ppp2cb (ppp2cb,LOC107758729)


Basic Information

Item Value
gene id ppp2cb
gene name ppp2cb,LOC107758729
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 23503307 ~ 23514711 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255251.3
CGCGCATCCTCCGCGAATGCCTTTGCGATGACGCCGATATGAGGCAAACGCAGAGCGGCCATTACACAGCGAGTTTCCCAGGGAAGGTCGGGAGGGAGAGAGCGGGGGAGCCACTGAAATAGATCCGCCACACCGCGCCGTAGGTCCCGCCGAGCCGCCCTCCATCAGCACGCGTACAGACGGGAGAACGCGCGGAGTCGCCTGTTTTAGAGCCGCGGTCTCCCCGCTTTCGACGGGTTCAGCTAGATAAAGTGTCCGGGGTAAAGCAGCCCTCGGTCGGCTAAGCTAAGCCGAGCTAAGCGGCCGCCCGCACCGCTGAGCCTAAATCCAGCCGGCTGGtcgctaggttagctagcgaGCTAAACGACGCCAGCAGGAGCACACAGCCGGTTCTGAGGGGGGTTTCACCGGGTACCGGATTACACAGACCTCCGCTCAGCCCCAGAAACCATAGCTAGAGGCCCGTACTGCGCTCCAGGACGCGCCGAGGATGGATGATAAAGCCTTTACTAAAGAATTAGACCAGTGGGTCGAACAGCTGAACGAGTGTAAGCAGCTCACCGAGAACCAAGTGCGGACCCTCTGCGAGAAGGCTAAAGAGATCCTGACTAAGGAGTCCAATGTACAGGAGGTGCGCTGCCCCGTCACAGTATGTGGCGATGTGCACGGGCAGTTCCACGACCTCATGGAGCTGTTCAGAATTGGAGGAAAGTCGCCCGACACCAACTATCTGTTTATGGGCGACTACGTAGACAGAGGCTACTACTCGGTGGAAACGGTCACACTTCTTGTTGCGCTAAAGGTCGTTTTCCAGAACGCATAACGATATTGCGCGGAAACCACGAGAGCAGACAGATTACACAGGTTTATGGATTCTATGACGAGTGCTTGAGGAAATATGGCAATGCAAATGTCTGGAAATATTTCACTGACCTCTTCGACTACCTACCCCTCACAGCTCTGGTTGATGGACAGATCTTCTGTCTGCATGGTGGGTTGTCTCCATCGATAGACACATTGGATCACATTCGTGCTTTAGATCGTCTCCAGGAGGTGCCACATGAGGGCCCAATGTGTGATCTGCTGTGGTCAGACCCTGATGACCGCGGAGGCTGGGGCATCTCTCCCAGGGGTGCTGGATACACCTTTGGCCAAGACATTTCTGAAACTTTTAACCATGCCAATGGTCTTACCCTGGTCTCCCGTGCCCATCAACTTGTTATGGAGGGATACAACTGGTGTCACGATAGAAATGTTGTCACCATATTCAGTGCGCCAAACTACTGCTATCGCTGTGGCAACCAGGCTGCCATAATGGAACTGGATGATACTCTTAAATATTCCTTCCTTCAGTTTGATCCTGCACCTCGGCGCGGAGAGCCTCACGTCACCCGCCGCACCCCCGATTACTTCTTATAAACACGCACTGGCCTGACGTAGGAACACGACCTCTAAAGTAAACACCACCACAATGCGGCAGATCCCGACATGTATACATTTTCATCCCAccgcgcgagtgtgtgtgtgtgtgtgtgtatatatacggGGATGTGTcatgacatgacatgaaagCACTAACATGGACCAAAATGTGCCATACAAGCATTTAATGCAGAATTACAAATTGCCCTGTGTCTCAGTACTGCTACACAGTGTCCCGTTTAGCCTATAGTGCAATTGCCTGCTGTATACTATGGATAGTAATGTTCTCTTTGTTCTTGAATTGTACATTACTctgagcaaaacaaaaaaagtgatcTTTAGCTTTTCTCCCCTTCGGTATCACTGGACAAAAACGATGTACTTTAAGTTGGCGATGCCCGGCATGTGACATAAGGTAACATTTTATACAAGTGCACAAGCTTACATCCTTTCCTGTCTTCACCAAAAAAGAAACACTATGCTATTCTATTGGGAATGAATGCTTAATCTGAGGGAGAAGCCTCTTCCTTTTTGGGAGTGTATGCTTTCATGTATATGAAGCCCTATCTTAACTCAAACTCTGTTCCCCCTTTGTCTAATCTTACCATTTTTGTGTTTACTGTCTTTTCTGTGTATTTGTCATGAAGTGATTGCCTCTTCTTTGGTGTATTTGAACTAATAAAGTACTTTTAATCGCAAGCTA
>XM_022681285.1
CGCGCATCCTCCGCGAATGCCTTTGCGATGACGCCGATATGAGGCAAACGCAGAGCGGCCATTACACAGCGAGTTTCCCAGGGAAGGTCGGGAGGGAGAGAGCGGGGGAGCCACTGAAATAGATCCGCCACACCGCGCCGTAGGTCCCGCCGAGCCGCCCTCCATCAGCACGCGTACAGACGGGAGAACGCGCGGAGTCGCCTGTTTTAGAGCCGCGGTCTCCCCGCTTTCGACGGGTTCAGCTAGATAAAGTGTCCGGGGTAAAGCAGCCCTCGGTCGGCTAAGCTAAGCCGAGCTAAGCGGCCGCCCGCACCGCTGAGCCTAAATCCAGCCGGCTGGtcgctaggttagctagcgaGCTAAACGACGCCAGCAGGAGCACACAGCCGGTTCTGAGGGGGGTTTCACCGGGTACCGGATTACACAGACCTCCGCTCAGCCCCAGAAACCATAGCTAGAGGCCCGTACTGCGCTCCAGGACGCGCCGAGGATGGATGATAAAGCCTTTACTAAAGAATTAGACCAGTGGGTCGAACAGCTGAACGAGTGTAAGCAGCTCACCGAGAACCAAGTGCGGACCCTCTGCGAGAAGGCTAAAGAGATCCTGACTAAGGAGTCCAATGTACAGGAGGTGCGCTGCCCCGTCACAGTATGTGGCGATGTGCACGGGCAGTTCCACGACCTCATGGAGCTGTTCAGAATTGGAGGAAAGTCGCCCGACACCAACTATCTGTTTATGGGCGACTACGTAGACAGAGGCTACTACTCGGTGGAAACGGTCACACTTCTTGTTGCGCTAAAGGTGAAGAAATTGGAATATTGCCGTCGTTTTCCAGAACGCATAACGATATTGCGCGGAAACCACGAGAGCAGACAGATTACACAGGTTTATGGATTCTATGACGAGTGCTTGAGGAAATATGGCAATGCAAATGTCTGGAAATATTTCACTGACCTCTTCGACTACCTACCCCTCACAGCTCTGGTTGATGGACAGATCTTCTGTCTGCATGGTGGGTTGTCTCCATCGATAGACACATTGGATCACATTCGTGCTTTAGATCGTCTCCAGGAGGTGCCACATGAGGGCCCAATGTGTGATCTGCTGTGGTCAGACCCTGATGACCGCGGAGGCTGGGGCATCTCTCCCAGGGGTGCTGGATACACCTTTGGCCAAGACATTTCTGAAACTTTTAACCATGCCAATGGTCTTACCCTGGTCTCCCGTGCCCATCAACTTGTTATGGAGGGATACAACTGGTGTCACGATAGAAATGTTGTCACCATATTCAGTGCGCCAAACTACTGCTATCGCTGTGGCAACCAGGCTGCCATAATGGAACTGGATGATACTCTTAAATATTCCTTCCTTCAGTTTGATCCTGCACCTCGGCGCGGAGAGCCTCACGTCACCCGCCGCACCCCCGATTACTTCTTATAAACACGCACTGGCCTGACGTAGGAACACGACCTCTAAAGTAAACACCACCACAATGCGGCAGATCCCGACATGTATACATTTTCATCCCAccgcgcgagtgtgtgtgtgtgtgtgtgtatatatacggGGATGTGTcatgacatgacatgaaagCACTAACATGGACCAAAATGTGCCATACAAGCATTTAATGCAGAATTACAAATTGCCCTGTGTCTCAGTACTGCTACACAGTGTCCCGTTTAGCCTATAGTGCAATTGCCTGCTGTATACTATGGATAGTAATGTTCTCTTTGTTCTTGAATTGTACATTACTctgagcaaaacaaaaaaagtgatcTTTAGCTTTTCTCCCCTTCGGTATCACTGGACAAAAACGATGTACTTTAAGTTGGCGATGCCCGGCATGTGACATAAGGTAACATTTTATACAAGTGCACAAGCTTACATCCTTTCCTGTCTTCACCAAAAAAGAAACACTATGCTATTCTATTGGGAATGAATGCTTAATCTGAGGGAGAAGCCTCTTCCTTTTTGGGAGTGTATGCTTTCATGTATATGAAGCCCTATCTTAACTCAAACTCTGTTCCCCCTTTGTCTAATCTTACCATTTTTGTGTTTACTGTCTTTTCTGTGTATTTGTCATGAAGTGATTGCCTCTTCTTTGGTGTATTTGAACTAATAAAGTACTTTTAATCGCAAGCTA

Function

symbol description
ppp2cb Predicted to enable protein serine phosphatase activity and protein threonine phosphatase activity. Orthologous to human PPP2CB (protein phosphatase 2 catalytic subunit beta).

NR:

description
PREDICTED: serine/threonine-protein phosphatase 2A catalytic subunit beta isoform isoform X1

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255251.3 False 2125 mRNA 0.50 7 23503307 23514711
XM_022681285.1 True 2147 mRNA 0.50 7 23503307 23514711

Neighbor

gene id symbol gene type direction distance location
LOC103034079 NA coding upstream 5689 23494154 ~ 23497618 (+)
LOC111188215 NA coding upstream 9007 23479537 ~ 23494300 (+)
purg NA coding upstream 41332 23459368 ~ 23461975 (+)
fut10 fut10 coding upstream 286049 23203476 ~ 23217258 (+)
LOC103038592 LOC106571427,LOC108427269,LOC108276947 coding upstream 316083 22995089 ~ 23187224 (+)
LOC103037096 LOC108410414,LOC108277158,LOC105901021,LOC106603263 coding downstream 27139 23541850 ~ 23690355 (+)
LOC111195073 NA coding downstream 189276 23703987 ~ 23707849 (+)
gramd2b gramd3 coding downstream 957495 24472206 ~ 24482883 (+)
trnam-cau_40 NA coding downstream 987163 24501874 ~ 24501945 (+)
phax phax coding downstream 990926 24505637 ~ 24509580 (+)
G178632 NA non-coding upstream 2966 23499843 ~ 23500341 (+)
G178611 NA non-coding upstream 28102 23447089 ~ 23475205 (+)
G178624 wrn,LOC107715857,LOC107573262 non-coding upstream 70596 23427385 ~ 23432711 (+)
G178623 wrn non-coding upstream 76810 23425155 ~ 23426497 (+)
G178617 NA non-coding upstream 84964 23411105 ~ 23418343 (+)
G178635 NA non-coding downstream 864 23515575 ~ 23515901 (+)
G178634 NA non-coding downstream 1600 23516311 ~ 23519214 (+)
G178781 NA non-coding downstream 673275 24187986 ~ 24191257 (+)
G178805 NA non-coding downstream 777264 24291975 ~ 24293344 (+)
LOC111195075 NA non-coding downstream 783401 24298112 ~ 24301847 (+)
G178485 NA other upstream 538318 22963447 ~ 22964989 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other upstream 793750 22689001 ~ 22709557 (+)
G178352 NA other upstream 957177 22544640 ~ 22546130 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other upstream 1001148 22493440 ~ 22502159 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other upstream 1011804 22486823 ~ 22491503 (+)
LOC103032894 LOC108424565 other downstream 933081 24447792 ~ 24454622 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other downstream 1729450 25244161 ~ 25257469 (+)
LOC103024073 LOC108424537 other downstream 3315926 26830637 ~ 26879083 (+)
rnasek rnasek,LOC107554319 other downstream 3399039 26913750 ~ 26916344 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 4009591 27524302 ~ 27525441 (+)

Expression


Co-expression Network