferase CARM1-like

GO:

id name namespace
GO:0006479 protein methylation biological_process
GO:0009405 pathogenesis biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K05931 CARM1, PRMT4; type I protein arginine methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255042.3 False 1537 mRNA 0.51 12 19896738 19917053
XM_022681214.1 True 1738 mRNA 0.49 13 19896740 19918977
XM_022681215.1 False 1718 mRNA 0.49 13 19896739 19918977
XM_022681216.1 False 1714 mRNA 0.49 13 19896740 19918977
XM_022681217.1 False 1517 mRNA 0.51 12 19896737 19917053

Neighbor

gene id symbol gene type direction distance location
erbin erbin,erbb2ip,LOC107667260,LOC107726559,LOC107705051,LOC107742960 coding upstream 245319 19594101 ~ 19651418 (+)
nln nln,LOC107705053,LOC107667266,LOC107548669 coding upstream 374664 19503557 ~ 19522073 (+)
trappc13 trappc13,LOC107667267 coding upstream 421560 19459956 ~ 19475177 (+)
ppwd1 ppwd1 coding upstream 451079 19432487 ~ 19445658 (+)
cwc27 cwc27,LOC102784682 coding upstream 571336 19261204 ~ 19325401 (+)
pum3 pum3,k0020,LOC107705054,LOC107742987 coding downstream 900 19919877 ~ 19932820 (+)
LOC103030097 NA coding downstream 230281 20149258 ~ 20150118 (+)
LOC103027562 NA coding downstream 233484 20152461 ~ 20155315 (+)
smad2 smad2,LOC107743055,LOC107653131 coding downstream 310550 20229527 ~ 20257745 (+)
skor2 skor2,LOC107743073,LOC107653123,LOC107738854,LOC107558682 coding downstream 462712 20381689 ~ 20395156 (+)
G177861 NA non-coding upstream 6024 19890267 ~ 19890713 (+)
LOC107197765 NA non-coding upstream 20347 19875366 ~ 19876390 (+)
G177830 NA non-coding upstream 63627 19795144 ~ 19833110 (+)
G177833 NA non-coding upstream 78027 19818233 ~ 19818710 (+)
G177826 tjp2 non-coding upstream 117201 19775840 ~ 19779536 (+)
LOC111195063 NA non-coding downstream 30619 19949596 ~ 19955474 (+)
G177885 NA non-coding downstream 71667 19990644 ~ 19995167 (+)
G177940 NA non-coding downstream 181599 20100576 ~ 20100802 (+)
LOC111195064 NA non-coding downstream 186357 20105334 ~ 20123848 (+)
G177955 NA non-coding downstream 238870 20157847 ~ 20163869 (+)
LOC103042206 LOC108428882 other upstream 120946 19750942 ~ 19775791 (+)
LOC111194983 NA other upstream 174177 19720301 ~ 19722560 (+)
LOC103024155 si:dkey-81j8.6,LOC108440140,LOC107720718,LOC107572716,LOC107678005,LOC105904646 other upstream 1338293 18539898 ~ 18558444 (+)
LOC103047412 golga7,LOC108276767,LOC107553707,LOC107687624,LOC107678053,LOC107586122 other upstream 1566248 18324873 ~ 18330489 (+)
G177219 NA other upstream 1670604 18224273 ~ 18226133 (+)
LOC103043854 NA other downstream 170261 20089238 ~ 20096711 (+)
G177950 NA other downstream 219845 20138822 ~ 20139564 (+)
ier3ip1 ier3ip1,LOC106633120 other downstream 477400 20396377 ~ 20399165 (+)
LOC103046694 LOC108440723,LOC108277161 other downstream 2208144 22127121 ~ 22315307 (+)
LOC103025565 scd5 other downstream 2537342 22456319 ~ 22465729 (+)

Expression


Co-expression Network